Bhi05G000097 (gene) Wax gourd (B227) v1

Overview


Name	Bhi05G000097
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	protein LOW PSII ACCUMULATION 1, chloroplastic
Location	chr5: 2895001 .. 2900148 (-)
RNA-Seq Expression	Bhi05G000097
Synteny	Bhi05G000097

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGACTCTTTTCTTCACCCTTCCTCATCTTAGCTCTATGGTGGCGGCAAATTCTGGGTATCGTGGCGGCATCGAGACCATCCCTCGAAATTTGCTTCCATTGACAAACTGTCAAATTATCTCACCACATGTCAATTCTCAGTTTCTCTCGAGTCGTCAATCATGGCGGTTTCCCTTTCCACGCCCAACATTTCCTCCTGCAACAACATTACTCGCCCTCCTCATTTCTCTCGCACTTCCGATTTCAAATTCCGCCGCCGTATCTGCTGCCACGTCCATCGGAAGACGCTCTCCTTTAATTCTAGCCCTACTCTACCAGATTCGCTTCCTTCTCTTCACTACGCCAGACGGAATTTAGCTAACTTCACTTGCTCGGCTGCTGATAAACCGGAAATCAGGTTCTTCTCTCTTTCTCCTCTTTCTCTGTTGTGGTAGTGTATACAATGGAATAACAATGCCTGATGATTTTAATCCTATTATGAATTTTACATCTAACCACTTGATATTTGGTTGATTTTCGGTAGTCTCATGTTAATATGAATTAGGAGGCTCGTGCCTGGCTTCTCATATGAATTTTGCATCTGTGTATTTCCAATCGAGTATTTAAGTTGGTGACTTCTTCGTGTTTTATGCCTTGAGCTACAACGCTGCGTTTCTCTTTTACATATATGTTATCTGATCACAACTTGATTTGTGTAGCTTTTGTATCCTTTTGGTTTTTTTGGTTTTTGGTTTTTGAAAATTATACCTATTTCCTCCCAATTTCTCTCAATTTCTCTCAATTTCTTACTCTTATAAGTAAAAGAGTTTAATTTAAATTGTAAAACTAAAACTTTTTAGTTTTCAAAACTCGGTTGGGTTTTTGAAAACATTGGTGGAAAGTAGATTAGAGGTAGAAGGGTGTTTCTAGGCTTAATTTTTAAAAACTAAAAACAATTACAAAATAGTTACTAAATGAGCCTAAACTATTTGATTTGTTCAACGTATAGCGGTTCCAAATTCAGCCAGAAGGAACTGTTTATGAACTAGTTAAACTAAAAAAGTAACCACTATATTAACAAATGCACTGGAATGTTCAATTAGGGGAATAACTTATCCGAGTCTTCTTTCTGATTACCAACAATGGTATTTCCAACCCCCATTGATAATCATTCAGTTATCTTATTTTAGGTTTTTTTTTTTTTTTTTTTTTTCTTCGCAATGGTCTTTATCTTAATAACCTTTGAAATCTTAGCCAAATTCCAAAACAAAAATAAGTTTAAAAAAGTTAAATCTTTTTTAGTTTTCACGGCTTGACATAGTTTTTTTGTACAAAAGAAGAGACTTGACATAGATTTTGAAAATAATCTTCGAGAATAGATAACAAAATAAAGAAATTCAAATGGAAATAGTGTTTATGAGCCAAATTTTCAAAAACAAAAAACCAAAGACTAAGATCTCGTTTGATAACAACTTCGTTTTTTGTTTTAGTTTTTGAAATTTATGCTTGTTTTCTCTTAATTTCTTTATCATGGTTTTCACCTTTCATAAATAATCATTTGAATTCTTAGTCAAATTTCAAAAACAAAAATAAGTTTTTAAATACTACTTTTTTCGGTCTTCAAAACTTGACTTGGTCTTTGAAAATATTGGTTGAAAGTGATTAACAAAATAAAGAAAAGCATAGATTGTAATAGTGTTTATAAGTTTAACTTTCAAAAACAAAAAACCAAATGATTATCAAAACCGGTACATTTTTCTAATGTGGTGCTTATTTTTTGGGGGAGTTGAGACTTGAGTGAGCCTGTTTGTGTTCTAACCTAGTGTCTTTTTTTTCCATTACGCCTGTTATTCAACATGAAATAATGCTATGTGTAACTAGTATGTGTAACTGTATCTAGTTTTTTCTTAGTTCCACGGCCAAGATAAGAAGTGAAGTTCTGTCTCCATTTCGGTCTGTTCGGATGTTCTTTTATCTCACTTTCATCGCTAGTGGTACATTGGGAGGACTGATAGCAACCACTCAATTGCTTGCTGCATTGGCAAACTCATCAAGAGCTGAAGAAGTCCCTGATATTCTAAAAGGACTTGGAATAGACTTCGGAGCCGTAGCACTTTTTGCATTTCTTTATTTCAGAGAGAACAATGCAAAAAACGCTCAGTTGGCTAGACTATCAAGAGAAGAAAGCCTTTCCAATTTAAAGCTTCGAGTGGACCAAAACAAAGTTATTCCCATCAGCACTCTGCGTGGGATTGCTCGTCTGGTAATTTGTGCCGGCCCTGAATCCTTTATCATGGAAGCTTTTAAATCAAGTGAACCATTCACTGAACGACTTCTGGAACGGGGCGTTTTAGTCGTACCCCTTGCCACAGATGTCAGTACTTTGAATTTTGAGTTTGATGAACGTGAAGAGGTGAAGGATATGACCACCAAAAGGAAAAGACTCTGGCGCTTGACTCCAGTTTACATGACTGAGTGGTCAGCGTAAGTCATTATAATTAACATCCATTTTCACTATTGTTTCCCTTCTCCTTCCCTCGTGTAATTTTTCTTTTCTTGTAGGTGGTTAGATGAACAAAAGAAGTTGGCTGGAGTCTCCTCTGATTCTCCTGTGTAAGTCATCCTGGTTAAACTTTGAATTCAAATTGATGAAGTAAAATGGTTGCCTTTGTAGTGCTTGAACTCCCAATCAAGTTGTGTTGTGGTAATAATTGTTTGGTTTAAATACTAGTTTGAGCCCTATTCTTTTGATTGTTGTACGTTTAGTTTTAAAATATGGTCATTTTGATCTCTATATGCAAAATTTTAACATCAACTGGATATGTAATAGAAACCCTTTAGTACAAATTTATGTCTACATTTTAAGAAATTTAGTGAATGAAGTGTAATGCTAAAATTTCAATAGAGAAAATGAAGTAAAAATGAAAAAGAAAGGACCAAAATAGTTACCTTTTTATAAGTATAGAGACCAAAATGAAACAAATGTTGAAAATGAATAGACTAAAAAGAACCAATGTTAAAAGTACCGTGACCAAAGTGTTATTTAAACCCGAACATTTTCTTGTCTAGTTTTTTAATGAAATATTCTCATTAATCATCATTTTTGAGTTATCCAATTTGGAGTCCCCATAGTTGGTAATGTAAGGTGCACAGGAAAAAAGGAAAGGAAAGAAAATAAACTTTTTTGCTGAATCCAAGGCCAAACCCAGTTCACCTTACAGAAGTTAACCAATGTTTTTCTCTTTTTTGCGCATCATTCCTAGCCTAGCTATGTTAATGTTTGTCCTTGCAGGTATCTATCTCTGCGAATGGATGGCCGTGTTCGTGGTAGCGGCGTGGGCTATCCTCCATGGAATGCTCTTGTAGCACAATTACCCCCTGTAAAAGGACTATGGTCAGGTCTTCTAGATGGGATGGATGGAAGAGTTCTTTGAAGAAAAACACTTTCTCTTCTTCCAAGTGAGTACTCTTCTTGAATCAATTTATACACTCCTTTAATTATTTACCACAATTTTTCATTTGATTTCATTTAAAATCAACCTTAACAAAGTAGCAAGAAAAATTATAACCTAAAAACGAGAGATTAAAAACCAATCCTATTTATGAAAAATCTGATTCCAGCATTTCTCTTTAATATAGTGTTATTCCTTGTATTTAAAATAGTCTTATATACATGAAAGATTATGCAATAACCCTCGTATGATTTAGAGGGTTTAAATTGATTCACTCGTAAGAGTCTATAGTTTTAATTGAACAATCTTAAAGTTCAAAGTCATACCAATACAACCTCTATAGTTTAGAGGTTGAAATTTTCTTTCCTCTATTTATTTGAAACTATAAGACATGCATTTTGTGGTCGCAAATCTTCCATTTTAATGATTGAGATGAACTTAAAATCTCCTCTGTGATCTCATTTTGAGCTGGTATCAAACCTCCCATATTTTTGAGCTGGTATCAAACCTCCCATATGTAATTCATGTCCTATTTGTTTCAACATTCAAGGAACTACAAAATCTCTTACCATATATTTATATATATAGACAGAGTCCACTTTTTAGATATAAGGTCAATAATGTTCACTTCAGTAATTTTGGCCTTTTTTTGTATACAAACTTAATGTCAAACTATACGGCAGAATCATATTGTGTAATTCAGTTGTTGCCAAATTTCTTTCCAAAGCCGAACATTGTAGCCTAGCCTCGTCTAGTAACAGTTTGTTTTTAGTTTTTTCTGTTTTTGAAATTTATGTTACCTCTAATTTTTCCCTTTTTATGGTTCACTTTTTTTAAAAAATACATTTAAATTCCTAGTCAAATTCCAAAATCAAACTAGTTTTTAAAAATTATTTTTCTTTGTCATCAAATGTTGGCTTGGTTAGTAGGAAGTGGAATAACAAACCATAGAAACTTATTTTAAAGAAACACTTGGAAGTGGTGTTTTTAAACTTAATTTTCTAAAATAAAAAACTAAAGCTCCGTTTAATAACCATTTACTTTTAAGTATTAAAAACTATGCTTATAAACACTATTTTGCTCATAAATTTCTATGTTTTGTTATCCACCTACTATTAGTGTTGAAAACTAAAAACTTGTTTGTGTTTTTATAATTTGACTATGAATTCAAGTGTTTCTTTAACAAATGTGAAAACAATAATTGAATAATTAGGAAGAAACAAGCATAAAAATCAGTAGTGGTTATCTAATCGAGTCTATATTAATTTGTTCTTGTTGAACCTAGTGCTTAAACAGATAATATGAAATAGAAGCCCTTACCATGGAATGGAGTAAAGTTTTGCTATCATCTTTAAGCCATTCAAGATACTTCCAATACAAAAGTTCCAACACCATTGTCATGGTGGATTGGCTGAGATATACAGGTTTTTGTAAAGAGATAAAAAGGAGAGATTTAGCTTATCTGACACCATAATTCTTATTTTTTGTTATCTAGATTTAGTTATTCTTGCAAATTGTTAATAGTTAGTTTAATGTGTGTATTTGTAAAGCAATTATACATGGAGCTTGATGTAAATAACCATGTTTTCTTATGAATAAGTTGGCTCTAGAGTTTTTTTTTTTTTCCTTTCTTTTCTTTTCTTTCCCTTTTTCTCATTTCCTTTTGAGTTTATTTAAATGTTTTTTTTTTAAGTTGCG

