CSPI03G20300 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G20300
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr3: 16102064 .. 16102279 (+)
RNA-Seq Expression	CSPI03G20300
Synteny	CSPI03G20300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACAGAACAGGGGGAGCAGATAGAGAACAGTCCTCAAAAGCGGGGAAAGGGAAGTGAAAGAGGGGGATTGAACCGGGGTGGACGAGGTCTTGTGATCACGATAACCAAGAGAATGAAGCTCGAGGCGACGCCCCTGAAAGCTTTTTTTCTGCAAAACCCAAGAGAGAAAATGAAAGGGGATATGCAGTTGCAGGGAGAGCGTGAAGGATGG

mRNA sequence

ATGGAAACAGAACAGGGGGAGCAGATAGAGAACAGTCCTCAAAAGCGGGGAAAGGGAAGTGAAAGAGGGGGATTGAACCGGGGTGGACGAGGTCTTGTGATCACGATAACCAAGAGAATGAAGCTCGAGGCGACGCCCCTGAAAGCTTTTTTTCTGCAAAACCCAAGAGAGAAAATGAAAGGGGATATGCAGTTGCAGGGAGAGCGTGAAGGATGG

Coding sequence (CDS)

ATGGAAACAGAACAGGGGGAGCAGATAGAGAACAGTCCTCAAAAGCGGGGAAAGGGAAGTGAAAGAGGGGGATTGAACCGGGGTGGACGAGGTCTTGTGATCACGATAACCAAGAGAATGAAGCTCGAGGCGACGCCCCTGAAAGCTTTTTTTCTGCAAAACCCAAGAGAGAAAATGAAAGGGGATATGCAGTTGCAGGGAGAGCGTGAAGGATGG

Protein sequence

METEQGEQIENSPQKRGKGSERGGLNRGGRGLVITITKRMKLEATPLKAFFLQNPREKMKGDMQLQGEREGW

Homology

[Close]

BLAST of CSPI03G20300 vs. ExPASy TrEMBL
Match: A0A0A0LCC9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G258130 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.0e-30
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1  METEQGEQIENSPQKRGKGSERGGLNRGGRGLVITITKRMKLEATPLKAFFLQNPREKMK 60
          METEQ EQIENSPQKRGKGSERGGLNRGGRGLVITITKRMKLEATPLKAFFLQNPREKMK
Sbjct: 1  METEQREQIENSPQKRGKGSERGGLNRGGRGLVITITKRMKLEATPLKAFFLQNPREKMK 60

Query: 61 GDMQLQGEREGW 73
          GDMQLQGEREGW
Sbjct: 61 GDMQLQGEREGW 72

[Close]

BLAST of CSPI03G20300 vs. NCBI nr
Match: KGN57711.1 (hypothetical protein Csa_011116 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 4.1e-30
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1  METEQGEQIENSPQKRGKGSERGGLNRGGRGLVITITKRMKLEATPLKAFFLQNPREKMK 60
          METEQ EQIENSPQKRGKGSERGGLNRGGRGLVITITKRMKLEATPLKAFFLQNPREKMK
Sbjct: 1  METEQREQIENSPQKRGKGSERGGLNRGGRGLVITITKRMKLEATPLKAFFLQNPREKMK 60

Query: 61 GDMQLQGEREGW 73
          GDMQLQGEREGW
Sbjct: 61 GDMQLQGEREGW 72

The following BLAST results are available for this feature:

BLAST of CSPI03G20300 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G20300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCC9	2.0e-30	98.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G258130 PE=4 SV=1	[more]

BLAST of CSPI03G20300 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57711.1	4.1e-30	98.61	hypothetical protein Csa_011116 [Cucumis sativus]	[more]

BLAST of CSPI03G20300 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G20300.1	CSPI03G20300.1	mRNA