Carg26298-RA (mRNA) Silver-seed gourd

Overview
NameCarg26298-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionChromatin modification-related protein EAF3
LocationCucurbita_argyrosperma_scaffold_399 : 12204 .. 14612 (+)
Sequence length765
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTTACTTTACTACTTGGACTATAGATCTTTTATTTCCTCATTTATTTTATGGAACAGTTGGGATGAGTGGGTAGGACTTGATCGATTACTGAAGTTTACCGAAGAGAATGTGCAGAAACAGCTGGAACTCAATGAGAAGCGAGGGACTGACAAAAAGGCAGCTCGAGCATCCCAGATTAAACCCAAGAATGGTAATTGTTGGTTTGTTTAATTAATAACATATGCATTGCTGCGTATTATTTAAACTTAAGTGTAGGTTAGCCTTCAATTTAGGATATTGGAACTAAAAACAGTGCACCGATAGAGATGGAAATGGAAATTTTGGAAATTTATTCAACCTCTCCAATTATCCTGGGTGGCTGGCTCTTCATCTCAGCAGAACACAAATGCTTTATGTAGTGTATTATATATGGTTAGAAGGTAACAAAGCCTGGTCATGTAATGTATCTGGTTAGAAGGGAACAAAGCCTGGTCACTTGGATTTTTAAATAAAAAGAACTGTGGGAAGTTTCTCTGCTCTTTATAGTGTCCCCTACTCTAGTGACGTCTCTAATCGTATTTTTGCTGTTAATTTTTTTCTAAATCAATAGAAGGTTTGTTTCTCATACAGAGAGGAAGGGAGAGAGAGAACATCAGAACTTGTAAAAGAATTTGCAGATAGAAATAGTAAAATTATTAATTTAAACATGGAGTGCTAGTTTATGCATGCCAAGATTATTGACCCAAAATAAATGTTGTTAAGTTGGGAGTGTTCTGGAAGATGACAACCTAATGTCTGATGATATCTTGGCATTTATATTGCGTGGTTAGTTCAAGGTATTTGTCCAACAAAGATGAAGCAATAACTATGATGATTGTGATGTGACTGGAAAGGACATTTGCACTTTAAGGGTTTAGCATTTAGGATCTTAACTGGAAAAGGACCATTTCTAGGTTCAATCTATAAATCCTAATATTAGGGCTATTCTAGACTTCTAGTTCTGTATCTTTAACTGTAGAGTGTTCATGGATATACTATAGTTAGTTGTGTCCAGGTTCCTTGCATTAAGAGAATGTGAGAACTTTAGAATTTAGATAAAAGAATTGTCTGATCTTGTCGCTCTTATAACCATTTCTATATTCTACAAGCATCAGCAAAAATCCCGACAAATTGAACGGTACAATATTGGAGCGTAGGCGATTCTTATATTTTTCAGTTTATTTGAGAAACGTCTGCCAACTAGTCTGAAGATTGACATGAAGCATTATGTTTCCCGAGAAATAATTAATCTTGTTCTTGGTTTAATCTGTTCAAGCAATTATATATCTATGTGCAGTGGTAAAAGGGAGGAAGCGAAAGAATGATGCTAGTAAGGTATGCCTAAGTTAAATGTTGCTAGTGGCCCTTTAAAGTTACTGAGCGCACTCTCCTTTCCCCTCTTCCCCCACCCTTGAATTATTTCTTTCATGCTTTTTATTTCATCAGCCTTTTGCTGGTTATTGTTTCTTGTAAAAAGAACTTAGCATCTCGTTTGTTTACTGGTAGGAAAAGAATGCCGTGAACGTTGAAAAGCTTGTGAGCATACAGATTCCACTTAAACTAAAGAAGCAACTAGTTGATGACAGTGAGTTTGTAACGCATCTTGGGAAGGTAGTGATATCTGCCTTGCTTTTGTCATGACCATTATTACTTTCACAGAATCTAATGATCTTGTAATTTGGGGTTGTTAATTATATTTTGCTGTGCAGTTGGTAAAGCTCCCTCGTACGCCTAATGTAGAAGATATCATGAAGAAATATCTTGAATACAGGCTGAAGAAGGATGGAACGTAAGTATGTTGTTCGTTACACCACGTTCTTCATCGTCTTAATAATGCTATATGATAACAGGAAAGATGAATCCGTTGGAGAAATAGTGAAGGGGCTGATTTGTTACTTTGATAAAGCACTACCCGCAATGCTTCTATACAAAAGCGAGCGCCAACAATATGAAGAGTTGATTGTTCATGATGTCTCCCCTTCTTCCATATATGGCGCCGAACACCTTCTACGTCTATTCGGTAATACTGATTACCCTGGTTCTTATTTGCATACACTAGTGTGCAATATATGTGTGGTTAATGGTCATAATTGAAGATGCTATGCGGGCGTTTTCTAAATCGCAGTTAGGTTGCCTGAGTTGTTGTCTCAAGCCAATATTGAAGAGGAGACTTTGACGGAACTGCAGCAGAAGTTAGTTGACTTGCTCAAGTATTTATTCCTCTCCTCACTACTGTGTGCTTTGAGACATTATTGTGGGTTTCTGTCTTGTTTTGATGCGTATGTTTGTTGCAGGTTTTTAAGGAAGAATCAGAACACATTTTTCTTGTCATCGTACCATGTGCCTGAGAATATGGAAACAAGCACCAACAATGCCGATGACTAA

