MELO3C010414 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C010414
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Transmembrane protein
Location	chr7 : 9970291 .. 9971216 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAGCCAACCTATGGTGATGATGGTGAACTTCTAGATGGTGGATTTGATATGAGTACTGGTGGAATTTGTGGGTTTGTCTTCTTTCTTCTTAATGTATAACCATTACATGTCAGTTTCATGTATGTTTTTTATCTCCATTACATAAAGAATAGTTGTTGAGTATAAACCTAGCATATTTAATTTTTCTGTGACCCAAGTTTAAGGTGAGCGATATATTGCTTTGAAACTTTCAATTTTCTTTCTTGAACATATTACAGGATAGTGATACATAAGCAAGCTTGCTGCTTTAAGAGGAACATGCTTATTGGGTTTTTAAGTTTTCTGGTAAATGCTTCTGCTCCACTTGTTGCTTTGATCAGTTGATATGTTTACCATCACCAATGTGACAGAACAATTTTCTTATGGTAATATTTTTGGCCTACATAATATTGAGTGGTTTTGTGTGGGGTTTTTCCATTCAGTGGAAAATGTGGTGTTTATAATATGAATGAAGTAATTGAAAGAAACATATGGCTTTTCAATGACTTTTTTTCTTCTTTTAATCGTTTTATGAATCTTGTTCTGTCGCCTGCTTTTTTTTTTTTTGTTGTGTAAAACTAAGCATCCCTTCTCTCATTTCAACCTTTCTTTTTTAGTTAGTAATTGGTGATCTGTTATGTAACAAGCATTTGTTGTTTGTGGTTCTTCCTTGTTCTTTTACCGAAAAAATTATGGATTGACTTTAAAAAGAGGTTGGAATCCAATATGGTTAGCCTTCCATCTGTCAACAATTTATTGACATTTCAATAATTAATCGAAACATCTTGATGGTTTGTCTTGTTTTTTTTTGCAGCTACATGCATAATGTGATCTACATTACAAGGTTTGTGCAAATAATGTCAATCCTTTCCGAGAAGTTTTGGTACACAACCTTGTGGTAA

mRNA sequence

ATGGCAAAGCCAACCTATGGTGATGATGGTGAACTTCTAGATGGTGGATTTGATATGAGTACTGGTGGAATTTGTGGCTACATGCATAATGTGATCTACATTACAAGGTTTGTGCAAATAATGTCAATCCTTTCCGAGAAGTTTTGGTACACAACCTTGTGGTAA

Coding sequence (CDS)

ATGGCAAAGCCAACCTATGGTGATGATGGTGAACTTCTAGATGGTGGATTTGATATGAGTACTGGTGGAATTTGTGGCTACATGCATAATGTGATCTACATTACAAGGTTTGTGCAAATAATGTCAATCCTTTCCGAGAAGTTTTGGTACACAACCTTGTGGTAA

Protein sequence

MAKPTYGDDGELLDGGFDMSTGGICGYMHNVIYITRFVQIMSILSEKFWYTTLW*

Homology

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BLAST of MELO3C010414 vs. Swiss-Prot
Match: TM208_DANRE (Transmembrane protein 208 OS=Danio rerio GN=tmem208 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.9e-07
Identity = 26/55 (47.27%), Postives = 35/55 (63.64%), Query Frame = 1


Query: 1   MAKPTYGDDGELLDGGFDMS-TGGICGYMHNVIYITRFVQIMSILSEKFWYTTLW 55
           MAKP + +DG LLDGG D++   G+  ++ +VI +T  VQ++S LS  FWY  LW
Sbjct: 74  MAKPAFAEDGSLLDGGIDLNMEQGMAEHLKDVILLTAIVQVLSTLSSYFWY--LW 126

[Close]

BLAST of MELO3C010414 vs. TrEMBL
Match: V4SSH1_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100129242mg PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.0e-19
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1


Query: 1   MAKPTYGDDGELLDGGFDMSTGGICGYMHNVIYITRFVQIMSILSEKFWYTTL 54
           MAKPTY DDGEL+DGGFDMSTGGICGY+H+VIYIT FVQ+MSILSEKFWYT L
Sbjct: 68  MAKPTYTDDGELIDGGFDMSTGGICGYLHDVIYITSFVQVMSILSEKFWYTYL 120

[Close]

BLAST of MELO3C010414 vs. TrEMBL
Match: A0A067EGT6_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0306652mg PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.0e-19
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1


Query: 1   MAKPTYGDDGELLDGGFDMSTGGICGYMHNVIYITRFVQIMSILSEKFWYTTL 54
           MAKPTY DDGEL+DGGFDMSTGGICGY+H+VIYIT FVQ+MSILSEKFWYT L
Sbjct: 68  MAKPTYTDDGELIDGGFDMSTGGICGYLHDVIYITSFVQVMSILSEKFWYTYL 120

[Close]

BLAST of MELO3C010414 vs. TrEMBL
Match: A0A067EQC8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0306652mg PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.0e-19
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1


