CSPI03G21480 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G21480
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Transposase
Location	Chr3: 17732862 .. 17733431 (-)
RNA-Seq Expression	CSPI03G21480
Synteny	CSPI03G21480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACCCAAGCAAGGAAAGTTTTTTACGTTGAAGATCCAAGTGATGCTAGATGGTCAATTGTGTTTACTCCACCACAGAGAGATTGTGAAGATCAATCAAATGACGATGAACTTGGAGATATCATGTTATTACATAGTCAAGGAGTACCTAGTGATATGCCAAATATCGATGATAATATTGATTTAGATGAGAATATCTCAACATATGTACGATTAGATTGTGAAGGCACATGGGTTCCTAAATAACACAATGTGGTTGACTTTCTACTATTTTATATATGTACTTATATGCTATGTTTTATTTTGAATATGCCTAAACCCTAAACCGTAATATAATCTACACTAACAAAAAAAATTTAATGTTGCTTTGACAGGATATTCTACTTACACATGAAGCCAAATATAGTAACTGATGATAAAGACAAGGACGTTAGTAGATTAGTGGTTGGAGGAGTTGATGACCAAATTGAAGAGAAGCCTAAAAGACAAAGGAAGCGGGGACCTACTATTATGTTTGATGAGACTCGAGTTAGAAGTGAAGGTGAGAGGAAAATAGTGGGAATATAA

mRNA sequence

ATGGCAACCCAAGCAAGGAAAGTTTTTTACGTTGAAGATCCAAGTGATGCTAGATGGTCAATTGTGTTTACTCCACCACAGAGAGATTGTGAAGATCAATCAAATGACGATGAACTTGGAGATATCATGTTATTACATAGTCAAGGAGTACCTAGTGATATGCCAAATATCGATGATAATATTGATTTAGATGAGAATATCTCAACATATGTACGATTAGATTGTGAAGGCACATGGCCAAATATAGTAACTGATGATAAAGACAAGGACGTTAGTAGATTAGTGGTTGGAGGAGTTGATGACCAAATTGAAGAGAAGCCTAAAAGACAAAGGAAGCGGGGACCTACTATTATGTTTGATGAGACTCGAGTTAGAAGTGAAGGTGAGAGGAAAATAGTGGGAATATAA

Coding sequence (CDS)

ATGGCAACCCAAGCAAGGAAAGTTTTTTACGTTGAAGATCCAAGTGATGCTAGATGGTCAATTGTGTTTACTCCACCACAGAGAGATTGTGAAGATCAATCAAATGACGATGAACTTGGAGATATCATGTTATTACATAGTCAAGGAGTACCTAGTGATATGCCAAATATCGATGATAATATTGATTTAGATGAGAATATCTCAACATATGTACGATTAGATTGTGAAGGCACATGGCCAAATATAGTAACTGATGATAAAGACAAGGACGTTAGTAGATTAGTGGTTGGAGGAGTTGATGACCAAATTGAAGAGAAGCCTAAAAGACAAAGGAAGCGGGGACCTACTATTATGTTTGATGAGACTCGAGTTAGAAGTGAAGGTGAGAGGAAAATAGTGGGAATATAA

Protein sequence

MATQARKVFYVEDPSDARWSIVFTPPQRDCEDQSNDDELGDIMLLHSQGVPSDMPNIDDNIDLDENISTYVRLDCEGTWPNIVTDDKDKDVSRLVVGGVDDQIEEKPKRQRKRGPTIMFDETRVRSEGERKIVGI*

Homology

[Close]

BLAST of CSPI03G21480 vs. ExPASy TrEMBL
Match: A0A5A7VSU6 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001040 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 8.1e-41
Identity = 95/136 (69.85%), Postives = 106/136 (77.94%), Query Frame = 0


Query: 1   MATQARKVFYVEDPSDARWSIVFTPPQRDCEDQSNDDELGDIMLLHSQGVPSDMPNIDDN 60
           MATQAR+VFYVEDPSDARWSIV TPPQRDCEDQSNDDELGDIM LH QGVPSDMPN+D  
Sbjct: 263 MATQARQVFYVEDPSDARWSIVLTPPQRDCEDQSNDDELGDIM-LHCQGVPSDMPNVDRG 322

Query: 61  IDLDENISTYVRLDCEGTWPNIVTDDKD---KDVSRLVVGGVDDQIEEKPKRQRKRGPTI 120
            DLDEN+STY  L   G   +    DK+    ++  LVVG VD+ + EKPK+QRKR PTI
Sbjct: 323 NDLDENMSTYDNLFTHGANDSKRHQDKEVGGAEIDGLVVGVVDEHV-EKPKQQRKRRPTI 382