mRNA sequence

ATGCATTTACTTTACTACTTGGACTATAGATCTTTTATTTCCTCATTTATTTTATGGAACAGTTGGGATGAGTGGGTAGGACTTGATCGATTACTGAAGTTTACCGAAGAGAATGTGCAGAAACAGCTGGAACTCAATGAGAAGCGAGGGACTGACAAAAAGGCAGCTCGAGCATCCCAGATTAAACCCAAGAATGTGGTAAAAGGGAGGAAGCGAAAGAATGATGCTAGTAAGGAAAAGAATGCCGTGAACGTTGAAAAGCTTGTGAGCATACAGATTCCACTTAAACTAAAGAAGCAACTAGTTGATGACAGTGAGTTTGTAACGCATCTTGGGAAGTTGGTAAAGCTCCCTCGTACGCCTAATGTAGAAGATATCATGAAGAAATATCTTGAATACAGGCTGAAGAAGGATGGAACGAAAGATGAATCCGTTGGAGAAATAGTGAAGGGGCTGATTTGTTACTTTGATAAAGCACTACCCGCAATGCTTCTATACAAAAGCGAGCGCCAACAATATGAAGAGTTGATTGTTCATGATGTCTCCCCTTCTTCCATATATGGCGCCGAACACCTTCTACGTCTATTCGTTAGGTTGCCTGAGTTGTTGTCTCAAGCCAATATTGAAGAGGAGACTTTGACGGAACTGCAGCAGAAGTTAGTTGACTTGCTCAAGTTTTTAAGGAAGAATCAGAACACATTTTTCTTGTCATCGTACCATGTGCCTGAGAATATGGAAACAAGCACCAACAATGCCGATGACTAA

Coding sequence (CDS)

ATGCATTTACTTTACTACTTGGACTATAGATCTTTTATTTCCTCATTTATTTTATGGAACAGTTGGGATGAGTGGGTAGGACTTGATCGATTACTGAAGTTTACCGAAGAGAATGTGCAGAAACAGCTGGAACTCAATGAGAAGCGAGGGACTGACAAAAAGGCAGCTCGAGCATCCCAGATTAAACCCAAGAATGTGGTAAAAGGGAGGAAGCGAAAGAATGATGCTAGTAAGGAAAAGAATGCCGTGAACGTTGAAAAGCTTGTGAGCATACAGATTCCACTTAAACTAAAGAAGCAACTAGTTGATGACAGTGAGTTTGTAACGCATCTTGGGAAGTTGGTAAAGCTCCCTCGTACGCCTAATGTAGAAGATATCATGAAGAAATATCTTGAATACAGGCTGAAGAAGGATGGAACGAAAGATGAATCCGTTGGAGAAATAGTGAAGGGGCTGATTTGTTACTTTGATAAAGCACTACCCGCAATGCTTCTATACAAAAGCGAGCGCCAACAATATGAAGAGTTGATTGTTCATGATGTCTCCCCTTCTTCCATATATGGCGCCGAACACCTTCTACGTCTATTCGTTAGGTTGCCTGAGTTGTTGTCTCAAGCCAATATTGAAGAGGAGACTTTGACGGAACTGCAGCAGAAGTTAGTTGACTTGCTCAAGTTTTTAAGGAAGAATCAGAACACATTTTTCTTGTCATCGTACCATGTGCCTGAGAATATGGAAACAAGCACCAACAATGCCGATGACTAA

Protein sequence

MHLLYYLDYRSFISSFILWNSWDEWVGLDRLLKFTEENVQKQLELNEKRGTDKKAARASQIKPKNVVKGRKRKNDASKEKNAVNVEKLVSIQIPLKLKKQLVDDSEFVTHLGKLVKLPRTPNVEDIMKKYLEYRLKKDGTKDESVGEIVKGLICYFDKALPAMLLYKSERQQYEELIVHDVSPSSIYGAEHLLRLFVRLPELLSQANIEEETLTELQQKLVDLLKFLRKNQNTFFLSSYHVPENMETSTNNADD
Homology
[Close]
BLAST of Carg26298-RA vs. NCBI nr
Match: XP_022936816.1 (protein MRG1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 450.3 bits (1157), Expect = 4.4e-123
Identity = 234/247 (94.74%), Postives = 239/247 (96.76%), Query Frame = 0 

