Bhi04G000106 (gene) Wax gourd

Overview
NameBhi04G000106
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionDNA-directed RNA polymerase subunit
Locationchr4 : 3194569 .. 3199442 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCATTGTGATTTCAGACCCCTCACCTTTATTGCCGGCTCGTCACTCGCCGCCTCCGCCGCTCGCTGCAACTGGTTACTGGAACTCGACCCGAAAAGTCATCTCTAGGTAATATAGTAAACCATCTTCGTCGTTTCTCTTCCATCGATGTCGACTGAACTTGGTTGCGATAATTTTGAACGTAATCGGAAATCTGATTCGGACTTTTAGCTTCCGTCCGGTTCGATGAGTACCCACACATTCGAGCGGTCGGTTCGGTCCAGAATTTTTCTGTGCGAACCGAACCGAACCAATTTACAGTGTAGCTCCCGAAGGGTTGATGCTTCCAAAACCAAAAACTCTGGACAAAACCATCTTGTTTTCATTGGTTTGCTCTAAGGTCGATTATTGATCCATATCTCCGCCCACCTCAGCTGTCTTCGGCCAACTTTTCGACGAGAAATCTATCAAATCTCTTTCTGGGGCTTCATCAATTTTATTAGCAGGAATCTTGAATAGGGGTATATGATAAGTGGGCTAGTTTGAGCCTATCAAATCGATTAAATTGAGCTTACTACTTGTTATTTATGAGGAGGCCCCATGAGGTTCTGACTCAATTTTTTTTGGGTTTCTGAATGACCCAGCTTAGTTATTGTTTTGAGACATTATGTTCGTTTAAGTCTATTGTGGGTATGAATTCCCTCATGCTTTTCCATTGCTGTTTTAGTTTATTGACTGGTTCTAGATGAAGCGCCGATTTCTCCCATAACTTTGTTAATTGCCTCCGATTATCTTTTCCTCGCTTCTTCTACGGCCTATTATCTTTGGGAACTCTGTTTATCAAATCCCCTTTTTGCTATTACAATTCGACCACCCTTTTTGGGTTCAACTTTCCTGTCTTTTAGAGTGTTAGCATTTTGTTAGTCTCTTATTTTTTGTAATTGAAGTTCTCATAGCTATTCTAACTTTTATCCCTTTATTATTATTATTATTATTTTATTTTTATTTTTTTCCCCTTTTAATGAACGTTGTTAGTTAGAAAGCTCTTGGGGTAGCAGCAAGGGCCACTCATGGCTTATTCTCGTGGACATGACTTCCTGTTTTGCAATTTGTGTGGAACCATGTTGTCGTTCAGCTCAACGAAATATGTTCAGTGTCCTTTGTGCAAATCTCAGCGAAGTGCAAAAGGTGGGCATGCACATTGGATTTAATCTTATTGCATTGTAGTTATTTACTTTTAGTTTTTCATTTTGGATAATTTAGACATTCCAACATACATTACTCATATGAATGAGTGCTTAATCGGGTTTGCCTTGCAATAATTAAACTCTTTTTATCTTATTACATTTTAGTGTAGTTCATTTTTCCTTCATGTTTATCTGAGTCAAATGTGAAAAGCATTGTCTATTTTTCCATTTCCTATCTCGAGTTTCTATTTTTCTTTTTAATCTTTTTACTAGAACAAACTGTATCTGGGTTGTGCTGGTTTATTTTTCTTAATCTATCAGCTTAATTTAAAAAAATTCCTCTTATAGATGGGAGAGTAAGAGTTCTATTAGGGAATTTGCACGTTGCACCATCTTCTGCTTTGAGCTTTTGACTTTGAAAGCATGGTTTCTTACCCAAAAACAGTGTTCAGCATGAGTAGTTAGTTCATAGGCTTTATATTTGATGATGGTTACCGCTGCTTGCTTTTGCATTTTGGTTTCGATCAAAGCATAAATAAGTTGACTATTATTATTTTGATGAACAACTAGCTTTCATTAGGATAAATGATTATTATTTAATTTTTTTTTTTTTTTTTAAAAAGAAAGGAAAAAAACCAATCTCAATAGGACACAAAGAACCTTCCACTCAGATTAAGTAGTTGAAGCCATCTGCGGATAAGGGGAAAAAAGGGAGAAAGATGATCCCTTGATGTAGCCAAACCTTTCATCTAGCTTTTCTATTCAGGAAAGAACCAAGAAGTCCACAGACGAGAGTCATCCTTTAACTCATACTATCCTCCTCTACCCAACTCATTAGCTGTAAGGATTGAGTCTATAATTTGGAAATGTCCAGCAAAAGCCAGGGGAAATTTTGAGACGATTCTAGAGAGGATAGTTTTGAACCTATTTACAAACATTTATCAAGAATTTCCCGTATCCATTACAAAAAAAAAAAAAATTTTTTTTTGTAAGGACCCATAGTTAGGGAGGCTTACGGGTCTATTGTGTTTCACTTCCTTGCCGTCATCCTCCATAGCCATGAAGGCAATATAAGTCTTGGTTATATTCACACAAAAAATTCTTTTCTTAAAGAAGCCAAGATGTTGACATGGTATCATGCTTGAAAGTATCCCAAGTTTTTGTGAAGAATTCTAAGGAAAACCCAATACAGGAGTAGAACTAGTCCAAGACTAGAAATAGCCCATGGAACTTTATGCTATATAAAAGCCTACAGGAGAAGAGCACCGGCTGTAGAGATAGAAATCCAACACAGACCACGGAAGATTATGTGGTCCTACACTCCTATCAGCTTAGTACAGTAGAATGCTGGGATTCTGACAATTGGAGCCTTAAGTTTAGACGGCAACTGACTGATGTAGGTGAATGCATAAGGCTGAGTCACTTATTAATTTGAAAGCTTGTATTTCAAACTATCAAGATAGACCTTGGAAACTTTGATTTGACTTCTTCTGAAACCTATTTTCTTACTATGAATGAGTTTCTTAATTTCTCCAAAAAAATTGCTATAGGGACAAAGAGATACCTTGAGAGGTTAAAATTCTTTGTTTGGGACGTTGATCTTGGTATGGAATCTCTATTCCCAACAATTTTTCAGATGCCCTCCCTCTCTGTCTCACAGTTTTTTAACTAGTTAGTTAGCTTCCTTTTGCAAATAAGAACTAACTCAACCTGTTTTGCCAGTATAACTACCCGAGGAAAAACTTCTAACTACAGAAATTAGCATACATACTGCTCAATTATGACTTCTACTCAACCCTTAACAAAGTATTGTCCTTCGTAGTATTGCGCCTAAGATGTGTGACATATTGGTGGTAGCTAGCATAAATCTCATCCATAAGAATATGTGCATGATAGGGTTCTCAACCCACCTCCCCCCCGCCCCCCTCTCTAAATAATAAATAAAAGCAAATATTTCCATATTACAATTACATGGTGAAAGGATCATCAATGAAAGGATTGTTTCTATTTCAAAAAAAATAAAAAATAAAAAAATACATGGTCAAAGACTTTAGTGGATGTGGAACCAAATTCTAACTGCTAACAGCTGAGCAAAGACTACAAAGATATCAAACTGATCAAAATTCTCAGGCTGGTTATACGTCTTATTCAAGGGCCCAAGGGCCGGCCTGATTTCCCTCAATGTTGTTCAATTCTACATCTTGAAATTGGTGTTCTGAAAGTGTATACCAAATTATTTTAGAATGTGATGCTTTGCTTTCTTGATTGGAGATATTGAAATGGAGCAAATGCAGTTGAGAAATTATTGTTTTAATATTTTATGCACTCTTTTATTTGATATCTCTAACTGTGGCTTATTTCAGAGATCATTGGTAGAGAAATAAGTTACACAGTTACTGCTGAGGTACGCCATTTGAATCATCAACATTATCCCCATGCTTTCTAGGTCCAAGACATAGTATCCTCCCTGCAACACGTAGCTTTTGAACTTTAGGGTACCTGATAATTTCTGCTACTTTTATGATGCTTGGTAGAAATGTTTTCTGGATGAATTTATCTGTGGATTATGGGAATGGATTAAACTAAGGAATCTGTATAATGTTCTCTTAGATCAAGGTTTAGGCAAATCAATAAACCAACCAGACCCTGAAAATTCTTATTGGGTTGAAAATCTCGAACCATGAAAAGTTTTAGTATAAGCAAAAGTTAATATGATCTAATCTTAACATGCCCCCTTTTATTTGATTGTCGTCAGACATCCAAAAGTTTTAATTTTGAAATCCTCTTGTGACAACTTGCAGGAAATTAGGAAGCAGTTGGGAATTTCATTAATTGATGAAGAGAAAATGCAGCTATCAAAGGTAGTAGGAGAAAAAGAAGTGAATGGTATAAGATTTTGCTTGAGATATTTAAGTATTCCACTAACATGAAGCCGTGTCATGTTTGACAGGAAAGGAGGAGATGTGAAAAATGTGGGAATGATGAAGCTTGGTTTGAGAGCAGACAGGTACACTTTACAAACTTTAAAATAAAACTTTAATTCCTGGGCCCTTTAGTTTAGGCTTTGCTTATTTCTTTTTCCCATTAAAAAGAGATAAGTTTGATTGTGGTTTTGAATAAAAATGCAGATGAGATCAGCTGATGAAGGGCAGACCACATTTTATACCTGTACCAAATGCCATCATCAGACCAGAGAGAATTGATCATCTTCCATATAAAATGTTTCAAGGATGTCACGGTGGTTCATTATATAGAAATATGCAATATCCTTGAATTATGGCTCCAATGCAATCCAAAAGCTTTAACATGCTGAATTATGTTAGACAGTAAAACTTGATCGGAATCTGTAAGTTAAAAAACTTCTCATTAATATATCATGAAGTAGCAAGCA