mRNA sequence

TGACTCTTTTCTTCACCCTTCCTCATCTTAGCTCTATGGTGGCGGCAAATTCTGGGTATCGTGGCGGCATCGAGACCATCCCTCGAAATTTGCTTCCATTGACAAACTGTCAAATTATCTCACCACATGTCAATTCTCAGTTTCTCTCGAGTCGTCAATCATGGCGGTTTCCCTTTCCACGCCCAACATTTCCTCCTGCAACAACATTACTCGCCCTCCTCATTTCTCTCGCACTTCCGATTTCAAATTCCGCCGCCGTATCTGCTGCCACGTCCATCGGAAGACGCTCTCCTTTAATTCTAGCCCTACTCTACCAGATTCGCTTCCTTCTCTTCACTACGCCAGACGGAATTTAGCTAACTTCACTTGCTCGGCTGCTGATAAACCGGAAATCAGTTCCACGGCCAAGATAAGAAGTGAAGTTCTGTCTCCATTTCGGTCTGTTCGGATGTTCTTTTATCTCACTTTCATCGCTAGTGGTACATTGGGAGGACTGATAGCAACCACTCAATTGCTTGCTGCATTGGCAAACTCATCAAGAGCTGAAGAAGTCCCTGATATTCTAAAAGGACTTGGAATAGACTTCGGAGCCGTAGCACTTTTTGCATTTCTTTATTTCAGAGAGAACAATGCAAAAAACGCTCAGTTGGCTAGACTATCAAGAGAAGAAAGCCTTTCCAATTTAAAGCTTCGAGTGGACCAAAACAAAGTTATTCCCATCAGCACTCTGCGTGGGATTGCTCGTCTGGTAATTTGTGCCGGCCCTGAATCCTTTATCATGGAAGCTTTTAAATCAAGTGAACCATTCACTGAACGACTTCTGGAACGGGGCGTTTTAGTCGTACCCCTTGCCACAGATGTCAGTACTTTGAATTTTGAGTTTGATGAACGTGAAGAGGTGAAGGATATGACCACCAAAAGGAAAAGACTCTGGCGCTTGACTCCAGTTTACATGACTGAGTGGTCAGCGTGGTTAGATGAACAAAAGAAGTTGGCTGGAGTCTCCTCTGATTCTCCTGTGTATCTATCTCTGCGAATGGATGGCCGTGTTCGTGGTAGCGGCGTGGGCTATCCTCCATGGAATGCTCTTGTAGCACAATTACCCCCTGTAAAAGGACTATGGTCAGGTCTTCTAGATGGGATGGATGGAAGAGTTCTTTGAAGAAAAACACTTTCTCTTCTTCCAAATAATATGAAATAGAAGCCCTTACCATGGAATGGAGTAAAGTTTTGCTATCATCTTTAAGCCATTCAAGATACTTCCAATACAAAAGTTCCAACACCATTGTCATGGTGGATTGGCTGAGATATACAGGTTTTTGTAAAGAGATAAAAAGGAGAGATTTAGCTTATCTGACACCATAATTCTTATTTTTTGTTATCTAGATTTAGTTATTCTTGCAAATTGTTAATAGTTAGTTTAATGTGTGTATTTGTAAAGCAATTATACATGGAGCTTGATGTAAATAACCATGTTTTCTTATGAATAAGTTGGCTCTAGAGTTTTTTTTTTTTTCCTTTCTTTTCTTTTCTTTCCCTTTTTCTCATTTCCTTTTGAGTTTATTTAAATGTTTTTTTTTTAAGTTGCG

Coding sequence (CDS)

ATGGCGGTTTCCCTTTCCACGCCCAACATTTCCTCCTGCAACAACATTACTCGCCCTCCTCATTTCTCTCGCACTTCCGATTTCAAATTCCGCCGCCGTATCTGCTGCCACGTCCATCGGAAGACGCTCTCCTTTAATTCTAGCCCTACTCTACCAGATTCGCTTCCTTCTCTTCACTACGCCAGACGGAATTTAGCTAACTTCACTTGCTCGGCTGCTGATAAACCGGAAATCAGTTCCACGGCCAAGATAAGAAGTGAAGTTCTGTCTCCATTTCGGTCTGTTCGGATGTTCTTTTATCTCACTTTCATCGCTAGTGGTACATTGGGAGGACTGATAGCAACCACTCAATTGCTTGCTGCATTGGCAAACTCATCAAGAGCTGAAGAAGTCCCTGATATTCTAAAAGGACTTGGAATAGACTTCGGAGCCGTAGCACTTTTTGCATTTCTTTATTTCAGAGAGAACAATGCAAAAAACGCTCAGTTGGCTAGACTATCAAGAGAAGAAAGCCTTTCCAATTTAAAGCTTCGAGTGGACCAAAACAAAGTTATTCCCATCAGCACTCTGCGTGGGATTGCTCGTCTGGTAATTTGTGCCGGCCCTGAATCCTTTATCATGGAAGCTTTTAAATCAAGTGAACCATTCACTGAACGACTTCTGGAACGGGGCGTTTTAGTCGTACCCCTTGCCACAGATGTCAGTACTTTGAATTTTGAGTTTGATGAACGTGAAGAGGTGAAGGATATGACCACCAAAAGGAAAAGACTCTGGCGCTTGACTCCAGTTTACATGACTGAGTGGTCAGCGTGGTTAGATGAACAAAAGAAGTTGGCTGGAGTCTCCTCTGATTCTCCTGTGTATCTATCTCTGCGAATGGATGGCCGTGTTCGTGGTAGCGGCGTGGGCTATCCTCCATGGAATGCTCTTGTAGCACAATTACCCCCTGTAAAAGGACTATGGTCAGGTCTTCTAGATGGGATGGATGGAAGAGTTCTTTGA