Query: 121 MFDETRVRSEGERKIV 134
           MFD TRVRSE ERK+V
Sbjct: 383 MFDATRVRSECERKLV 396

[Close]

BLAST of CSPI03G21480 vs. ExPASy TrEMBL
Match: A0A5D3DCP7 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00210 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 8.1e-41
Identity = 95/136 (69.85%), Postives = 106/136 (77.94%), Query Frame = 0


Query: 1   MATQARKVFYVEDPSDARWSIVFTPPQRDCEDQSNDDELGDIMLLHSQGVPSDMPNIDDN 60
           MATQAR+VFYVEDPSDARWSIV TPPQRDCEDQSNDDELGDIM LH QGVPSDMPN+D  
Sbjct: 400 MATQARQVFYVEDPSDARWSIVLTPPQRDCEDQSNDDELGDIM-LHCQGVPSDMPNVDRG 459

Query: 61  IDLDENISTYVRLDCEGTWPNIVTDDKD---KDVSRLVVGGVDDQIEEKPKRQRKRGPTI 120
            DLDEN+STY  L   G   +    DK+    ++  LVVG VD+ + EKPK+QRKR PTI
Sbjct: 460 NDLDENMSTYDNLFTHGANDSKRHQDKEVGGAEIDGLVVGVVDEHV-EKPKQQRKRRPTI 519

Query: 121 MFDETRVRSEGERKIV 134
           MFD TRVRSE ERK+V
Sbjct: 520 MFDATRVRSECERKLV 533

[Close]

BLAST of CSPI03G21480 vs. ExPASy TrEMBL
Match: A0A5A7T960 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G003750 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.4e-40
Identity = 96/138 (69.57%), Postives = 108/138 (78.26%), Query Frame = 0


Query: 1   MATQARKVFYVEDPSDARWSIVFTPPQRDCEDQSNDDELGDIMLLHSQGVPSDMPNIDDN 60
           MATQAR+VFYVEDPSDARWSIV TPPQRDCEDQSNDDELGDIM LH QGVPSDMPNID  
Sbjct: 115 MATQARQVFYVEDPSDARWSIVLTPPQRDCEDQSNDDELGDIM-LHCQGVPSDMPNIDGG 174

Query: 61  IDLDENISTYVRLDCEGTWPNIVTDDKDKDV-----SRLVVGGVDDQIEEKPKRQRKRGP 120
            DL EN+   + ++     P IV DD+DK+V       LVVG VD+ + EKPK+QRKRGP
Sbjct: 175 NDLGENMIFSLHME-----PMIVRDDQDKEVGGAEIDGLVVGVVDEHV-EKPKQQRKRGP 234

Query: 121 TIMFDETRVRSEGERKIV 134
            I+FD TRVRSEGERK+V
Sbjct: 235 MIIFDVTRVRSEGERKLV 245

[Close]

BLAST of CSPI03G21480 vs. ExPASy TrEMBL
Match: A0A5D3DAC9 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00270 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.4e-40
Identity = 96/138 (69.57%), Postives = 108/138 (78.26%), Query Frame = 0


Query: 1   MATQARKVFYVEDPSDARWSIVFTPPQRDCEDQSNDDELGDIMLLHSQGVPSDMPNIDDN 60
           MATQAR+VFYVEDPSDARWSIV TPPQRDCEDQSNDDELGDIM LH QGVPSDMPNID  
Sbjct: 115 MATQARQVFYVEDPSDARWSIVLTPPQRDCEDQSNDDELGDIM-LHCQGVPSDMPNIDGG 174

Query: 61  IDLDENISTYVRLDCEGTWPNIVTDDKDKDV-----SRLVVGGVDDQIEEKPKRQRKRGP 120
            DL EN+   + ++     P IV DD+DK+V       LVVG VD+ + EKPK+QRKRGP
Sbjct: 175 NDLGENMIFSLHME-----PMIVRDDQDKEVGGAEIDGLVVGVVDEHV-EKPKQQRKRGP 234

Query: 121 TIMFDETRVRSEGERKIV 134
            I+FD TRVRSEGERK+V
Sbjct: 235 MIIFDVTRVRSEGERKLV 245

[Close]

BLAST of CSPI03G21480 vs. ExPASy TrEMBL
Match: A0A5A7UBQ2 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold773G00050 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 7.5e-39
Identity = 94/134 (70.15%), Postives = 104/134 (77.61%), Query Frame = 0


