Carg01880-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TAACGTTCTTCATTCTCCTCTCCAATCGATATGGAATCTCACACGCAGAGGCTCTCTTGAACGAGGAGATGAGGCTCGAGGATTTTGCAATATGATTTGCATATTCCTGAGGGAACTGTGAAAAGTGACAGAAATTAAGATGAGCGGTTAGTAAACCCCCTATCACACACTGCATTTATTATTGCTTTGCCTTCCAAGTAAATTCATATATACATATAAATCATTACATAATGATTTAATTAATGAAATAGTTATAGAATTGATAATTAAATATGTTTGAAGTTCTGCTTTTTATGATAAACTGTTCTTCTGATGATCAGCCACACTGAAACTAAGACACGGCTCAGACTTTCATGGAAGTAGCCGTGGAGAATCTTGGACAATGATCGAAAGCCCGATCCAGCAATATTGCATGAGTGAAGAAGCCGATTGTAAAGCTCTTTCGTCAAGTGCACGATCATGATAGGACTCGAGAAAGAAGTCCCGACTAGTGCCAGCACACGCGGTAAGACGGGGGAGGGGGTCATTAATTATTATCATTATTATTATTTAATCTTTTAAAAGTTGTTCTAGACTCACCCACAGTCCTGAGACAAAACTTGCCAAAAGCTCCCTTTTTGCATCTTTTTTGTTTATAAAAAGCCCCCAAACACATGGAATCAATCCAATTCAAACCACTAAAGTTTTATTTATTAAAATCAATTCAATTCTCCATTCTTAGGTCTGTTCTTAAATTAATTTTATTTCCCACTTGCACTCATAAGTTCCCATATTTATATATATACCCCCTCCTTCCTCTAAACTTTCCAGATACACCCATCTCCTTCTTCCTCATAACTTGGAGCTCCATTTAAAGCTCAAACACAGAGAAAGATTGAGACCAAAAAATGGGCATTCTTGACTCTGTCTCAGATTTAATCTCTGATTTTGTGACCATTTCCAGACAAAGGAACAAAAAACCATTGCAGGTTCCCTCCATTTATCTCTTTTTCTTTCAAAATCATCCACTTTTACTCTCTGATTTATAATGTCTTAATCAGATTAAGCTTTAAACTCACTCTTTAATGGCGGGTTTTGTTTTTGATGAGTGTAGACAGTGGAGATCAAAGTCAAAATGGACTGCGACGGCTGCGAGCGCCGAGTAAGAAACGCCGTCTCCAAAATGAAAGGTCCGACAAACCCATTTTGATTTTGGAATCCGCCATTGAAGAAGAAAAGGAGAGAATAATAATTTCATGTTCTAAGATTAATTTGTGGAATACAGGCGTGAAGACGGTGGAAATAAACAGAAAACAGAGCAAAGTTACAGTGATGGGGTTCGTGGATGAGAACAGAGTGTTGAAGAAAGTTAGAAGAACGGGGAAAATGGCGGAGCTATGGCCATATGTGCCGTACAATGTGGTGGCGTATCCCTACGTGGCGCAGGCCTACGACAAAAGGGCGCCGGCGGGCTTCGTTAAAAACGCCGTTCAGGCAGTCCCAAGCCCTAATGCCGTCGACGAGAAGCTCACCACCATGTTTAGCGATGACAATCCTAACGGCTGCTTCGTTATGTAATTCGAACCATTATCCAACCTCTTTCTTTCTTTTTTTTTT TAACGTTCTTCATTCTCCTCTCCAATCGATATGGAATCTCACACGCAGAGGCTCTCTTGAACGAGGAGATGAGGCTCGAGGATTTTGCAATATGATTTGCATATTCCTGAGGGAACTGTGAAAAGTGACAGAAATTAAGATGAGCGCCACACTGAAACTAAGACACGGCTCAGACTTTCATGGAAGTAGCCGTGGAGAATCTTGGACAATGATCGAAAGCCCGATCCAGCAATATTGCATGAGTGAAGAAGCCGATTGTAAAGCTCTTTCGTCAAGTGCACGATCATGATAGGACTCGAGAAAGAAGTCCCGACTAGTGCCAGCACACGCGATACACCCATCTCCTTCTTCCTCATAACTTGGAGCTCCATTTAAAGCTCAAACACAGAGAAAGATTGAGACCAAAAAATGGGCATTCTTGACTCTGTCTCAGATTTAATCTCTGATTTTGTGACCATTTCCAGACAAAGGAACAAAAAACCATTGCAGACAGTGGAGATCAAAGTCAAAATGGACTGCGACGGCTGCGAGCGCCGAGTAAGAAACGCCGTCTCCAAAATGAAAGGCGTGAAGACGGTGGAAATAAACAGAAAACAGAGCAAAGTTACAGTGATGGGGTTCGTGGATGAGAACAGAGTGTTGAAGAAAGTTAGAAGAACGGGGAAAATGGCGGAGCTATGGCCATATGTGCCGTACAATGTGGTGGCGTATCCCTACGTGGCGCAGGCCTACGACAAAAGGGCGCCGGCGGGCTTCGTTAAAAACGCCGTTCAGGCAGTCCCAAGCCCTAATGCCGTCGACGAGAAGCTCACCACCATGTTTAGCGATGACAATCCTAACGGCTGCTTCGTTATGTAATTCGAACCATTATCCAACCTCTTTCTTTCTTTTTTTTTT ATGGGCATTCTTGACTCTGTCTCAGATTTAATCTCTGATTTTGTGACCATTTCCAGACAAAGGAACAAAAAACCATTGCAGACAGTGGAGATCAAAGTCAAAATGGACTGCGACGGCTGCGAGCGCCGAGTAAGAAACGCCGTCTCCAAAATGAAAGGCGTGAAGACGGTGGAAATAAACAGAAAACAGAGCAAAGTTACAGTGATGGGGTTCGTGGATGAGAACAGAGTGTTGAAGAAAGTTAGAAGAACGGGGAAAATGGCGGAGCTATGGCCATATGTGCCGTACAATGTGGTGGCGTATCCCTACGTGGCGCAGGCCTACGACAAAAGGGCGCCGGCGGGCTTCGTTAAAAACGCCGTTCAGGCAGTCCCAAGCCCTAATGCCGTCGACGAGAAGCTCACCACCATGTTTAGCGATGACAATCCTAACGGCTGCTTCGTTATGTAA MGILDSVSDLISDFVTISRQRNKKPLQTVEIKVKMDCDGCERRVRNAVSKMKGVKTVEINRKQSKVTVMGFVDENRVLKKVRRTGKMAELWPYVPYNVVAYPYVAQAYDKRAPAGFVKNAVQAVPSPNAVDEKLTTMFSDDNPNGCFVM
BLAST of Carg01880-RA vs. NCBI nr
Match: XP_022957455.1 (heavy metal-associated isoprenylated plant protein 20-like [Cucurbita moschata] >XP_022957456.1 heavy metal-associated isoprenylated plant protein 20-like [Cucurbita moschata]) HSP 1 Score: 296.2 bits (757), Expect = 6.2e-77 Identity = 148/149 (99.33%), Postives = 148/149 (99.33%), Query Frame = 0
BLAST of Carg01880-RA vs. NCBI nr
Match: XP_023552767.1 (heavy metal-associated isoprenylated plant protein 20-like [Cucurbita pepo subsp. pepo] >XP_023552774.1 heavy metal-associated isoprenylated plant protein 20-like [Cucurbita pepo subsp. pepo] >XP_023552783.1 heavy metal-associated isoprenylated plant protein 20-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 294.7 bits (753), Expect = 1.8e-76 Identity = 147/149 (98.66%), Postives = 148/149 (99.33%), Query Frame = 0
BLAST of Carg01880-RA vs. NCBI nr
Match: XP_022987593.1 (heavy metal-associated isoprenylated plant protein 20-like [Cucurbita maxima]) HSP 1 Score: 292.7 bits (748), Expect = 6.9e-76 Identity = 146/149 (97.99%), Postives = 147/149 (98.66%), Query Frame = 0
BLAST of Carg01880-RA vs. NCBI nr
Match: XP_016900217.1 (PREDICTED: LOW QUALITY PROTEIN: heavy metal-associated isoprenylated plant protein 20-like [Cucumis melo]) HSP 1 Score: 271.6 bits (693), Expect = 1.6e-69 Identity = 134/149 (89.93%), Postives = 139/149 (93.29%), Query Frame = 0
BLAST of Carg01880-RA vs. NCBI nr
Match: XP_011655816.1 (PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Cucumis sativus] >KGN52144.1 hypothetical protein Csa_5G611750 [Cucumis sativus]) HSP 1 Score: 271.2 bits (692), Expect = 2.1e-69 Identity = 133/149 (89.26%), Postives = 139/149 (93.29%), Query Frame = 0
BLAST of Carg01880-RA vs. TAIR10
Match: AT1G71050.1 (Heavy metal transport/detoxification superfamily protein ) HSP 1 Score: 186.4 bits (472), Expect = 1.3e-47 Identity = 91/152 (59.87%), Postives = 117/152 (76.97%), Query Frame = 0
BLAST of Carg01880-RA vs. TAIR10
Match: AT1G22990.1 (Heavy metal transport/detoxification superfamily protein ) HSP 1 Score: 181.4 bits (459), Expect = 4.1e-46 Identity = 88/152 (57.89%), Postives = 117/152 (76.97%), Query Frame = 0
BLAST of Carg01880-RA vs. TAIR10
Match: AT5G17450.1 (Heavy metal transport/detoxification superfamily protein ) HSP 1 Score: 172.6 bits (436), Expect = 1.9e-43 Identity = 83/150 (55.33%), Postives = 110/150 (73.33%), Query Frame = 0
BLAST of Carg01880-RA vs. TAIR10
Match: AT4G39700.1 (Heavy metal transport/detoxification superfamily protein ) HSP 1 Score: 167.2 bits (422), Expect = 7.9e-42 Identity = 81/154 (52.60%), Postives = 112/154 (72.73%), Query Frame = 0
BLAST of Carg01880-RA vs. TAIR10
Match: AT4G38580.1 (farnesylated protein 6) HSP 1 Score: 151.0 bits (380), Expect = 5.9e-37 Identity = 78/154 (50.65%), Postives = 107/154 (69.48%), Query Frame = 0
BLAST of Carg01880-RA vs. Swiss-Prot
Match: sp|Q9C9A3|HIP20_ARATH (Heavy metal-associated isoprenylated plant protein 20 OS=Arabidopsis thaliana OX=3702 GN=HIPP20 PE=1 SV=1) HSP 1 Score: 186.4 bits (472), Expect = 2.3e-46 Identity = 91/152 (59.87%), Postives = 117/152 (76.97%), Query Frame = 0
BLAST of Carg01880-RA vs. Swiss-Prot
Match: sp|Q93VP2|HIP22_ARATH (Heavy metal-associated isoprenylated plant protein 22 OS=Arabidopsis thaliana OX=3702 GN=HIPP22 PE=1 SV=1) HSP 1 Score: 181.4 bits (459), Expect = 7.3e-45 Identity = 88/152 (57.89%), Postives = 117/152 (76.97%), Query Frame = 0
BLAST of Carg01880-RA vs. Swiss-Prot
Match: sp|Q9LF57|HIP21_ARATH (Heavy metal-associated isoprenylated plant protein 21 OS=Arabidopsis thaliana OX=3702 GN=HIPP21 PE=1 SV=1) HSP 1 Score: 172.6 bits (436), Expect = 3.4e-42 Identity = 83/150 (55.33%), Postives = 110/150 (73.33%), Query Frame = 0
BLAST of Carg01880-RA vs. Swiss-Prot
Match: sp|O65657|HIP23_ARATH (Heavy metal-associated isoprenylated plant protein 23 OS=Arabidopsis thaliana OX=3702 GN=HIPP23 PE=1 SV=1) HSP 1 Score: 167.2 bits (422), Expect = 1.4e-40 Identity = 81/154 (52.60%), Postives = 112/154 (72.73%), Query Frame = 0
BLAST of Carg01880-RA vs. Swiss-Prot
Match: sp|Q9SZN7|HIP26_ARATH (Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana OX=3702 GN=HIPP26 PE=1 SV=1) HSP 1 Score: 151.0 bits (380), Expect = 1.1e-35 Identity = 78/154 (50.65%), Postives = 107/154 (69.48%), Query Frame = 0
BLAST of Carg01880-RA vs. TrEMBL
Match: tr|A0A1S4DW54|A0A1S4DW54_CUCME (LOW QUALITY PROTEIN: heavy metal-associated isoprenylated plant protein 20-like OS=Cucumis melo OX=3656 GN=LOC103489345 PE=4 SV=1) HSP 1 Score: 271.6 bits (693), Expect = 1.1e-69 Identity = 134/149 (89.93%), Postives = 139/149 (93.29%), Query Frame = 0
BLAST of Carg01880-RA vs. TrEMBL
Match: tr|A0A0A0KTB7|A0A0A0KTB7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G611750 PE=4 SV=1) HSP 1 Score: 271.2 bits (692), Expect = 1.4e-69 Identity = 133/149 (89.26%), Postives = 139/149 (93.29%), Query Frame = 0
BLAST of Carg01880-RA vs. TrEMBL
Match: tr|A0A2C9UFL0|A0A2C9UFL0_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G126400 PE=4 SV=1) HSP 1 Score: 233.8 bits (595), Expect = 2.5e-58 Identity = 110/150 (73.33%), Postives = 132/150 (88.00%), Query Frame = 0
BLAST of Carg01880-RA vs. TrEMBL
Match: tr|A0A1R3GR00|A0A1R3GR00_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_24047 PE=4 SV=1) HSP 1 Score: 229.6 bits (584), Expect = 4.7e-57 Identity = 109/150 (72.67%), Postives = 130/150 (86.67%), Query Frame = 0
BLAST of Carg01880-RA vs. TrEMBL
Match: tr|A0A067L0K9|A0A067L0K9_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04678 PE=4 SV=1) HSP 1 Score: 228.8 bits (582), Expect = 8.1e-57 Identity = 107/150 (71.33%), Postives = 134/150 (89.33%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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