Protein sequence

MAVSLSTPNISSCNNITRPPHFSRTSDFKFRRRICCHVHRKTLSFNSSPTLPDSLPSLHYARRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVSTLNFEFDEREEVKDMTTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

Homology

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BLAST of Bhi05G000097 vs. TAIR 10
Match: AT4G28740.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3493 (InterPro:IPR021883); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT1G02910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 370.2 bits (949), Expect = 1.8e-102
Identity = 195/307 (63.52%), Postives = 238/307 (77.52%), Query Frame = 0


Query: 32  RRICCHVHRKTLSF---NSSPTLPDSLPSLHYARRNLANFTCSAADKP-EISSTAKIRSE 91
           RRI  H HR+ L F   N   T+      L +      N  C AAD+P EIS+ A+IRSE
Sbjct: 47  RRISRHNHRERLDFSHRNHRLTITRKQQPLSF------NTVCFAADEPSEISADARIRSE 106

Query: 92  VLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVAL 151
           VLSPFRSVRMFFYL FIASG+LGGLIAT++L+ ALAN +R+ EV +I+KGLG+D GA +L
Sbjct: 107 VLSPFRSVRMFFYLAFIASGSLGGLIATSRLIGALANPARSGEVLEIVKGLGVDIGAASL 166

Query: 152 FAFLYFRENNAKNAQLARLSREESLSNLKLRVDQ-NKVIPISTLRGIARLVICAGPESFI 211
           FAFLYF EN  KNAQ+ARLSREE+L  LK+RV++ NKVI +  LRG+ARLVICAGP  FI
Sbjct: 167 FAFLYFNENKTKNAQMARLSREENLGKLKMRVEENNKVISVGDLRGVARLVICAGPAEFI 226

Query: 212 MEAFKSSEPFTERLLERGVLVVPLATDVSTLNFEFDEREEV-KDMTTKRKRLWRLTPVYM 271
            EAFK S+ +T+ L+ERGV+VV  ATD ++   EFDE +   ++M+ +RK+LWR+TPV++
Sbjct: 227 EEAFKRSKEYTQGLVERGVVVVAYATDGNSPVLEFDETDIADEEMSQRRKKLWRVTPVFV 286

Query: 272 TEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLL 331
            EW  WL+EQKKLA VSSDSPVYLSLR+DGRVR SGVGYPPW A VAQLPPVKG+W+GLL
Sbjct: 287 PEWEKWLNEQKKLANVSSDSPVYLSLRLDGRVRASGVGYPPWQAFVAQLPPVKGMWTGLL 346

Query: 332 DGMDGRV 333
           DGMDGRV
Sbjct: 347 DGMDGRV 347

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BLAST of Bhi05G000097 vs. TAIR 10
Match: AT1G02910.1 (tetratricopeptide repeat (TPR)-containing protein )

HSP 1 Score: 135.6 bits (340), Expect = 7.4e-32
Identity = 82/265 (30.94%), Postives = 131/265 (49.43%), Query Frame = 0