Query: 1   MATQARKVFYVEDPSDARWSIVFTPPQRDCEDQSNDDELGDIMLLHSQGVPSDMPNIDDN 60
           MATQ R+ FYVEDPSDARWSIV TPPQRDCEDQSND+ELGDIM LH QGVPSD PNID  
Sbjct: 1   MATQVRQDFYVEDPSDARWSIVLTPPQRDCEDQSNDNELGDIM-LHCQGVPSDKPNIDGG 60

Query: 61  IDLDENISTY-VRLDCEGTWPNIVTDDKDKDVSRLVVGGVDDQIEEKPKRQRKRGPTIMF 120
            DLDENISTY + L+ E T   IV D +DK+     VGG +    EKPK+QRKRGP IMF
Sbjct: 61  NDLDENISTYDILLNMEST---IVRDGEDKE-----VGGAEIHGLEKPKQQRKRGPKIMF 120

Query: 121 DETRVRSEGERKIV 134
           D TRVRSEGE+K+V
Sbjct: 121 DVTRVRSEGEKKLV 125

[Close]

BLAST of CSPI03G21480 vs. NCBI nr
Match: TYK21059.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 176.4 bits (446), Expect = 1.7e-40
Identity = 95/136 (69.85%), Postives = 106/136 (77.94%), Query Frame = 0


Query: 1   MATQARKVFYVEDPSDARWSIVFTPPQRDCEDQSNDDELGDIMLLHSQGVPSDMPNIDDN 60
           MATQAR+VFYVEDPSDARWSIV TPPQRDCEDQSNDDELGDIM LH QGVPSDMPN+D  
Sbjct: 400 MATQARQVFYVEDPSDARWSIVLTPPQRDCEDQSNDDELGDIM-LHCQGVPSDMPNVDRG 459

Query: 61  IDLDENISTYVRLDCEGTWPNIVTDDKD---KDVSRLVVGGVDDQIEEKPKRQRKRGPTI 120
            DLDEN+STY  L   G   +    DK+    ++  LVVG VD+ + EKPK+QRKR PTI
Sbjct: 460 NDLDENMSTYDNLFTHGANDSKRHQDKEVGGAEIDGLVVGVVDEHV-EKPKQQRKRRPTI 519

Query: 121 MFDETRVRSEGERKIV 134
           MFD TRVRSE ERK+V
Sbjct: 520 MFDATRVRSECERKLV 533

[Close]

BLAST of CSPI03G21480 vs. NCBI nr
Match: KAA0068139.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 176.4 bits (446), Expect = 1.7e-40
Identity = 95/136 (69.85%), Postives = 106/136 (77.94%), Query Frame = 0


Query: 1   MATQARKVFYVEDPSDARWSIVFTPPQRDCEDQSNDDELGDIMLLHSQGVPSDMPNIDDN 60
           MATQAR+VFYVEDPSDARWSIV TPPQRDCEDQSNDDELGDIM LH QGVPSDMPN+D  
Sbjct: 263 MATQARQVFYVEDPSDARWSIVLTPPQRDCEDQSNDDELGDIM-LHCQGVPSDMPNVDRG 322

Query: 61  IDLDENISTYVRLDCEGTWPNIVTDDKD---KDVSRLVVGGVDDQIEEKPKRQRKRGPTI 120
            DLDEN+STY  L   G   +    DK+    ++  LVVG VD+ + EKPK+QRKR PTI
Sbjct: 323 NDLDENMSTYDNLFTHGANDSKRHQDKEVGGAEIDGLVVGVVDEHV-EKPKQQRKRRPTI 382

Query: 121 MFDETRVRSEGERKIV 134
           MFD TRVRSE ERK+V
Sbjct: 383 MFDATRVRSECERKLV 396

[Close]

BLAST of CSPI03G21480 vs. NCBI nr
Match: KAA0038147.1 (hypothetical protein E6C27_scaffold36G003750 [Cucumis melo var. makuwa])

HSP 1 Score: 175.6 bits (444), Expect = 2.8e-40
Identity = 96/138 (69.57%), Postives = 108/138 (78.26%), Query Frame = 0


Query: 1   MATQARKVFYVEDPSDARWSIVFTPPQRDCEDQSNDDELGDIMLLHSQGVPSDMPNIDDN 60
           MATQAR+VFYVEDPSDARWSIV TPPQRDCEDQSNDDELGDIM LH QGVPSDMPNID  
Sbjct: 115 MATQARQVFYVEDPSDARWSIVLTPPQRDCEDQSNDDELGDIM-LHCQGVPSDMPNIDGG 174