mRNA sequence

GCCATTGTGATTTCAGACCCCTCACCTTTATTGCCGGCTCGTCACTCGCCGCCTCCGCCGCTCGCTGCAACTGGTTACTGGAACTCGACCCGAAAAGTCATCTCTAGCTTCCGTCCGGTTCGATGAGTACCCACACATTCGAGCGGTCGGTTCGGTCCAGAATTTTTCTGTGCGAACCGAACCGAACCAATTTACAGTGTAGCTCCCGAAGGGTTGATGCTTCCAAAACCAAAAACTCTGGACAAAACCATCTTGTTTTCATTGGTTTGCTCTAAGGTCGATTATTGATCCATATCTCCGCCCACCTCAGCTGTCTTCGGCCAACTTTTCGACGAGAAATCTATCAAATCTCTTTCTGGGGCTTCATCAATTTTATTAGCAGGAATCTTGAATAGGGTTAGAAAGCTCTTGGGGTAGCAGCAAGGGCCACTCATGGCTTATTCTCGTGGACATGACTTCCTGTTTTGCAATTTGTGTGGAACCATGTTGTCGTTCAGCTCAACGAAATATGTTCAGTGTCCTTTGTGCAAATCTCAGCGAAGTGCAAAAGAGATCATTGGTAGAGAAATAAGTTACACAGTTACTGCTGAGGAAATTAGGAAGCAGTTGGGAATTTCATTAATTGATGAAGAGAAAATGCAGCTATCAAAGGAAAGGAGGAGATGTGAAAAATGTGGGAATGATGAAGCTTGGTTTGAGAGCAGACAGATGAGATCAGCTGATGAAGGGCAGACCACATTTTATACCTGTACCAAATGCCATCATCAGACCAGAGAGAATTGATCATCTTCCATATAAAATGTTTCAAGGATGTCACGGTGGTTCATTATATAGAAATATGCAATATCCTTGAATTATGGCTCCAATGCAATCCAAAAGCTTTAACATGCTGAATTATGTTAGACAGTAAAACTTGATCGGAATCTGTAAGTTAAAAAACTTCTCATTAATATATCATGAAGTAGCAAGCA