Query: 83  KIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDF 142
           K+ SEV +PFR VR FFY  F A+  +       +L+ A+     A  + +      I+ 
Sbjct: 187 KLISEVRAPFRGVRKFFYFAFAAAAGISMFFTVPRLVQAIRGGDGAPNLLETTGNAAINI 246

Query: 143 GAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGP 202
           G + +   L+  EN  +  Q+ +++R+E+LS L LR+  N+V+ +  LR   R VI AG 
Sbjct: 247 GGIVVMVSLFLWENKKEEEQMVQITRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGK 306

Query: 203 ESFIMEAFKSSEPFTERLLERGVLVVPL---------------------ATDVSTLNFEF 262
           +  +  A + ++ F   LL RGVL+VP+                     AT + ++  +F
Sbjct: 307 KETVTLAMQKADRFRTELLRRGVLLVPVVWGERKTPEIEKKGFGASSKAATSLPSIGEDF 366

Query: 263 DEREE--VKDMTTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRG 322
           D R +  V     K +  ++   V   EW  W+ +Q+   GV+    VY+ LR+DGRVR 
Sbjct: 367 DTRAQSVVAQSKLKGEIRFKAETVSPGEWERWIRDQQISEGVNPGDDVYIILRLDGRVRR 426

Query: 323 SGVGYPPWNALVAQLPPVKGLWSGL 325
           SG G P W  +  +LPP+  + S L
Sbjct: 427 SGRGMPDWAEISKELPPMDDVLSKL 451

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BLAST of Bhi05G000097 vs. ExPASy Swiss-Prot
Match: Q9SRY4 (Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LPA1 PE=1 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.0e-30
Identity = 82/265 (30.94%), Postives = 131/265 (49.43%), Query Frame = 0


Query: 83  KIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDF 142
           K+ SEV +PFR VR FFY  F A+  +       +L+ A+     A  + +      I+ 
Sbjct: 187 KLISEVRAPFRGVRKFFYFAFAAAAGISMFFTVPRLVQAIRGGDGAPNLLETTGNAAINI 246

Query: 143 GAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGP 202
           G + +   L+  EN  +  Q+ +++R+E+LS L LR+  N+V+ +  LR   R VI AG 
Sbjct: 247 GGIVVMVSLFLWENKKEEEQMVQITRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGK 306

Query: 203 ESFIMEAFKSSEPFTERLLERGVLVVPL---------------------ATDVSTLNFEF 262
           +  +  A + ++ F   LL RGVL+VP+                     AT + ++  +F
Sbjct: 307 KETVTLAMQKADRFRTELLRRGVLLVPVVWGERKTPEIEKKGFGASSKAATSLPSIGEDF 366

Query: 263 DEREE--VKDMTTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRG 322
           D R +  V     K +  ++   V   EW  W+ +Q+   GV+    VY+ LR+DGRVR 
Sbjct: 367 DTRAQSVVAQSKLKGEIRFKAETVSPGEWERWIRDQQISEGVNPGDDVYIILRLDGRVRR 426

Query: 323 SGVGYPPWNALVAQLPPVKGLWSGL 325
           SG G P W  +  +LPP+  + S L
Sbjct: 427 SGRGMPDWAEISKELPPMDDVLSKL 451

[Close]

BLAST of Bhi05G000097 vs. ExPASy TrEMBL
Match: A0A0A0L902 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G621430 PE=4 SV=1)

HSP 1 Score: 592.0 bits (1525), Expect = 1.5e-165
Identity = 305/338 (90.24%), Postives = 316/338 (93.49%), Query Frame = 0


Query: 1   MAVSLSTPNISSCNNITRPPHFSRT-----SDFKFRRRICCHVHRKTLSFNSSPTLPDSL 60
           MAVSL TP+ISS NNI  PPHFS T     SDFKFRRR  C VHRKT+SF+SSP LP SL
Sbjct: 1   MAVSLFTPSISSFNNIAPPPHFSPTPSHNASDFKFRRRSYCRVHRKTVSFSSSPRLPVSL 60

