CSPI03G21000 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G21000
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTy3-gypsy retrotransposon protein
LocationChr3: 17103937 .. 17104328 (+)
RNA-Seq ExpressionCSPI03G21000
SyntenyCSPI03G21000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAGGAAAAGGGACTATGTTTTCGATGTGACGAAAAATTCAGTCTGGGGCACCGTTGCAAAAGACGAGAATTAAATATCATTGTTATTCAAGAAGGGGAGGACTTAAGTGGGGAAATTGATAAAGTAGCAAAGGAGACTGAAGATGAGAATGAGCAAATCAATACTGAGATTGCGAATTTGTCTTTACATTCGTTGGTAGGTTTTAGTTCTCCTAAAACCATAAAAATAAAAGGCGAAATCAGGAATCGCGAAGTTGTCGTGTCGATGGGGGAGCTACACATAACTTTATTTCGGAGGAGGTGGTCAAGGAATTAAAAATTCCAATAGAAACTTTAGATGCTTATGGCGTTGTTTTGGGAACCGGGGGTGTAGTTCGAGCAACATGA

mRNA sequence

ATGAAGAAGGAAAAGGGACTATGTTTTCGATGTGACGAAAAATTCAGTCTGGGGCACCGTTGCAAAAGACGAGAATTAAATATCATTGTTATTCAAGAAGGGGAGGACTTAAGTGGGGAAATTGATAAAGTAGCAAAGGAGACTGAAGATGAGAATGAGCAAATCAATACTGAGATTGCGAATTTGTCTTTACATTCGTTGGAATCGCGAAGTTGTCGTGTCGATGGGGGAGCTACACATAACTTTATTTCGGAGGAGGTGGTCAAGGAATTAAAAATTCCAATAGAAACTTTAGATGCTTATGGCGTTGTTTTGGGAACCGGGGGTGTAGTTCGAGCAACATGA

Coding sequence (CDS)

ATGAAGAAGGAAAAGGGACTATGTTTTCGATGTGACGAAAAATTCAGTCTGGGGCACCGTTGCAAAAGACGAGAATTAAATATCATTGTTATTCAAGAAGGGGAGGACTTAAGTGGGGAAATTGATAAAGTAGCAAAGGAGACTGAAGATGAGAATGAGCAAATCAATACTGAGATTGCGAATTTGTCTTTACATTCGTTGGAATCGCGAAGTTGTCGTGTCGATGGGGGAGCTACACATAACTTTATTTCGGAGGAGGTGGTCAAGGAATTAAAAATTCCAATAGAAACTTTAGATGCTTATGGCGTTGTTTTGGGAACCGGGGGTGTAGTTCGAGCAACATGA

Protein sequence

MKKEKGLCFRCDEKFSLGHRCKRRELNIIVIQEGEDLSGEIDKVAKETEDENEQINTEIANLSLHSLESRSCRVDGGATHNFISEEVVKELKIPIETLDAYGVVLGTGGVVRAT*
Homology
BLAST of CSPI03G21000 vs. ExPASy TrEMBL
Match: A0A5D3CTU6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00600 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.3e-31
Identity = 81/129 (62.79%), Postives = 92/129 (71.32%), Query Frame = 0

Query: 3   KEKGLCFRCDEKFSLGHRCKRRELNIIVIQEGEDLSGEIDKVAKETEDE-NEQINTEIAN 62
           KEKGLCFRCDEKFS  HRCKR ELNII +QE EDLS E D+V +E E + NE++N EIAN
Sbjct: 9   KEKGLCFRCDEKFSSEHRCKRCELNIIAVQEREDLSEETDQVGEEIETKGNEEVNIEIAN 68

Query: 63  LSLHSLESRS-----------------CRVDGGATHNFISEEVVKELKIPIETLDAYGVV 114
           LSL+SL   S                   +DGGATHNFI +EVVKELKI IETLDAYG+V
Sbjct: 69  LSLNSLVGLSSPKTIKIKGEIRGREIVVLIDGGATHNFILKEVVKELKISIETLDAYGIV 128

BLAST of CSPI03G21000 vs. ExPASy TrEMBL
Match: A0A6J1DN22 (Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111021922 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.2e-15
Identity = 47/128 (36.72%), Postives = 74/128 (57.81%), Query Frame = 0

Query: 2   KKEKGLCFRCDEKFSLGHRCKRRELNIIVIQEGEDLSGEIDKVAKETEDENEQINTEIAN 61
           +K+KGLCFR +EK+S+GHRCK +EL + V+ + E +  + +++   TE     I  E+A 
Sbjct: 294 RKDKGLCFRSEEKYSIGHRCKNQELKVFVVHDDEGMELDQEELIMSTEGRETTIVEEVAE 353

Query: 62  LSLHSLESRS-----------------CRVDGGATHNFISEEVVKELKIPIETLDAYGVV 113
           L+L+++   S                   +D GATHNFIS+++V    +P+     YGV+
Sbjct: 354 LALNTVVGFSTPGTMKLRGLIEDKEVVILIDCGATHNFISQKLVDAFNLPLHETSNYGVI 413