Query: 1   MAKPTYGDDGELLDGGFDMSTGGICGYMHNVIYITRFVQIMSILSEKFWYTTL 54
           MAKPTY DDGEL+DGGFDMSTGGICGY+H+VIYIT FVQ+MSILSEKFWYT L
Sbjct: 68  MAKPTYTDDGELIDGGFDMSTGGICGYLHDVIYITSFVQVMSILSEKFWYTYL 120

[Close]

BLAST of MELO3C010414 vs. TrEMBL
Match: V4SML5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v100129242mg PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.0e-19
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1


Query: 1   MAKPTYGDDGELLDGGFDMSTGGICGYMHNVIYITRFVQIMSILSEKFWYTTL 54
           MAKPTY DDGEL+DGGFDMSTGGICGY+H+VIYIT FVQ+MSILSEKFWYT L
Sbjct: 68  MAKPTYTDDGELIDGGFDMSTGGICGYLHDVIYITSFVQVMSILSEKFWYTYL 120

[Close]

BLAST of MELO3C010414 vs. TrEMBL
Match: A0A067EDE0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0306652mg PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.0e-19
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1


Query: 1   MAKPTYGDDGELLDGGFDMSTGGICGYMHNVIYITRFVQIMSILSEKFWYTTL 54
           MAKPTY DDGEL+DGGFDMSTGGICGY+H+VIYIT FVQ+MSILSEKFWYT L
Sbjct: 68  MAKPTYTDDGELIDGGFDMSTGGICGYLHDVIYITSFVQVMSILSEKFWYTYL 120

[Close]

BLAST of MELO3C010414 vs. TAIR10
Match: AT2G23940.1 (AT2G23940.1 Protein of unknown function (DUF788))

HSP 1 Score: 89.4 bits (220), Expect = 7.7e-19
Identity = 39/53 (73.58%), Postives = 45/53 (84.91%), Query Frame = 1


Query: 1   MAKPTYGDDGELLDGGFDMSTGGICGYMHNVIYITRFVQIMSILSEKFWYTTL 54
           MAKP+  DDGEL+DGGFDM+TGGICGY+H+VIYIT FVQ+ SI++ KFWYT L
Sbjct: 68  MAKPSVTDDGELIDGGFDMTTGGICGYLHDVIYITCFVQLASIITGKFWYTYL 120

[Close]

BLAST of MELO3C010414 vs. TAIR10
Match: AT4G30500.1 (AT4G30500.1 Protein of unknown function (DUF788))

HSP 1 Score: 82.8 bits (203), Expect = 7.2e-17
Identity = 37/53 (69.81%), Postives = 42/53 (79.25%), Query Frame = 1


Query: 1   MAKPTYGDDGELLDGGFDMSTGGICGYMHNVIYITRFVQIMSILSEKFWYTTL 54
           MAKP+  D GELLDGGFDMST G+CGY+H+V+YIT FVQ+ SI+S KFWY  L
Sbjct: 68  MAKPSVSDAGELLDGGFDMSTPGMCGYLHDVLYITCFVQVGSIISGKFWYAYL 120

[Close]

BLAST of MELO3C010414 vs. NCBI nr
Match: gi|641834108|gb|KDO53110.1| (hypothetical protein CISIN_1g0306652mg, partial [Citrus sinensis])

HSP 1 Score: 103.2 bits (256), Expect = 1.5e-19
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1


Query: 1   MAKPTYGDDGELLDGGFDMSTGGICGYMHNVIYITRFVQIMSILSEKFWYTTL 54
           MAKPTY DDGEL+DGGFDMSTGGICGY+H+VIYIT FVQ+MSILSEKFWYT L
Sbjct: 68  MAKPTYTDDGELIDGGFDMSTGGICGYLHDVIYITSFVQVMSILSEKFWYTYL 120

[Close]

BLAST of MELO3C010414 vs. NCBI nr
Match: gi|568853684|ref|XP_006480476.1| (PREDICTED: transmembrane protein 208 homolog [Citrus sinensis])

HSP 1 Score: 103.2 bits (256), Expect = 1.5e-19
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1


Query: 1   MAKPTYGDDGELLDGGFDMSTGGICGYMHNVIYITRFVQIMSILSEKFWYTTL 54
           MAKPTY DDGEL+DGGFDMSTGGICGY+H+VIYIT FVQ+MSILSEKFWYT L
Sbjct: 68  MAKPTYTDDGELIDGGFDMSTGGICGYLHDVIYITSFVQVMSILSEKFWYTYL 120

[Close]

BLAST of MELO3C010414 vs. NCBI nr
Match: gi|641834109|gb|KDO53111.1| (hypothetical protein CISIN_1g0306652mg [Citrus sinensis])

HSP 1 Score: 103.2 bits (256), Expect = 1.5e-19
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1


Query: 1   MAKPTYGDDGELLDGGFDMSTGGICGYMHNVIYITRFVQIMSILSEKFWYTTL 54
           MAKPTY DDGEL+DGGFDMSTGGICGY+H+VIYIT FVQ+MSILSEKFWYT L
Sbjct: 68  MAKPTYTDDGELIDGGFDMSTGGICGYLHDVIYITSFVQVMSILSEKFWYTYL 120