Coding sequence (CDS)

ATGGCTTATTCTCGTGGACATGACTTCCTGTTTTGCAATTTGTGTGGAACCATGTTGTCGTTCAGCTCAACGAAATATGTTCAGTGTCCTTTGTGCAAATCTCAGCGAAGTGCAAAAGAGATCATTGGTAGAGAAATAAGTTACACAGTTACTGCTGAGGAAATTAGGAAGCAGTTGGGAATTTCATTAATTGATGAAGAGAAAATGCAGCTATCAAAGGAAAGGAGGAGATGTGAAAAATGTGGGAATGATGAAGCTTGGTTTGAGAGCAGACAGATGAGATCAGCTGATGAAGGGCAGACCACATTTTATACCTGTACCAAATGCCATCATCAGACCAGAGAGAATTGA

Protein sequence

MAYSRGHDFLFCNLCGTMLSFSSTKYVQCPLCKSQRSAKEIIGREISYTVTAEEIRKQLGISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Homology
[Close]
BLAST of Bhi04G000106 vs. Swiss-Prot
Match: sp|Q1RMP0|RPA12_BOVIN (DNA-directed RNA polymerase I subunit RPA12 OS=Bos taurus OX=9913 GN=ZNRD1 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.0e-11
Identity = 37/110 (33.64%), Postives = 60/110 (54.55%), Query Frame = 0 

Query: 8   DFLFCNLCGTMLSFSSTK-YVQCPLCKSQRSAKEIIGREISYTVTAEEIRKQLGISLIDE 67
           D  FC  CG++L     +  V C  C    + ++  G+ +  +V   ++   + +S+ + 
Sbjct: 13  DLDFCPDCGSVLPLPGVQDAVACTRCGFSINVRDFEGKVVKTSVVFNKLGTAMPLSMEEG 72

Query: 68  EKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
            + Q     RRC +CG++   + +RQMRSADEGQT FYTCT C  Q +E+
Sbjct: 73  PEFQGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKED 122

[Close]
BLAST of Bhi04G000106 vs. Swiss-Prot
Match: sp|Q5TM50|RPA12_MACMU (DNA-directed RNA polymerase I subunit RPA12 OS=Macaca mulatta OX=9544 GN=ZNRD1 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.0e-11
Identity = 37/110 (33.64%), Postives = 61/110 (55.45%), Query Frame = 0 

Query: 8   DFLFCNLCGTMLSFSSTK-YVQCPLCKSQRSAKEIIGREISYTVTAEEIRKQLGISLIDE 67
           D  FC+ CG++L     +  V C  C    + ++  G+ +  +V   ++   + +S+ + 
Sbjct: 16  DLDFCSDCGSVLPLPGAQDTVTCTRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMSVEEG 75

Query: 68  EKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
            + Q     RRC +CG++   + +RQMRSADEGQT FYTCT C  Q +E+
Sbjct: 76  PECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKED 125

[Close]
BLAST of Bhi04G000106 vs. Swiss-Prot
Match: sp|Q9P1U0|RPA12_HUMAN (DNA-directed RNA polymerase I subunit RPA12 OS=Homo sapiens OX=9606 GN=ZNRD1 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-10
Identity = 37/110 (33.64%), Postives = 61/110 (55.45%), Query Frame = 0 

Query: 8   DFLFCNLCGTMLSFSSTK-YVQCPLCKSQRSAKEIIGREISYTVTAEEIRKQLGISLIDE 67
           D  FC+ CG++L     +  V C  C    + ++  G+ +  +V   ++   + +S+ + 
Sbjct: 16  DLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMSVEEG 75

Query: 68  EKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
            + Q     RRC +CG++   + +RQMRSADEGQT FYTCT C  Q +E+
Sbjct: 76  PECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKED 125

[Close]
BLAST of Bhi04G000106 vs. Swiss-Prot
Match: sp|Q1XHV8|RPA12_PANTR (DNA-directed RNA polymerase I subunit RPA12 OS=Pan troglodytes OX=9598 GN=ZNRD1 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-10
Identity = 37/110 (33.64%), Postives = 61/110 (55.45%), Query Frame = 0 

Query: 8   DFLFCNLCGTMLSFSSTK-YVQCPLCKSQRSAKEIIGREISYTVTAEEIRKQLGISLIDE 67
           D  FC+ CG++L     +  V C  C    + ++  G+ +  +V   ++   + +S+ + 
Sbjct: 16  DLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMSVEEG 75

Query: 68  EKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
            + Q     RRC +CG++   + +RQMRSADEGQT FYTCT C  Q +E+
Sbjct: 76  PECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKED 125

[Close]
BLAST of Bhi04G000106 vs. Swiss-Prot
Match: sp|O94703|RPA12_SCHPO (DNA-directed RNA polymerase I subunit RPA12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpa12 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.5e-10
Identity = 32/111 (28.83%), Postives = 60/111 (54.05%), Query Frame = 0 

Query: 10  LFCNLCGTMLSFSSTKYVQCPLCK----SQRSAKEIIGREISYTVTAEEIRKQLGISLID 69
           +FC+ CG +L  ++ ++  C  C+    S++ A  ++  + S +     ++ +  I  ++
Sbjct: 8   IFCSECGNLLESTTAQWTTCDQCQSVYPSEQFANLVVETKSSASAFPSALKLKHSIVQVE 67

Query: 70  EEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
            +K + +    +C KCGND   F + Q+RSADEG T FY C +C ++   N
Sbjct: 68  SQKEEAATIEEKCPKCGNDHMTFHTLQLRSADEGSTVFYECPRCAYKFSTN 118

[Close]
BLAST of Bhi04G000106 vs. TAIR10
Match: AT3G25940.1 (TFIIB zinc-binding protein)

HSP 1 Score: 132.5 bits (332), Expect = 1.7e-31
Identity = 66/118 (55.93%), Postives = 87/118 (73.73%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVQCPLCKSQRSAKEIIGREISYTVTAEEIRKQLG 60
           M  SR  +FLFCNLCGTML   STKY +CP CK+ R+AK+II +EI+YTV+AE+IR++LG
Sbjct: 1   MEKSRESEFLFCNLCGTMLVLKSTKYAECPHCKTTRNAKDIIDKEIAYTVSAEDIRRELG 60

Query: 61  ISLIDEE---KMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTRE 116
           ISL  E+   + +L K ++ CEKC + E  + +RQ RSADEGQTT+YTC  C H+  E
Sbjct: 61  ISLFGEKTQAEAELPKIKKACEKCQHPELVYTTRQTRSADEGQTTYYTCPNCAHRFTE 118

[Close]
BLAST of Bhi04G000106 vs. TAIR10
Match: AT1G20065.2 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 72.4 bits (176), Expect = 2.1e-13
Identity = 32/53 (60.38%), Postives = 39/53 (73.58%), Query Frame = 0 

Query: 1  MAYSRGHDFLFCNLCGTMLSFSSTKYVQCPLCKSQRSAKEIIGREISYTVTAE 54
          M  SR  D LFCNLCGTML   STKY +CPLC++ R+ KEII + ++YTVT E
Sbjct: 1  MEKSRESDILFCNLCGTMLVLKSTKYAECPLCETTRNGKEIIDKNLAYTVTTE 53

[Close]
BLAST of Bhi04G000106 vs. TAIR10
Match: AT4G07950.1 (DNA-directed RNA polymerase, subunit M, archaeal)

HSP 1 Score: 49.3 bits (116), Expect = 1.9e-06
Identity = 31/110 (28.18%), Postives = 56/110 (50.91%), Query Frame = 0 

Query: 11  FCNLCGTMLSF---SSTKYV--QCPLCKSQRSAKEIIGREISYTVTAEEIRKQLGISLID 70
           FC  CG +L +    S+++    CP   +     EI  +++        ++K +   +  
Sbjct: 3   FCPTCGNLLRYEGGGSSRFFCSTCPYVANIERRVEIKKKQLL-------VKKSIEPVVTK 62

Query: 71  EEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTRE 116
           ++    ++    C +CG+D+A+F+S Q+RSADE ++ FY C KC    RE
Sbjct: 63  DDIPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCEFTWRE 105

[Close]
BLAST of Bhi04G000106 vs. TAIR10
Match: AT1G01210.1 (DNA-directed RNA polymerase, subunit M, archaeal)

HSP 1 Score: 48.5 bits (114), Expect = 3.2e-06
Identity = 30/107 (28.04%), Postives = 50/107 (46.73%), Query Frame = 0 

Query: 11  FCNLCGTMLSF--SSTKYVQCPLCKSQRSAKEIIGREISYTVTAEEIRKQLGISLIDEEK 70
           FC  CG +L +         C  C         I R++        ++K +   +  ++ 
Sbjct: 3   FCPTCGNLLRYEGGGNSRFFCSTC----PYVAYIQRQVEIKKKQLLVKKSIEAVVTKDDI 62

Query: 71  MQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTRE 116
              ++    C +CG+D+A+F+S Q+RSADE ++ FY C KC    RE
Sbjct: 63  PTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCEFTWRE 105

[Close]
BLAST of Bhi04G000106 vs. TrEMBL
Match: tr|A0A0A0LKC4|A0A0A0LKC4_CUCSA (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_2G345940 PE=3 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.7e-57
Identity = 110/116 (94.83%), Postives = 114/116 (98.28%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVQCPLCKSQRSAKEIIGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNLCGTMLSF STKYV+CP CKS+RSAKEI+GREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDEEKMQL+KERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]
BLAST of Bhi04G000106 vs. TrEMBL
Match: tr|A0A1S3BBZ4|A0A1S3BBZ4_CUCME (DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103488399 PE=3 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 1.1e-56
Identity = 110/116 (94.83%), Postives = 113/116 (97.41%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVQCPLCKSQRSAKEIIGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNLCGTMLSF STKYV+CPLCKS+RSAKEI GREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPLCKSKRSAKEINGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLI EEKMQL+KERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIGEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]
BLAST of Bhi04G000106 vs. TrEMBL
Match: tr|B3FNK6|B3FNK6_CUCSA (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.0e-51
Identity = 103/116 (88.79%), Postives = 109/116 (93.97%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVQCPLCKSQRSAKEIIGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNL GTMLSF STKYV+CP CKS+RSAKEI+GREISYTVTAEEI+KQLG
Sbjct: 1   MAYSRGHDFLFCNLGGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIKKQLG 60

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDE  MQL+KERRRCEKCGNDEAWFESRQMRSADEGQTTFYTC+KC  QTREN
Sbjct: 61  ISLIDENNMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCSKCLPQTREN 116

[Close]
BLAST of Bhi04G000106 vs. TrEMBL
Match: tr|A0A1S2YYN8|A0A1S2YYN8_CICAR (DNA-directed RNA polymerase subunit OS=Cicer arietinum OX=3827 GN=LOC101496606 PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.6e-39
Identity = 79/116 (68.10%), Postives = 100/116 (86.21%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVQCPLCKSQRSAKEIIGREISYTVTAEEIRKQLG 60
           M+YSRG DFLFCNLCGTML+  ST+Y QCPLCK++++ K I G+EISYT++AE+IR++LG
Sbjct: 1   MSYSRGRDFLFCNLCGTMLAVPSTEYAQCPLCKTKQNIKHIKGKEISYTISAEDIRRELG 60

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           I LI+E+K+QLSK  + CEKCG+ EA F +RQMRSADEGQTTFYTCT+C HQ +EN
Sbjct: 61  IDLIEEQKVQLSKVNKTCEKCGHGEATFYTRQMRSADEGQTTFYTCTRCGHQFQEN 116