BLAST of CSPI03G21000 vs. ExPASy TrEMBL
Match: A0A067D9Z8 (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g045527mg PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 8.4e-15
Identity = 51/131 (38.93%), Postives = 78/131 (59.54%), Query Frame = 0

Query: 3   KEKGLCFRCDEKFSLGHRCKRRELNIIVIQEGEDLSGEIDKVAKETEDEN---EQINTEI 62
           +E GLC++CDEKFS GHRC+++EL ++++QE E  +  ++ V +E E E+   E    ++
Sbjct: 62  QECGLCYKCDEKFSPGHRCRKQELQVVLLQEYEAEAQAVEDVGQERELESKPTEGAKNQV 121

Query: 63  ANLSLHSL-------------ESRSCRV----DGGATHNFISEEVVKELKIPIETLDAYG 114
             +SL+S+             E  + +V    D GA+HNFIS EVV  LK+PI   + YG
Sbjct: 122 VEVSLNSVVGLTSPKTLKLASEINNKKVVVLTDSGASHNFISNEVVLVLKLPITNTEPYG 181

BLAST of CSPI03G21000 vs. ExPASy TrEMBL
Match: A0A5C7IJS7 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_004373 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.2e-14
Identity = 51/133 (38.35%), Postives = 78/133 (58.65%), Query Frame = 0

Query: 1   MKKEKGLCFRCDEKFSLGHRCKRRELNIIVI--QEGEDLSGEIDKVAKETEDENEQIN-- 60
           +K+  GLC+RCDEK+S GH+CK++ELN+++   +E E+   E   +  E   E  +I+  
Sbjct: 302 LKRTHGLCYRCDEKWSPGHKCKKKELNVLITYDEEDEEEPEEAPVMVDEPVLEAAEISEF 361

Query: 61  TEIANLSLHSLESRSC-----------------RVDGGATHNFISEEVVKELKIPIETLD 113
           TE   +SL+S+   +                   +D GATHNFIS ++V++LK+PI   +
Sbjct: 362 TEAVEVSLNSVVGLTTPKTMKMKGIVGQQQVVFLIDPGATHNFISADLVQKLKLPITRTE 421

BLAST of CSPI03G21000 vs. ExPASy TrEMBL
Match: A0A5D3CA10 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold87G00060 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 4.2e-14
Identity = 49/134 (36.57%), Postives = 79/134 (58.96%), Query Frame = 0

Query: 2   KKEKGLCFRCDEKFSLGHRCK---RRELNIIVIQEGEDLSGEIDKVAKETEDENEQIN-- 61
           +KEKGLCFRC+EK+S  HRC+   +REL + V+ EG+D    +++  +E +    ++N  
Sbjct: 351 RKEKGLCFRCNEKYSADHRCRLKEQRELRMFVVTEGKDEYEIVEEEKEEKDFGRLEVNED 410

Query: 62  -TEIANLSLHSL-----------------ESRSCRVDGGATHNFISEEVVKELKIPIETL 113
            T +  LS++S+                 E     +D GATHNF+SE++VK+L +P++  
Sbjct: 411 LTTVVELSINSVVGLNDPGTMKVRGKLLGEEVIVLIDCGATHNFVSEKLVKKLILPVKET 470

BLAST of CSPI03G21000 vs. NCBI nr
Match: KAE8650876.1 (hypothetical protein Csa_002497, partial [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 1.8e-35
Identity = 87/132 (65.91%), Postives = 103/132 (78.03%), Query Frame = 0

Query: 1   MKKEKGLCFRCDEKFSLGHRCKRRELNIIVIQEGEDLSGEIDKVAKETE-DENEQINTEI 60
           +KKEKG CFRCD+KFS  HRCKRRELNIIV+QEGEDLS E D+V +E E + N++INTEI
Sbjct: 3   IKKEKGWCFRCDKKFSPEHRCKRRELNIIVVQEGEDLSEETDQVGEEIETNGNDEINTEI 62

Query: 61  ANLSLHSL----ESRSCR-------------VDGGATHNFISEEVVKELKIPIETLDAYG 115
           ANLSL+SL     S++ +             +DGGATHNFI+EEVVKELKI +ET+DAYG
Sbjct: 63  ANLSLNSLVGLNSSKTIKIKGEIRGREVVVLIDGGATHNFIAEEVVKELKISVETMDAYG 122

BLAST of CSPI03G21000 vs. NCBI nr
Match: XP_031737572.1 (uncharacterized protein LOC116402461 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 1.8e-35
Identity = 87/132 (65.91%), Postives = 103/132 (78.03%), Query Frame = 0

Query: 1   MKKEKGLCFRCDEKFSLGHRCKRRELNIIVIQEGEDLSGEIDKVAKETE-DENEQINTEI 60
           +KKEKG CFRCD+KFS  HRCKRRELNIIV+QEGEDLS E D+V +E E + N++INTEI
Sbjct: 27  IKKEKGWCFRCDKKFSPEHRCKRRELNIIVVQEGEDLSEETDQVGEEIETNGNDEINTEI 86

Query: 61  ANLSLHSL----ESRSCR-------------VDGGATHNFISEEVVKELKIPIETLDAYG 115
           ANLSL+SL     S++ +             +DGGATHNFI+EEVVKELKI +ET+DAYG
Sbjct: 87  ANLSLNSLVGLNSSKTIKIKGEIRGREVVVLIDGGATHNFIAEEVVKELKISVETMDAYG 146

BLAST of CSPI03G21000 vs. NCBI nr
Match: KAA0039528.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK15281.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 145.6 bits (366), Expect = 2.7e-31
Identity = 81/129 (62.79%), Postives = 92/129 (71.32%), Query Frame = 0

Query: 3   KEKGLCFRCDEKFSLGHRCKRRELNIIVIQEGEDLSGEIDKVAKETEDE-NEQINTEIAN 62
           KEKGLCFRCDEKFS  HRCKR ELNII +QE EDLS E D+V +E E + NE++N EIAN
Sbjct: 9   KEKGLCFRCDEKFSSEHRCKRCELNIIAVQEREDLSEETDQVGEEIETKGNEEVNIEIAN 68

Query: 63  LSLHSLESRS-----------------CRVDGGATHNFISEEVVKELKIPIETLDAYGVV 114
           LSL+SL   S                   +DGGATHNFI +EVVKELKI IETLDAYG+V
Sbjct: 69  LSLNSLVGLSSPKTIKIKGEIRGREIVVLIDGGATHNFILKEVVKELKISIETLDAYGIV 128

BLAST of CSPI03G21000 vs. NCBI nr
Match: KAE8647113.1 (hypothetical protein Csa_021721 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 5.8e-18
Identity = 49/68 (72.06%), Postives = 61/68 (89.71%), Query Frame = 0

Query: 1   MKKEKGLCFRCDEKFSLGHRCKRRELNIIVIQEGEDLSGEIDKVAKETE-DENEQINTEI 60
           +KKEKGLCFRCDEKFSLGHRCKRRELNIIV+QEGEDLS + D+V +E E + N+++NT+I
Sbjct: 68  IKKEKGLCFRCDEKFSLGHRCKRRELNIIVVQEGEDLSDKTDQVGEEIETNGNKEVNTKI 127

Query: 61  ANLSLHSL 68
            NLS++SL
Sbjct: 128 VNLSINSL 135

BLAST of CSPI03G21000 vs. NCBI nr
Match: KAF8398742.1 (hypothetical protein HHK36_014600 [Tetracentron sinense])

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-16
Identity = 53/129 (41.09%), Postives = 86/129 (66.67%), Query Frame = 0

Query: 2   KKEKGLCFRCDEKFSLGHRCKRRELNIIV---IQEGEDLSGEIDKVAK-ETEDENEQINT 61
           K++KGLC+RCD+K++ GHRCK++ELN+++   + EGE  +GE++++ + + E E  +I T
Sbjct: 136 KRDKGLCYRCDDKWAPGHRCKKKELNVLLTHDVDEGE--TGEVEELDEVDPELETAEI-T 195

Query: 62  EIANLSLHSL--------------ESRSCRVDGGATHNFISEEVVKELKIPIETLDAYGV 113
           ++  +SL+S+              +     +D GATHNFIS E+VK L++PI  ++AYGV
Sbjct: 196 QVVEVSLNSVVGLKTMKLKGVIGEQEVVVLIDPGATHNFISLELVKRLQLPIAKIEAYGV 255

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CTU61.3e-3162.79Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A6J1DN222.2e-1536.72Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111021922 PE=4 SV=1[more]
A0A067D9Z88.4e-1538.93Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g045527m... [more]
A0A5C7IJS73.2e-1438.35Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_004373 PE=4 SV=1[more]
A0A5D3CA104.2e-1436.57Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
Match NameE-valueIdentityDescription
KAE8650876.11.8e-3565.91hypothetical protein Csa_002497, partial [Cucumis sativus][more]
XP_031737572.11.8e-3565.91uncharacterized protein LOC116402461 [Cucumis sativus][more]
KAA0039528.12.7e-3162.79ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK15281.1 ty3-gyp... [more]
KAE8647113.15.8e-1872.06hypothetical protein Csa_021721 [Cucumis sativus][more]
KAF8398742.11.4e-1641.09hypothetical protein HHK36_014600 [Tetracentron sinense][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 45..65
NoneNo IPR availablePFAMPF08284RVP_2coord: 44..100
e-value: 2.9E-5
score: 23.9
NoneNo IPR availablePANTHERPTHR34482:SF19TERMINAL URIDYLYLTRANSFERASE 7-LIKEcoord: 2..110
NoneNo IPR availablePANTHERPTHR34482DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKEcoord: 2..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G21000.1CSPI03G21000.1mRNA