[Close]

BLAST of MELO3C010414 vs. NCBI nr
Match: gi|567872155|ref|XP_006428667.1| (hypothetical protein CICLE_v100129242mg [Citrus clementina])

HSP 1 Score: 103.2 bits (256), Expect = 1.5e-19
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1


Query: 1   MAKPTYGDDGELLDGGFDMSTGGICGYMHNVIYITRFVQIMSILSEKFWYTTL 54
           MAKPTY DDGEL+DGGFDMSTGGICGY+H+VIYIT FVQ+MSILSEKFWYT L
Sbjct: 68  MAKPTYTDDGELIDGGFDMSTGGICGYLHDVIYITSFVQVMSILSEKFWYTYL 120

[Close]

BLAST of MELO3C010414 vs. NCBI nr
Match: gi|659069921|ref|XP_008452429.1| (PREDICTED: transmembrane protein 208 homolog [Cucumis melo])

HSP 1 Score: 103.2 bits (256), Expect = 1.5e-19
Identity = 48/53 (90.57%), Postives = 49/53 (92.45%), Query Frame = 1


Query: 1   MAKPTYGDDGELLDGGFDMSTGGICGYMHNVIYITRFVQIMSILSEKFWYTTL 54
           MAKPTYGDDGELLDGGFDMST GICGYMH+VIYIT FVQIMSILS KFWYT L
Sbjct: 68  MAKPTYGDDGELLDGGFDMSTDGICGYMHDVIYITSFVQIMSILSGKFWYTYL 120

The following BLAST results are available for this feature:

BLAST of MELO3C010414 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TM208_DANRE	4.9e-07	47.27	Transmembrane protein 208 OS=Danio rerio GN=tmem208 PE=2 SV=1	[more]

BLAST of MELO3C010414 vs. TrEMBL


Match Name	E-value	Identity	Description
V4SSH1_9ROSI	1.0e-19	86.79	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100129242mg PE...	[more]
A0A067EGT6_CITSI	1.0e-19	86.79	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0306652mg PE=4 ...	[more]
A0A067EQC8_CITSI	1.0e-19	86.79	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0306652mg PE=4 SV=1	[more]
V4SML5_9ROSI	1.0e-19	86.79	Uncharacterized protein OS=Citrus clementina GN=CICLE_v100129242mg PE=4 SV=1	[more]
A0A067EDE0_CITSI	1.0e-19	86.79	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0306652mg PE=4 SV=1	[more]

BLAST of MELO3C010414 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G23940.1	7.7e-19	73.58	Protein of unknown function (DUF788)	[more]
AT4G30500.1	7.2e-17	69.81	Protein of unknown function (DUF788)	[more]

BLAST of MELO3C010414 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|641834108\|gb\|KDO53110.1\|	1.5e-19	86.79	hypothetical protein CISIN_1g0306652mg, partial [Citrus sinensis]	[more]
gi\|568853684\|ref\|XP_006480476.1\|	1.5e-19	86.79	PREDICTED: transmembrane protein 208 homolog [Citrus sinensis]	[more]
gi\|641834109\|gb\|KDO53111.1\|	1.5e-19	86.79	hypothetical protein CISIN_1g0306652mg [Citrus sinensis]	[more]
gi\|567872155\|ref\|XP_006428667.1\|	1.5e-19	86.79	hypothetical protein CICLE_v100129242mg [Citrus clementina]	[more]
gi\|659069921\|ref\|XP_008452429.1\|	1.5e-19	90.57	PREDICTED: transmembrane protein 208 homolog [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008506	SND2/TMEM208

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C010414T1	MELO3C010414T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008506	Protein of unknown function DUF788, TMEM208	PANTHER	PTHR13505	FAMILY NOT NAMED	coord: 1..53 score: 2.5
IPR008506	Protein of unknown function DUF788, TMEM208	PFAM	PF05620	DUF788	coord: 1..53 score: 4.9
None	No IPR available	PANTHER	PTHR13505:SF7	TRANSMEMBRANE PROTEIN 208	coord: 1..53 score: 2.5

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C010414	Cucurbita maxima (Rimu)	cmameB246
MELO3C010414	Cucurbita moschata (Rifu)	cmomeB234
MELO3C010414	Wild cucumber (PI 183967)	cpimeB292
MELO3C010414	Cucumber (Chinese Long) v2	cumeB298
MELO3C010414	Watermelon (Charleston Gray)	mewcgB491
MELO3C010414	Watermelon (97103) v1	mewmB520
MELO3C010414	Cucurbita pepo (Zucchini)	cpemeB590
MELO3C010414	Cucumber (Gy14) v2	cgybmeB253
MELO3C010414	Silver-seed gourd	carmeB0333
MELO3C010414	Cucumber (Chinese Long) v3	cucmeB298
MELO3C010414	Wax gourd	mewgoB593
MELO3C010414	Cucumber (Gy14) v1	cgymeB461