Query: 61  PSLHYARRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120
             L Y RRNLANF CSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT
Sbjct: 61  RFLVYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120

Query: 121 TQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180
           TQLL ALANSSRA+EVPDIL+GLG+DFGAVALFAFLYFRENNAKNAQLARLSREESLSNL
Sbjct: 121 TQLLGALANSSRADEVPDILEGLGVDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180

Query: 181 KLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVS 240
           KLRVDQNKVIPIS LRGIARLVICAGPESFI+EAFKSSEPFTERLLERGVLVVPLATDV+
Sbjct: 181 KLRVDQNKVIPISILRGIARLVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVT 240

Query: 241 TLNFEFDEREEVKDMTTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 300
           TLNFEFD+REEVKD+TTKRKRLWRLTPVYMTEWSAWLDEQKKLAGV+SDSPVYLSLRMDG
Sbjct: 241 TLNFEFDDREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVTSDSPVYLSLRMDG 300

Query: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 334
           RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

[Close]

BLAST of Bhi05G000097 vs. ExPASy TrEMBL
Match: A0A5D3BG35 (Protein LOW PSII ACCUMULATION 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00670 PE=4 SV=1)

HSP 1 Score: 580.5 bits (1495), Expect = 4.5e-162
Identity = 301/338 (89.05%), Postives = 313/338 (92.60%), Query Frame = 0


Query: 1   MAVSLSTPNISSCNNITRPPHFSRT-----SDFKFRRRICCHVHRKTLSFNSSPTLPDSL 60
           MAVSLST  +SS NNI  PPHFS T      DFKF RR C HVHRKT+SF+SSP LP SL
Sbjct: 1   MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSL 60

Query: 61  PSLHYARRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120
               Y RRNLAN+  SAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT
Sbjct: 61  RFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120

Query: 121 TQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180
           TQLL ALANSSRA+EVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL
Sbjct: 121 TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180

Query: 181 KLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVS 240
           KLRVDQNKVIPISTLRGIARLVICAGPESF++EAFKSSEPFTE+LLERGVLVVPLATDV+
Sbjct: 181 KLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVT 240

Query: 241 TLNFEFDEREEVKDMTTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 300
           TLNFEFDEREEVKD+T+KRK+LWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
Sbjct: 241 TLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 300

Query: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 334
           RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

[Close]

BLAST of Bhi05G000097 vs. ExPASy TrEMBL
Match: A0A1S3BHU5 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489822 PE=4 SV=1)

HSP 1 Score: 580.5 bits (1495), Expect = 4.5e-162
Identity = 301/338 (89.05%), Postives = 313/338 (92.60%), Query Frame = 0


Query: 1   MAVSLSTPNISSCNNITRPPHFSRT-----SDFKFRRRICCHVHRKTLSFNSSPTLPDSL 60
           MAVSLST  +SS NNI  PPHFS T      DFKF RR C HVHRKT+SF+SSP LP SL
Sbjct: 1   MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSL 60

Query: 61  PSLHYARRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120
               Y RRNLAN+  SAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT
Sbjct: 61  RFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120

Query: 121 TQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180
           TQLL ALANSSRA+EVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL
Sbjct: 121 TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180

Query: 181 KLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVS 240
           KLRVDQNKVIPISTLRGIARLVICAGPESF++EAFKSSEPFTE+LLERGVLVVPLATDV+
Sbjct: 181 KLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVT 240

Query: 241 TLNFEFDEREEVKDMTTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 300
           TLNFEFDEREEVKD+T+KRK+LWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
Sbjct: 241 TLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 300

Query: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 334
           RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

[Close]

BLAST of Bhi05G000097 vs. ExPASy TrEMBL
Match: A0A6J1HGA1 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111463810 PE=4 SV=1)

HSP 1 Score: 570.5 bits (1469), Expect = 4.7e-159
Identity = 292/338 (86.39%), Postives = 308/338 (91.12%), Query Frame = 0


