Bhi02G001729 (gene) Wax gourd (B227) v1

Overview


Name	Bhi02G001729
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	DNA-directed RNA polymerase subunit beta
Location	chr2: 56698135 .. 56698386 (+)
RNA-Seq Expression	Bhi02G001729
Synteny	Bhi02G001729

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTTTGGGCTCTAGAAGGATTTGGTGTTGCTCATATTTTACAAGAGATGCTTACTTATAAATCTGATCATATTAGAGCTCGGCAAGAAGTACTTGGTACTACAATCATTGGAGGAACAATACCTAAACCTGAGGATACTCCAGAATCTTTTCGATTGCTCGTTCGAGAATTACGATCTTTGGCTTTGGAACTGAATCATTTCCTTGTATCTGAGAAGAACATCCAGATTAATAGGAAGGAAGCTTAA

mRNA sequence

ATGGAGGTTTGGGCTCTAGAAGGATTTGGTGTTGCTCATATTTTACAAGAGATGCTTACTTATAAATCTGATCATATTAGAGCTCGGCAAGAAGTACTTGGTACTACAATCATTGGAGGAACAATACCTAAACCTGAGGATACTCCAGAATCTTTTCGATTGCTCGTTCGAGAATTACGATCTTTGGCTTTGGAACTGAATCATTTCCTTGTATCTGAGAAGAACATCCAGATTAATAGGAAGGAAGCTTAA

Coding sequence (CDS)

ATGGAGGTTTGGGCTCTAGAAGGATTTGGTGTTGCTCATATTTTACAAGAGATGCTTACTTATAAATCTGATCATATTAGAGCTCGGCAAGAAGTACTTGGTACTACAATCATTGGAGGAACAATACCTAAACCTGAGGATACTCCAGAATCTTTTCGATTGCTCGTTCGAGAATTACGATCTTTGGCTTTGGAACTGAATCATTTCCTTGTATCTGAGAAGAACATCCAGATTAATAGGAAGGAAGCTTAA

Protein sequence

MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELRSLALELNHFLVSEKNIQINRKEA

Homology

[Close]

BLAST of Bhi02G001729 vs. TAIR 10
Match: ATCG00190.1 (RNA polymerase subunit beta )

HSP 1 Score: 162.2 bits (409), Expect = 1.8e-40
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1    MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELR 60
            MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPED PESFRLLVRELR
Sbjct: 990  MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDAPESFRLLVRELR 1049

Query: 61   SLALELNHFLVSEKNIQINRKE 83
            SLALELNHFLVSEKN QINRKE
Sbjct: 1050 SLALELNHFLVSEKNFQINRKE 1071

[Close]

BLAST of Bhi02G001729 vs. ExPASy Swiss-Prot
Match: Q4VZP1 (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3 SV=2)

HSP 1 Score: 165.6 bits (418), Expect = 2.4e-40
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1    MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELR 60
            MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELR
Sbjct: 988  MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELR 1047

Query: 61   SLALELNHFLVSEKNIQINRKEA 84
            SLALELNHFLVSEKN QINRKEA
Sbjct: 1048 SLALELNHFLVSEKNFQINRKEA 1070

[Close]

BLAST of Bhi02G001729 vs. ExPASy Swiss-Prot
Match: A0ZZ27 (DNA-directed RNA polymerase subunit beta OS=Gossypium barbadense OX=3634 GN=rpoB PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 8.9e-40
Identity = 81/83 (97.59%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 1    MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELR 60
            MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPED PESFRLLVRELR
Sbjct: 988  MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDAPESFRLLVRELR 1047

Query: 61   SLALELNHFLVSEKNIQINRKEA 84
            SLALELNHFLVSEKN QINRKEA
Sbjct: 1048 SLALELNHFLVSEKNFQINRKEA 1070

[Close]

BLAST of Bhi02G001729 vs. ExPASy Swiss-Prot
Match: Q2L8Z9 (DNA-directed RNA polymerase subunit beta OS=Gossypium hirsutum OX=3635 GN=rpoB PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 8.9e-40
Identity = 81/83 (97.59%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 1    MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELR 60
            MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPED PESFRLLVRELR
Sbjct: 988  MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDAPESFRLLVRELR 1047

Query: 61   SLALELNHFLVSEKNIQINRKEA 84
            SLALELNHFLVSEKN QINRKEA
Sbjct: 1048 SLALELNHFLVSEKNFQINRKEA 1070

[Close]

BLAST of Bhi02G001729 vs. ExPASy Swiss-Prot
Match: A4QK10 (DNA-directed RNA polymerase subunit beta OS=Arabis hirsuta OX=78191 GN=rpoB PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 2.6e-39
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1    MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELR 60
            MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPED PESFRLLVRELR
Sbjct: 990  MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDAPESFRLLVRELR 1049