[Close]
BLAST of Bhi04G000106 vs. TrEMBL
Match: tr|A0A1S2Y9R1|A0A1S2Y9R1_CICAR (DNA-directed RNA polymerase subunit OS=Cicer arietinum OX=3827 GN=LOC101500974 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 5.9e-39
Identity = 77/116 (66.38%), Postives = 101/116 (87.07%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVQCPLCKSQRSAKEIIGREISYTVTAEEIRKQLG 60
           M+YSRG DFLFC+LCGTML+  ST+Y QCPLCK++++ ++I G+EISYT++AE+IR++LG
Sbjct: 1   MSYSRGRDFLFCHLCGTMLAVPSTEYAQCPLCKTRKNIRDIKGKEISYTISAEDIRRELG 60

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           I LI+E+K+QLSK  + CEKCG+ EA F +RQMRSADEGQTTFYTCT+C HQ +EN
Sbjct: 61  IDLIEEQKVQLSKVNKTCEKCGHGEATFYTRQMRSADEGQTTFYTCTRCGHQFQEN 116

[Close]
BLAST of Bhi04G000106 vs. NCBI nr
Match: XP_023546814.1 (DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 236.1 bits (601), Expect = 5.9e-59
Identity = 113/116 (97.41%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVQCPLCKSQRSAKEIIGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNLCGTMLSFSSTKYV+CPLCKS+RSAKEI+GREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]
BLAST of Bhi04G000106 vs. NCBI nr
Match: XP_022144336.1 (DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia] >XP_022144337.1 DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia])

HSP 1 Score: 235.0 bits (598), Expect = 1.3e-58
Identity = 113/116 (97.41%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVQCPLCKSQRSAKEIIGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNLCGTMLSFSSTKYV+CPLCKS+RSAKEIIGREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIIGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDEEK+QLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKVQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]
BLAST of Bhi04G000106 vs. NCBI nr
Match: XP_022997634.1 (DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita maxima] >XP_022997635.1 DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita maxima])

HSP 1 Score: 233.8 bits (595), Expect = 3.0e-58
Identity = 113/116 (97.41%), Postives = 115/116 (99.14%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVQCPLCKSQRSAKEIIGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNLCGTMLSFSSTKYV+CPLCKS+RSAK IIGREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKGIIGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]
BLAST of Bhi04G000106 vs. NCBI nr
Match: XP_022962626.1 (DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita moschata] >XP_022962627.1 DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita moschata])

HSP 1 Score: 233.4 bits (594), Expect = 3.9e-58
Identity = 112/116 (96.55%), Postives = 115/116 (99.14%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVQCPLCKSQRSAKEIIGREISYTVTAEEIRKQLG 60
           MAYS GHDFLFCNLCGTMLSFSSTKYV+CPLCKS+RSAKEI+GREISYTVTAEEIRKQLG
Sbjct: 1   MAYSGGHDFLFCNLCGTMLSFSSTKYVECPLCKSRRSAKEIVGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

[Close]
BLAST of Bhi04G000106 vs. NCBI nr
Match: XP_004143007.1 (PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Cucumis sativus] >XP_004143009.1 PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Cucumis sativus] >KGN62253.1 hypothetical protein Csa_2G345940 [Cucumis sativus])

HSP 1 Score: 230.7 bits (587), Expect = 2.5e-57
Identity = 110/116 (94.83%), Postives = 114/116 (98.28%), Query Frame = 0 

Query: 1   MAYSRGHDFLFCNLCGTMLSFSSTKYVQCPLCKSQRSAKEIIGREISYTVTAEEIRKQLG 60
           MAYSRGHDFLFCNLCGTMLSF STKYV+CP CKS+RSAKEI+GREISYTVTAEEIRKQLG
Sbjct: 1   MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLG 60

Query: 61  ISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 117
           ISLIDEEKMQL+KERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
Sbjct: 61  ISLIDEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN 116