Query: 1   MAVSLSTPNISSCNNITRPPHFSRT-----SDFKFRRRICCHVHRKTLSFNSSPTLPDSL 60
           M VS++   I SCNN  RPPH SRT      + KF RRICCHVHR  +SFN  P++ DSL
Sbjct: 45  MVVSMAI--IPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNPVSFNFGPSVADSL 104

Query: 61  PSLHYARRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120
             L Y RRNLA+ TCSA+DKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT
Sbjct: 105 RYLQYRRRNLASVTCSASDKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 164

Query: 121 TQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180
           TQLLAALANSSRAEEVPDIL GLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL
Sbjct: 165 TQLLAALANSSRAEEVPDILNGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 224

Query: 181 KLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVS 240
           KLRVDQNKVI ISTLRGIARLVICAGPESFIMEAFK+SEPFTERLLERGVLV+P ATD S
Sbjct: 225 KLRVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDAS 284

Query: 241 TLNFEFDEREEVKDMTTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 300
           +LNFEFDEREE+KD+TTKRKRLWRLTPVYM++WSAWLD+QKKLAGVSSDSPVYLSLRMDG
Sbjct: 285 SLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDG 344

Query: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 334
           RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 345 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 380

[Close]

BLAST of Bhi05G000097 vs. ExPASy TrEMBL
Match: A0A6J1HWD0 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466857 PE=4 SV=1)

HSP 1 Score: 565.5 bits (1456), Expect = 1.5e-157
Identity = 289/338 (85.50%), Postives = 306/338 (90.53%), Query Frame = 0


Query: 1   MAVSLSTPNISSCNNITRPPHFSRT-----SDFKFRRRICCHVHRKTLSFNSSPTLPDSL 60
           M VS++   I SCNN  RPPH SRT      + KF RRICCHVHR  +SFN  P++ DSL
Sbjct: 1   MVVSMAI--IPSCNNFGRPPHCSRTRSHNAHNLKFCRRICCHVHRNPVSFNFGPSVADSL 60

Query: 61  PSLHYARRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120
             L Y RRNLA+ TCSA+DKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT
Sbjct: 61  RYLQYRRRNLASVTCSASDKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120

Query: 121 TQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180
           TQLLAALAN+SRAEEVPDIL GLGIDFGAVA FAFLYFRENNAKNAQLARLSREESLSNL
Sbjct: 121 TQLLAALANTSRAEEVPDILNGLGIDFGAVAFFAFLYFRENNAKNAQLARLSREESLSNL 180

Query: 181 KLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVS 240
           KLRVDQNKVI ISTLRGIARLVICAGPES IMEAFK+SEPFTERLLERGVLV+P ATD S
Sbjct: 181 KLRVDQNKVITISTLRGIARLVICAGPESLIMEAFKTSEPFTERLLERGVLVIPFATDAS 240

Query: 241 TLNFEFDEREEVKDMTTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 300
           +LNFEFDEREE+KD+TTKRKRLWRLTPVYM++WSAWLD+QKKLAGVSSDSPVYLSLRMDG
Sbjct: 241 SLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDG 300

Query: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 334
           RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 336

The following BLAST results are available for this feature:

BLAST of Bhi05G000097 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28740.1	1.8e-102	63.52	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G02910.1	7.4e-32	30.94	tetratricopeptide repeat (TPR)-containing protein	[more]

BLAST of Bhi05G000097 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRY4	1.0e-30	30.94	Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Bhi05G000097 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L902	1.5e-165	90.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G621430 PE=4 SV=1	[more]
A0A5D3BG35	4.5e-162	89.05	Protein LOW PSII ACCUMULATION 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3BHU5	4.5e-162	89.05	protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1HGA1	4.7e-159	86.39	protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1HWD0	1.5e-157	85.50	protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021883	Protein LOW PSII ACCUMULATION 1-like	PFAM	PF11998	DUF3493	coord: 79..156 e-value: 2.9E-27 score: 94.7
None	No IPR available	PANTHER	PTHR35498:SF1	LOW PSII ACCUMULATION-LIKE PROTEIN	coord: 30..331
None	No IPR available	PANTHER	PTHR35498	PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC	coord: 30..331

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi05M000097	Bhi05M000097	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane