MELO3C014726 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C014726
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_81
Location	chr5 : 157926 .. 158180 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATTTAGCAGCTTAATAGTGTTATCGGTCGCTCATTTATCGGCGGATGTTTCGCAATCCATTGCTCGCTTTCCAGATCCCCTCACCAGCCACCAACTTCTTTACCTTCTCTTCGCTTTCCCTCTTCAACAGCTCTCTCGACTTGCCCTCTCTCTCTGGACCTTCTTCTGTGTTCCTCCACCTGGTTCTTTCTACTATTACTACTATTCCTCTGACTCCGATCTCTCTTCTTACGCCTATGCTTCCGATTGA

mRNA sequence

ATGGTATTTAGCAGCTTAATAGTGTTATCGGTCGCTCATTTATCGGCGGATGTTTCGCAATCCATTGCTCGCTTTCCAGATCCCCTCACCAGCCACCAACTTCTTTACCTTCTCTTCGCTTTCCCTCTTCAACAGCTCTCTCGACTTGCCCTCTCTCTCTGGACCTTCTTCTGTGTTCCTCCACCTGGTTCTTTCTACTATTACTACTATTCCTCTGACTCCGATCTCTCTTCTTACGCCTATGCTTCCGATTGA

Coding sequence (CDS)

ATGGTATTTAGCAGCTTAATAGTGTTATCGGTCGCTCATTTATCGGCGGATGTTTCGCAATCCATTGCTCGCTTTCCAGATCCCCTCACCAGCCACCAACTTCTTTACCTTCTCTTCGCTTTCCCTCTTCAACAGCTCTCTCGACTTGCCCTCTCTCTCTGGACCTTCTTCTGTGTTCCTCCACCTGGTTCTTTCTACTATTACTACTATTCCTCTGACTCCGATCTCTCTTCTTACGCCTATGCTTCCGATTGA

Protein sequence

MVFSSLIVLSVAHLSADVSQSIARFPDPLTSHQLLYLLFAFPLQQLSRLALSLWTFFCVPPPGSFYYYYYSSDSDLSSYAYASD*

Homology

[Close]

BLAST of MELO3C014726 vs. TrEMBL
Match: A0A0A0L0B8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268060 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 4.6e-35
Identity = 75/78 (96.15%), Postives = 75/78 (96.15%), Query Frame = 1


Query: 7   IVLSVAHLSADVSQSIARFPDPLTSHQLLYLLFAFPLQQLSRLALSLWTFFCVPPPGSFY 66
           IVLSVAHLSAD SQSIARFPDPLTSHQLLYLLFAFPLQQLSRLALSLWT FCVPPPGSFY
Sbjct: 63  IVLSVAHLSADASQSIARFPDPLTSHQLLYLLFAFPLQQLSRLALSLWTLFCVPPPGSFY 122

Query: 67  YYYYSSDSDLSSYAYASD 85
           YYYYSSDSDLSSY YASD
Sbjct: 123 YYYYSSDSDLSSYDYASD 140

[Close]

BLAST of MELO3C014726 vs. TrEMBL
Match: M5W0H4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012539mg PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.0e-18
Identity = 51/78 (65.38%), Postives = 61/78 (78.21%), Query Frame = 1


Query: 1   MVFSSLIVLSVAHLSADVSQSIARFPDPLTSHQLLYLLFAFPLQQLSRLALSLWTFFCVP 60
           MVF+SL+V+SVAH S ++ Q +A  P+ L+SHQLL L+F FPLQQL RLAL LWTF CVP
Sbjct: 74  MVFNSLMVVSVAHTSTEMWQYLACLPERLSSHQLLDLVFCFPLQQLGRLALCLWTFLCVP 133

Query: 61  PPGSFYYYYYSSDSDLSS 79
           PP S+Y Y Y SDSD SS
Sbjct: 134 PPDSYYSYSY-SDSDASS 150

[Close]

BLAST of MELO3C014726 vs. TrEMBL
Match: B9GLC9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s04070g PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 6.6e-18
Identity = 53/79 (67.09%), Postives = 61/79 (77.22%), Query Frame = 1


Query: 1  MVFSSLIVLSVAHLSADVSQSIA--RFPDPLTSHQLLYLLFAFPLQQLSRLALSLWTFFC 60
          MVF+SLIVLSVAH+SADV Q IA  RF D ++SHQLL L+  FPLQQL RLAL +WTF C
Sbjct: 1  MVFNSLIVLSVAHVSADVWQQIACIRFQDRVSSHQLLDLVCCFPLQQLGRLALFVWTFLC 60

Query: 61 VPPPGSFY--YYYYSSDSD 76
          +PPP SF   Y YYS+ SD
Sbjct: 61 LPPPDSFLSSYSYYSTSSD 79

[Close]

BLAST of MELO3C014726 vs. TrEMBL
Match: W9SZJ5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_019129 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.3e-17
Identity = 47/78 (60.26%), Postives = 57/78 (73.08%), Query Frame = 1


Query: 1  MVFSSLIVLSVAHLSADVSQSIARFPDPLTSHQLLYLLFAFPLQQLSRLALSLWTFFCVP 60
          MVF+SL+V+SVAH SAD  Q +A  P+ L+SHQLL L+  FPLQQL RLAL +WTF C+P
Sbjct: 1  MVFNSLMVMSVAHASADAWQCLACLPERLSSHQLLDLVLCFPLQQLGRLALCIWTFLCLP 60

Query: 61 PPGSFYYYYYSSDSDLSS 79
          PP +   Y YSSD   SS
Sbjct: 61 PPDTLNSYSYSSDDSDSS 78

[Close]

BLAST of MELO3C014726 vs. TrEMBL
Match: B9SBP8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0343440 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 5.6e-17
Identity = 52/87 (59.77%), Postives = 60/87 (68.97%), Query Frame = 1


Query: 1  MVFSSLIVLSVAHLSADVSQSIARFP--DPLTSHQLLYLLFAFPLQQLSRLALSLWTFFC 60
          MVF+SLI+ SVAH SAD+ Q IAR    D ++SHQLL L+  FPLQQL   AL LWTF C
Sbjct: 1  MVFNSLIIASVAHTSADLWQEIARIQVQDRISSHQLLDLICCFPLQQLGSFALWLWTFLC 60

Query: 61 VPPPGSFY-YYYYSSDSDLSSYAYASD 85
          +PPP SFY Y YYSS +  SS  Y  D
Sbjct: 61 LPPPDSFYPYTYYSSTTTTSSSDYGLD 87

[Close]

BLAST of MELO3C014726 vs. TAIR10
Match: AT1G55365.1 (AT1G55365.1 unknown protein)

HSP 1 Score: 66.2 bits (160), Expect = 1.1e-11
Identity = 36/80 (45.00%), Postives = 45/80 (56.25%), Query Frame = 1


Query: 1  MVFSSLIVLSVAHLSADVSQSIARFPDP--LTSHQLLYLLFAFPLQQLSRLALSLWTFFC 60
          MVF+S +V++VA +S D  Q I R P    + + QL  +   FP+ QLSR  L LWTF C
Sbjct: 1  MVFNSAMVMAVAEVSTDTWQLIWRVPSSQRIDTEQLFDIAVCFPIHQLSRFVLCLWTFMC 60

Query: 61 VPPPGSFYYYYYSSDSDLSS 79
          +P   SFY Y Y + S  SS
Sbjct: 61 LPSSDSFYSYTYETLSASSS 80

[Close]

BLAST of MELO3C014726 vs. TAIR10
Match: AT5G56520.1 (AT5G56520.1 unknown protein)

HSP 1 Score: 64.7 bits (156), Expect = 3.2e-11
Identity = 33/77 (42.86%), Postives = 43/77 (55.84%), Query Frame = 1


Query: 1  MVFSSLIVLSVAHLSADVSQSIARFP--DPLTSHQLLYLLFAFPLQQLSRLALSLWTFFC 60
          MVF    V+SVAH+SA++ Q +   P  D ++S ++L L+  FPLQQL R  L  W + C
Sbjct: 1  MVFRGDTVVSVAHISAEIFQRLRWIPPSDRISSGEMLQLVCCFPLQQLGRFVLWFWNYIC 60

Query: 61 VPPPGSFYYYYYSSDSD 76
          VPPP   Y+     D D
Sbjct: 61 VPPPEILYFDGRRDDDD 77

[Close]

BLAST of MELO3C014726 vs. NCBI nr
Match: gi|659097940|ref|XP_008449890.1| (PREDICTED: uncharacterized protein LOC103491633 [Cucumis melo])

HSP 1 Score: 171.4 bits (433), Expect = 6.8e-40
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1


Query: 1  MVFSSLIVLSVAHLSADVSQSIARFPDPLTSHQLLYLLFAFPLQQLSRLALSLWTFFCVP 60
          MVFSSLIVLSVAHLSADVSQSIARFPDPLTSHQLLYLLFAFPLQQLSRLALSLWTFFCVP
Sbjct: 1  MVFSSLIVLSVAHLSADVSQSIARFPDPLTSHQLLYLLFAFPLQQLSRLALSLWTFFCVP 60

Query: 61 PPGSFYYYYYSSDSDLSSYAYASD 85
          PPGSFYYYYYSSDSDLSSYAYASD
Sbjct: 61 PPGSFYYYYYSSDSDLSSYAYASD 84

[Close]

BLAST of MELO3C014726 vs. NCBI nr
Match: gi|700198864|gb|KGN54022.1| (hypothetical protein Csa_4G268060 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 6.6e-35
Identity = 75/78 (96.15%), Postives = 75/78 (96.15%), Query Frame = 1


Query: 7   IVLSVAHLSADVSQSIARFPDPLTSHQLLYLLFAFPLQQLSRLALSLWTFFCVPPPGSFY 66
           IVLSVAHLSAD SQSIARFPDPLTSHQLLYLLFAFPLQQLSRLALSLWT FCVPPPGSFY
Sbjct: 63  IVLSVAHLSADASQSIARFPDPLTSHQLLYLLFAFPLQQLSRLALSLWTLFCVPPPGSFY 122

Query: 67  YYYYSSDSDLSSYAYASD 85
           YYYYSSDSDLSSY YASD
Sbjct: 123 YYYYSSDSDLSSYDYASD 140

[Close]

BLAST of MELO3C014726 vs. NCBI nr
Match: gi|694315516|ref|XP_009375970.1| (PREDICTED: uncharacterized protein LOC103964725 [Pyrus x bretschneideri])

HSP 1 Score: 102.8 bits (255), Expect = 3.0e-19
Identity = 52/78 (66.67%), Postives = 62/78 (79.49%), Query Frame = 1


Query: 1  MVFSSLIVLSVAHLSADVSQSIARFPDPLTSHQLLYLLFAFPLQQLSRLALSLWTFFCVP 60
          MVF+S++V SVAHLSA++ Q +A  P+ ++SHQLL L+F FPLQQL RLA  LWTF CVP
Sbjct: 1  MVFNSVMVESVAHLSAEMWQELACLPERMSSHQLLDLIFCFPLQQLGRLAFCLWTFLCVP 60

Query: 61 PPGSFYYYYYSSDSDLSS 79
          PP S YYYY SSDSD SS
Sbjct: 61 PPDS-YYYYSSSDSDDSS 77

[Close]

BLAST of MELO3C014726 vs. NCBI nr
Match: gi|657951143|ref|XP_008351351.1| (PREDICTED: uncharacterized protein LOC103414759 [Malus domestica])

HSP 1 Score: 102.1 bits (253), Expect = 5.1e-19
Identity = 52/78 (66.67%), Postives = 62/78 (79.49%), Query Frame = 1


Query: 1  MVFSSLIVLSVAHLSADVSQSIARFPDPLTSHQLLYLLFAFPLQQLSRLALSLWTFFCVP 60
          MVF+S++V SVAHLSA++ Q +A  P+ ++SHQLL L+F FPLQQL RLA  LWTF CVP
Sbjct: 1  MVFNSVMVESVAHLSAEMWQYLACLPERMSSHQLLDLIFCFPLQQLGRLAFCLWTFLCVP 60

Query: 61 PPGSFYYYYYSSDSDLSS 79
          PP S YYYY SSDSD SS
Sbjct: 61 PPDS-YYYYSSSDSDDSS 77

[Close]

BLAST of MELO3C014726 vs. NCBI nr
Match: gi|1009124014|ref|XP_015878844.1| (PREDICTED: uncharacterized protein LOC107415082 [Ziziphus jujuba])

HSP 1 Score: 100.5 bits (249), Expect = 1.5e-18
Identity = 48/78 (61.54%), Postives = 58/78 (74.36%), Query Frame = 1


Query: 1  MVFSSLIVLSVAHLSADVSQSIARFPDPLTSHQLLYLLFAFPLQQLSRLALSLWTFFCVP 60
          MVF+S++VLSVAH+SAD  Q +   PD L+SHQLL L+  FPLQQL RLAL LWTF C+P
Sbjct: 1  MVFNSMLVLSVAHVSADAWQCLTCIPDRLSSHQLLDLICCFPLQQLGRLALCLWTFLCLP 60

Query: 61 PPGSFYYYYYSSDSDLSS 79
          PP SFY Y Y+   D S+
Sbjct: 61 PPDSFYSYAYTDSDDSST 78

The following BLAST results are available for this feature:

BLAST of MELO3C014726 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0B8_CUCSA	4.6e-35	96.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268060 PE=4 SV=1	[more]
M5W0H4_PRUPE	1.0e-18	65.38	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012539mg PE=4 SV=1	[more]
B9GLC9_POPTR	6.6e-18	67.09	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s04070g PE=4 SV=1	[more]
W9SZJ5_9ROSA	4.3e-17	60.26	Uncharacterized protein OS=Morus notabilis GN=L484_019129 PE=4 SV=1	[more]
B9SBP8_RICCO	5.6e-17	59.77	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0343440 PE=4 SV=1	[more]

BLAST of MELO3C014726 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G55365.1	1.1e-11	45.00	unknown protein	[more]
AT5G56520.1	3.2e-11	42.86	unknown protein	[more]

BLAST of MELO3C014726 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659097940\|ref\|XP_008449890.1\|	6.8e-40	100.00	PREDICTED: uncharacterized protein LOC103491633 [Cucumis melo]	[more]
gi\|700198864\|gb\|KGN54022.1\|	6.6e-35	96.15	hypothetical protein Csa_4G268060 [Cucumis sativus]	[more]
gi\|694315516\|ref\|XP_009375970.1\|	3.0e-19	66.67	PREDICTED: uncharacterized protein LOC103964725 [Pyrus x bretschneideri]	[more]
gi\|657951143\|ref\|XP_008351351.1\|	5.1e-19	66.67	PREDICTED: uncharacterized protein LOC103414759 [Malus domestica]	[more]
gi\|1009124014\|ref\|XP_015878844.1\|	1.5e-18	61.54	PREDICTED: uncharacterized protein LOC107415082 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU44183	melon EST collection version 4.0	transcribed_cluster
MU59913	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C014726T1	MELO3C014726T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU44183	MU44183	transcribed_cluster
MU59913	MU59913	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35104	FAMILY NOT NAMED	coord: 2..84 score: 2.7
None	No IPR available	PANTHER	PTHR35104:SF1	SUBFAMILY NOT NAMED	coord: 2..84 score: 2.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C014726	Csa4G268060	Cucumber (Chinese Long) v2	cumeB295
MELO3C014726	Cla003126	Watermelon (97103) v1	mewmB419
MELO3C014726	ClCG02G024390	Watermelon (Charleston Gray)	mewcgB376
MELO3C014726	Cla97C02G050650	Watermelon (97103) v2	mewmbB377
MELO3C014726	Bhi10G000400	Wax gourd	mewgoB484
MELO3C014726	CSPI04G12530	Wild cucumber (PI 183967)	cpimeB289
MELO3C014726	Cucsa.152720	Cucumber (Gy14) v1	cgymeB257
MELO3C014726	Lsi10G009200	Bottle gourd (USVL1VR-Ls)	lsimeB072
MELO3C014726	Cp4.1LG05g05660	Cucurbita pepo (Zucchini)	cpemeB696
MELO3C014726	Carg13975	Silver-seed gourd	carmeB0512

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C014726	Cucurbita maxima (Rimu)	cmameB521
MELO3C014726	Cucurbita maxima (Rimu)	cmameB572
MELO3C014726	Cucurbita moschata (Rifu)	cmomeB509
MELO3C014726	Cucurbita moschata (Rifu)	cmomeB561
MELO3C014726	Cucurbita pepo (Zucchini)	cpemeB278
MELO3C014726	Cucumber (Gy14) v2	cgybmeB250
MELO3C014726	Cucumber (Chinese Long) v3	cucmeB295