The following BLAST results are available for this feature:
BLAST of Bhi04G000106 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q1RMP0|RPA12_BOVIN7.0e-1133.64DNA-directed RNA polymerase I subunit RPA12 OS=Bos taurus OX=9913 GN=ZNRD1 PE=2 ... [more]
sp|Q5TM50|RPA12_MACMU7.0e-1133.64DNA-directed RNA polymerase I subunit RPA12 OS=Macaca mulatta OX=9544 GN=ZNRD1 P... [more]
sp|Q9P1U0|RPA12_HUMAN1.2e-1033.64DNA-directed RNA polymerase I subunit RPA12 OS=Homo sapiens OX=9606 GN=ZNRD1 PE=... [more]
sp|Q1XHV8|RPA12_PANTR1.2e-1033.64DNA-directed RNA polymerase I subunit RPA12 OS=Pan troglodytes OX=9598 GN=ZNRD1 ... [more]
sp|O94703|RPA12_SCHPO4.5e-1028.83DNA-directed RNA polymerase I subunit RPA12 OS=Schizosaccharomyces pombe (strain... [more]
BLAST of Bhi04G000106 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G25940.11.7e-3155.93TFIIB zinc-binding protein[more]
AT1G20065.22.1e-1360.38FUNCTIONS IN: molecular_function unknown[more]
AT4G07950.11.9e-0628.18DNA-directed RNA polymerase, subunit M, archaeal[more]
AT1G01210.13.2e-0628.04DNA-directed RNA polymerase, subunit M, archaeal[more]
BLAST of Bhi04G000106 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LKC4|A0A0A0LKC4_CUCSA1.7e-5794.83DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_2G345940 P... [more]
tr|A0A1S3BBZ4|A0A1S3BBZ4_CUCME1.1e-5694.83DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103488399 PE=3... [more]
tr|B3FNK6|B3FNK6_CUCSA1.0e-5188.79DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 PE=2 SV=1[more]
tr|A0A1S2YYN8|A0A1S2YYN8_CICAR1.6e-3968.10DNA-directed RNA polymerase subunit OS=Cicer arietinum OX=3827 GN=LOC101496606 P... [more]
tr|A0A1S2Y9R1|A0A1S2Y9R1_CICAR5.9e-3966.38DNA-directed RNA polymerase subunit OS=Cicer arietinum OX=3827 GN=LOC101500974 P... [more]
BLAST of Bhi04G000106 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023546814.15.9e-5997.41DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita pepo subsp. pepo][more]
XP_022144336.11.3e-5897.41DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia] >XP_02214... [more]
XP_022997634.13.0e-5897.41DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita maxima] >XP_02299763... [more]
XP_022962626.13.9e-5896.55DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita moschata] >XP_022962... [more]
XP_004143007.12.5e-5794.83PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Cucumis sativus] >XP_004... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006379mRNA cleavage
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR034004Zn_ribbon_RPA12_C
IPR012164Rpa12/Rpb9/Rpc10/TFS
IPR001222Znf_TFIIS
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006379 mRNA cleavage
biological_process GO:0006363 termination of RNA polymerase I transcription
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005736 DNA-directed RNA polymerase I complex
cellular_component GO:0005730 nucleolus
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0001054 RNA polymerase I activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi04M000106Bhi04M000106mRNA


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 76..115
e-value: 3.7E-12
score: 56.4
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 77..112
e-value: 7.8E-16
score: 57.5
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 74..114
score: 12.826
NoneNo IPR availableGENE3DG3DSA:2.20.25.10coord: 62..116
e-value: 4.7E-18
score: 66.2
NoneNo IPR availablePANTHERPTHR11239:SF14DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA12coord: 5..116
NoneNo IPR availablePANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 5..116
NoneNo IPR availableSUPERFAMILYSSF57783Zinc beta-ribboncoord: 55..116
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPIRSFPIRSF005586RNApol_RpoMcoord: 9..116
e-value: 5.5E-27
score: 92.5
IPR034004Pol I subunit A12, C-terminal zinc ribbonCDDcd10507Zn-ribbon_RPA12coord: 76..116
e-value: 9.03217E-20
score: 76.0876