Query: 8   DYRSFISSFILWNSWDEWVGLDRLLKFTEENVQKQLELNEKRGTDKKAARASQIKPKNVV 67
           ++R ++       +WDEWVGLDRLLKFTEENVQKQLELNEKRGTDKKAARASQIKPKNVV
Sbjct: 85  EWRCYVHYLGWSKTWDEWVGLDRLLKFTEENVQKQLELNEKRGTDKKAARASQIKPKNVV 144

Query: 68  KGRKRKNDASKEKNAVNVEKLVSIQIPLKLKKQLVDDSEFVTHLGKLVKLPRTPNVEDIM 127
           KGRKRKNDASKEKNAVNVEKLVSIQIPLKLKKQLVDDSEFVTHLGKLVKLPRTPNVEDIM
Sbjct: 145 KGRKRKNDASKEKNAVNVEKLVSIQIPLKLKKQLVDDSEFVTHLGKLVKLPRTPNVEDIM 204

Query: 128 KKYLEYRLKKDGTKDESVGEIVKGLICYFDKALPAMLLYKSERQQYEELIVHDVSPSSIY 187
           KKYLEYRLKKDGTKDESVGEIVKGLICYFDKALPAMLLYKSERQQYEELIVHDVSPSSIY
Sbjct: 205 KKYLEYRLKKDGTKDESVGEIVKGLICYFDKALPAMLLYKSERQQYEELIVHDVSPSSIY 264

Query: 188 GAEHLLRLFVRLPELLSQANIEEETLTELQQKLVDLLKFLRKNQNTFFLSSYHVPENMET 247
           GAEHLLRLFVRLPELLSQANIEEETLTELQQKLVDLLKFLRKNQNTFFLSSYHVPENMET
Sbjct: 265 GAEHLLRLFVRLPELLSQANIEEETLTELQQKLVDLLKFLRKNQNTFFLSSYHVPENMET 324

Query: 248 STNNADD 255
           STNNADD
Sbjct: 325 STNNADD 331

[Close]
BLAST of Carg26298-RA vs. NCBI nr
Match: XP_022936818.1 (protein MRG1-like isoform X4 [Cucurbita moschata])

HSP 1 Score: 450.3 bits (1157), Expect = 4.4e-123
Identity = 234/247 (94.74%), Postives = 239/247 (96.76%), Query Frame = 0 

Query: 8   DYRSFISSFILWNSWDEWVGLDRLLKFTEENVQKQLELNEKRGTDKKAARASQIKPKNVV 67
           ++R ++       +WDEWVGLDRLLKFTEENVQKQLELNEKRGTDKKAARASQIKPKNVV
Sbjct: 67  EWRCYVHYLGWSKTWDEWVGLDRLLKFTEENVQKQLELNEKRGTDKKAARASQIKPKNVV 126

Query: 68  KGRKRKNDASKEKNAVNVEKLVSIQIPLKLKKQLVDDSEFVTHLGKLVKLPRTPNVEDIM 127
           KGRKRKNDASKEKNAVNVEKLVSIQIPLKLKKQLVDDSEFVTHLGKLVKLPRTPNVEDIM
Sbjct: 127 KGRKRKNDASKEKNAVNVEKLVSIQIPLKLKKQLVDDSEFVTHLGKLVKLPRTPNVEDIM 186

Query: 128 KKYLEYRLKKDGTKDESVGEIVKGLICYFDKALPAMLLYKSERQQYEELIVHDVSPSSIY 187
           KKYLEYRLKKDGTKDESVGEIVKGLICYFDKALPAMLLYKSERQQYEELIVHDVSPSSIY
Sbjct: 187 KKYLEYRLKKDGTKDESVGEIVKGLICYFDKALPAMLLYKSERQQYEELIVHDVSPSSIY 246

Query: 188 GAEHLLRLFVRLPELLSQANIEEETLTELQQKLVDLLKFLRKNQNTFFLSSYHVPENMET 247
           GAEHLLRLFVRLPELLSQANIEEETLTELQQKLVDLLKFLRKNQNTFFLSSYHVPENMET
Sbjct: 247 GAEHLLRLFVRLPELLSQANIEEETLTELQQKLVDLLKFLRKNQNTFFLSSYHVPENMET 306

Query: 248 STNNADD 255
           STNNADD
Sbjct: 307 STNNADD 313

[Close]
BLAST of Carg26298-RA vs. NCBI nr
Match: XP_022936819.1 (protein MRG1-like isoform X5 [Cucurbita moschata])