Query: 61   SLALELNHFLVSEKNIQINRKE 83
            SLALELNHFLVSEKN QINRKE
Sbjct: 1050 SLALELNHFLVSEKNFQINRKE 1071

[Close]

BLAST of Bhi02G001729 vs. ExPASy Swiss-Prot
Match: P50546 (DNA-directed RNA polymerase subunit beta OS=Arabidopsis thaliana OX=3702 GN=rpoB PE=3 SV=4)

HSP 1 Score: 162.2 bits (409), Expect = 2.6e-39
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1    MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELR 60
            MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPED PESFRLLVRELR
Sbjct: 990  MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDAPESFRLLVRELR 1049

Query: 61   SLALELNHFLVSEKNIQINRKE 83
            SLALELNHFLVSEKN QINRKE
Sbjct: 1050 SLALELNHFLVSEKNFQINRKE 1071

[Close]

BLAST of Bhi02G001729 vs. NCBI nr
Match: AHM89856.1 (RNA polymerase beta subunit [Lagenaria siceraria])

HSP 1 Score: 165.6 bits (418), Expect = 1.8e-37
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1    MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELR 60
            MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELR
Sbjct: 988  MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELR 1047

Query: 61   SLALELNHFLVSEKNIQINRKEA 84
            SLALELNHFLVSEKN QINRKEA
Sbjct: 1048 SLALELNHFLVSEKNFQINRKEA 1070

[Close]

BLAST of Bhi02G001729 vs. NCBI nr
Match: YP_009236272.1 (RNA polymerase beta subunit [Gynostemma pentaphyllum] >YP_009440149.1 RNA polymerase beta subunit [Gynostemma longipes] >AMF83983.1 RNA polymerase beta subunit [Gynostemma pentaphyllum] >ANI25177.1 RNA polymerase beta subunit [Gynostemma pentaphyllum] >ATG86892.1 RNA polymerase beta subunit [Gynostemma longipes])

HSP 1 Score: 165.6 bits (418), Expect = 1.8e-37
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1    MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELR 60
            MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELR
Sbjct: 988  MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELR 1047

Query: 61   SLALELNHFLVSEKNIQINRKEA 84
            SLALELNHFLVSEKN QINRKEA
Sbjct: 1048 SLALELNHFLVSEKNFQINRKEA 1070

[Close]

BLAST of Bhi02G001729 vs. NCBI nr
Match: YP_009752827.1 (RNA polymerase subunit beta [Baijiania yunnanensis] >QIT05899.1 RNA polymerase subunit beta [Baijiania yunnanensis])

HSP 1 Score: 165.6 bits (418), Expect = 1.8e-37
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1    MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELR 60
            MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELR
Sbjct: 988  MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELR 1047

Query: 61   SLALELNHFLVSEKNIQINRKEA 84
            SLALELNHFLVSEKN QINRKEA
Sbjct: 1048 SLALELNHFLVSEKNFQINRKEA 1070

[Close]

BLAST of Bhi02G001729 vs. NCBI nr
Match: QJR52948.1 (RNA polymerase beta subunit [Herpetospermum pedunculosum])

HSP 1 Score: 165.6 bits (418), Expect = 1.8e-37
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1    MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELR 60
            MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELR
Sbjct: 988  MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELR 1047

Query: 61   SLALELNHFLVSEKNIQINRKEA 84
            SLALELNHFLVSEKN QINRKEA
Sbjct: 1048 SLALELNHFLVSEKNFQINRKEA 1070

[Close]

BLAST of Bhi02G001729 vs. NCBI nr
Match: YP_009753697.1 (RNA polymerase subunit beta [Trichosanthes nervifolia] >QIT05308.1 RNA polymerase subunit beta [Trichosanthes nervifolia])

HSP 1 Score: 165.6 bits (418), Expect = 1.8e-37
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1    MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELR 60
            MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELR
Sbjct: 988  MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELR 1047

Query: 61   SLALELNHFLVSEKNIQINRKEA 84
            SLALELNHFLVSEKN QINRKEA
Sbjct: 1048 SLALELNHFLVSEKNFQINRKEA 1070

[Close]

BLAST of Bhi02G001729 vs. ExPASy TrEMBL
Match: A0A218KG28 (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus var. hardwickii OX=319220 GN=rpoB PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 8.7e-38
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1    MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELR 60
            MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELR
Sbjct: 988  MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELR 1047

Query: 61   SLALELNHFLVSEKNIQINRKEA 84
            SLALELNHFLVSEKN QINRKEA
Sbjct: 1048 SLALELNHFLVSEKNFQINRKEA 1070

[Close]

BLAST of Bhi02G001729 vs. ExPASy TrEMBL
Match: A0A1X9Q1B9 (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 8.7e-38
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1    MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELR 60
            MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELR
Sbjct: 988  MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELR 1047

Query: 61   SLALELNHFLVSEKNIQINRKEA 84
            SLALELNHFLVSEKN QINRKEA
Sbjct: 1048 SLALELNHFLVSEKNFQINRKEA 1070

[Close]

BLAST of Bhi02G001729 vs. ExPASy TrEMBL
Match: A0A249RZI0 (DNA-directed RNA polymerase subunit beta OS=Cucumis melo var. cantalupensis OX=3658 GN=rpoB PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 8.7e-38
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1    MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELR 60
            MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELR
Sbjct: 988  MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELR 1047

Query: 61   SLALELNHFLVSEKNIQINRKEA 84
            SLALELNHFLVSEKN QINRKEA
Sbjct: 1048 SLALELNHFLVSEKNFQINRKEA 1070

[Close]

BLAST of Bhi02G001729 vs. ExPASy TrEMBL
Match: A0A1S4ETZ9 (DNA-directed RNA polymerase subunit beta OS=Cucumis melo OX=3656 GN=rpoB PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 8.7e-38
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1    MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELR 60
            MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELR
Sbjct: 988  MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELR 1047

Query: 61   SLALELNHFLVSEKNIQINRKEA 84
            SLALELNHFLVSEKN QINRKEA
Sbjct: 1048 SLALELNHFLVSEKNFQINRKEA 1070

[Close]

BLAST of Bhi02G001729 vs. ExPASy TrEMBL
Match: A0A109WXU0 (DNA-directed RNA polymerase subunit beta OS=Gynostemma pentaphyllum OX=182084 GN=rpoB PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 8.7e-38
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1    MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELR 60
            MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELR
Sbjct: 988  MEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFRLLVRELR 1047

Query: 61   SLALELNHFLVSEKNIQINRKEA 84
            SLALELNHFLVSEKN QINRKEA
Sbjct: 1048 SLALELNHFLVSEKNFQINRKEA 1070

The following BLAST results are available for this feature:

BLAST of Bhi02G001729 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00190.1	1.8e-40	97.56	RNA polymerase subunit beta	[more]

BLAST of Bhi02G001729 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP1	2.4e-40	98.80	DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3...	[more]
A0ZZ27	8.9e-40	97.59	DNA-directed RNA polymerase subunit beta OS=Gossypium barbadense OX=3634 GN=rpoB...	[more]
Q2L8Z9	8.9e-40	97.59	DNA-directed RNA polymerase subunit beta OS=Gossypium hirsutum OX=3635 GN=rpoB P...	[more]
A4QK10	2.6e-39	97.56	DNA-directed RNA polymerase subunit beta OS=Arabis hirsuta OX=78191 GN=rpoB PE=3...	[more]
P50546	2.6e-39	97.56	DNA-directed RNA polymerase subunit beta OS=Arabidopsis thaliana OX=3702 GN=rpoB...	[more]

BLAST of Bhi02G001729 vs. NCBI nr


Match Name	E-value	Identity	Description
AHM89856.1	1.8e-37	98.80	RNA polymerase beta subunit [Lagenaria siceraria]	[more]
YP_009236272.1	1.8e-37	98.80	RNA polymerase beta subunit [Gynostemma pentaphyllum] >YP_009440149.1 RNA polyme...	[more]
YP_009752827.1	1.8e-37	98.80	RNA polymerase subunit beta [Baijiania yunnanensis] >QIT05899.1 RNA polymerase s...	[more]
QJR52948.1	1.8e-37	98.80	RNA polymerase beta subunit [Herpetospermum pedunculosum]	[more]
YP_009753697.1	1.8e-37	98.80	RNA polymerase subunit beta [Trichosanthes nervifolia] >QIT05308.1 RNA polymeras...	[more]

BLAST of Bhi02G001729 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A218KG28	8.7e-38	98.80	DNA-directed RNA polymerase subunit beta OS=Cucumis sativus var. hardwickii OX=3...	[more]
A0A1X9Q1B9	8.7e-38	98.80	DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3...	[more]
A0A249RZI0	8.7e-38	98.80	DNA-directed RNA polymerase subunit beta OS=Cucumis melo var. cantalupensis OX=3...	[more]
A0A1S4ETZ9	8.7e-38	98.80	DNA-directed RNA polymerase subunit beta OS=Cucumis melo OX=3656 GN=rpoB PE=3 SV...	[more]
A0A109WXU0	8.7e-38	98.80	DNA-directed RNA polymerase subunit beta OS=Gynostemma pentaphyllum OX=182084 GN...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007641	RNA polymerase Rpb2, domain 7	PFAM	PF04560	RNA_pol_Rpb2_7	coord: 1..69 e-value: 5.1E-17 score: 62.0
IPR015712	DNA-directed RNA polymerase, subunit 2	PANTHER	PTHR20856	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	coord: 1..75
None	No IPR available	PANTHER	PTHR20856:SF30	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA	coord: 1..75
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 1..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi02M001729	Bhi02M001729	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0032549	ribonucleoside binding