Query: 61  IDLDENISTYVRLDCEGTWPNIVTDDKDKDV-----SRLVVGGVDDQIEEKPKRQRKRGP 120
            DL EN+   + ++     P IV DD+DK+V       LVVG VD+ + EKPK+QRKRGP
Sbjct: 175 NDLGENMIFSLHME-----PMIVRDDQDKEVGGAEIDGLVVGVVDEHV-EKPKQQRKRGP 234

Query: 121 TIMFDETRVRSEGERKIV 134
            I+FD TRVRSEGERK+V
Sbjct: 235 MIIFDVTRVRSEGERKLV 245

[Close]

BLAST of CSPI03G21480 vs. NCBI nr
Match: TYK20459.1 (putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa])

HSP 1 Score: 175.6 bits (444), Expect = 2.8e-40
Identity = 96/138 (69.57%), Postives = 108/138 (78.26%), Query Frame = 0


Query: 1   MATQARKVFYVEDPSDARWSIVFTPPQRDCEDQSNDDELGDIMLLHSQGVPSDMPNIDDN 60
           MATQAR+VFYVEDPSDARWSIV TPPQRDCEDQSNDDELGDIM LH QGVPSDMPNID  
Sbjct: 115 MATQARQVFYVEDPSDARWSIVLTPPQRDCEDQSNDDELGDIM-LHCQGVPSDMPNIDGG 174

Query: 61  IDLDENISTYVRLDCEGTWPNIVTDDKDKDV-----SRLVVGGVDDQIEEKPKRQRKRGP 120
            DL EN+   + ++     P IV DD+DK+V       LVVG VD+ + EKPK+QRKRGP
Sbjct: 175 NDLGENMIFSLHME-----PMIVRDDQDKEVGGAEIDGLVVGVVDEHV-EKPKQQRKRGP 234

Query: 121 TIMFDETRVRSEGERKIV 134
            I+FD TRVRSEGERK+V
Sbjct: 235 MIIFDVTRVRSEGERKLV 245

[Close]

BLAST of CSPI03G21480 vs. NCBI nr
Match: KAA0052814.1 (putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa])

HSP 1 Score: 169.9 bits (429), Expect = 1.6e-38
Identity = 94/134 (70.15%), Postives = 104/134 (77.61%), Query Frame = 0


Query: 1   MATQARKVFYVEDPSDARWSIVFTPPQRDCEDQSNDDELGDIMLLHSQGVPSDMPNIDDN 60
           MATQ R+ FYVEDPSDARWSIV TPPQRDCEDQSND+ELGDIM LH QGVPSD PNID  
Sbjct: 1   MATQVRQDFYVEDPSDARWSIVLTPPQRDCEDQSNDNELGDIM-LHCQGVPSDKPNIDGG 60

Query: 61  IDLDENISTY-VRLDCEGTWPNIVTDDKDKDVSRLVVGGVDDQIEEKPKRQRKRGPTIMF 120
            DLDENISTY + L+ E T   IV D +DK+     VGG +    EKPK+QRKRGP IMF
Sbjct: 61  NDLDENISTYDILLNMEST---IVRDGEDKE-----VGGAEIHGLEKPKQQRKRGPKIMF 120

Query: 121 DETRVRSEGERKIV 134
           D TRVRSEGE+K+V
Sbjct: 121 DVTRVRSEGEKKLV 125

The following BLAST results are available for this feature:

BLAST of CSPI03G21480 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G21480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VSU6	8.1e-41	69.85	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001040 P...	[more]
A0A5D3DCP7	8.1e-41	69.85	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00210 PE...	[more]
A0A5A7T960	1.4e-40	69.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DAC9	1.4e-40	69.57	Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7UBQ2	7.5e-39	70.15	Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of CSPI03G21480 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK21059.1	1.7e-40	69.85	transposase [Cucumis melo var. makuwa]	[more]
KAA0068139.1	1.7e-40	69.85	transposase [Cucumis melo var. makuwa]	[more]
KAA0038147.1	2.8e-40	69.57	hypothetical protein E6C27_scaffold36G003750 [Cucumis melo var. makuwa]	[more]
TYK20459.1	2.8e-40	69.57	putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa]	[more]
KAA0052814.1	1.6e-38	70.15	putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa]	[more]

BLAST of CSPI03G21480 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G21480.1	CSPI03G21480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003676	nucleic acid binding