HSP 1 Score: 450.3 bits (1157), Expect = 4.4e-123
Identity = 234/247 (94.74%), Postives = 239/247 (96.76%), Query Frame = 0 

Query: 8   DYRSFISSFILWNSWDEWVGLDRLLKFTEENVQKQLELNEKRGTDKKAARASQIKPKNVV 67
           ++R ++       +WDEWVGLDRLLKFTEENVQKQLELNEKRGTDKKAARASQIKPKNVV
Sbjct: 54  EWRCYVHYLGWSKTWDEWVGLDRLLKFTEENVQKQLELNEKRGTDKKAARASQIKPKNVV 113

Query: 68  KGRKRKNDASKEKNAVNVEKLVSIQIPLKLKKQLVDDSEFVTHLGKLVKLPRTPNVEDIM 127
           KGRKRKNDASKEKNAVNVEKLVSIQIPLKLKKQLVDDSEFVTHLGKLVKLPRTPNVEDIM
Sbjct: 114 KGRKRKNDASKEKNAVNVEKLVSIQIPLKLKKQLVDDSEFVTHLGKLVKLPRTPNVEDIM 173

Query: 128 KKYLEYRLKKDGTKDESVGEIVKGLICYFDKALPAMLLYKSERQQYEELIVHDVSPSSIY 187
           KKYLEYRLKKDGTKDESVGEIVKGLICYFDKALPAMLLYKSERQQYEELIVHDVSPSSIY
Sbjct: 174 KKYLEYRLKKDGTKDESVGEIVKGLICYFDKALPAMLLYKSERQQYEELIVHDVSPSSIY 233

Query: 188 GAEHLLRLFVRLPELLSQANIEEETLTELQQKLVDLLKFLRKNQNTFFLSSYHVPENMET 247
           GAEHLLRLFVRLPELLSQANIEEETLTELQQKLVDLLKFLRKNQNTFFLSSYHVPENMET
Sbjct: 234 GAEHLLRLFVRLPELLSQANIEEETLTELQQKLVDLLKFLRKNQNTFFLSSYHVPENMET 293

Query: 248 STNNADD 255
           STNNADD
Sbjct: 294 STNNADD 300

[Close]
BLAST of Carg26298-RA vs. NCBI nr
Match: XP_022977073.1 (protein MRG1-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 450.3 bits (1157), Expect = 4.4e-123
Identity = 234/247 (94.74%), Postives = 239/247 (96.76%), Query Frame = 0 

Query: 8   DYRSFISSFILWNSWDEWVGLDRLLKFTEENVQKQLELNEKRGTDKKAARASQIKPKNVV 67
           ++R ++       +WDEWVGLDRLLKFTEENVQKQLELNEKRGTDKKAARASQIKPKNVV
Sbjct: 55  EWRCYVHYLGWSKTWDEWVGLDRLLKFTEENVQKQLELNEKRGTDKKAARASQIKPKNVV 114

Query: 68  KGRKRKNDASKEKNAVNVEKLVSIQIPLKLKKQLVDDSEFVTHLGKLVKLPRTPNVEDIM 127
           KGRKRKNDASKEKNAVNVEKLVSIQIPLKLKKQLVDDSEFVTHLGKLVKLPRTPNVEDIM
Sbjct: 115 KGRKRKNDASKEKNAVNVEKLVSIQIPLKLKKQLVDDSEFVTHLGKLVKLPRTPNVEDIM 174

Query: 128 KKYLEYRLKKDGTKDESVGEIVKGLICYFDKALPAMLLYKSERQQYEELIVHDVSPSSIY 187
           KKYLEYRLKKDGTKDESVGEIVKGLICYFDKALPAMLLYKSERQQYEELIVHDVSPSSIY
Sbjct: 175 KKYLEYRLKKDGTKDESVGEIVKGLICYFDKALPAMLLYKSERQQYEELIVHDVSPSSIY 234

Query: 188 GAEHLLRLFVRLPELLSQANIEEETLTELQQKLVDLLKFLRKNQNTFFLSSYHVPENMET 247
           GAEHLLRLFVRLPELLSQANIEEETLTELQQKLVDLLKFLRKNQNTFFLSSYHVPENMET
Sbjct: 235 GAEHLLRLFVRLPELLSQANIEEETLTELQQKLVDLLKFLRKNQNTFFLSSYHVPENMET 294

Query: 248 STNNADD 255
           STNNADD
Sbjct: 295 STNNADD 301

[Close]
BLAST of Carg26298-RA vs. NCBI nr
Match: XP_022977071.1 (protein MRG1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 450.3 bits (1157), Expect = 4.4e-123
Identity = 234/247 (94.74%), Postives = 239/247 (96.76%), Query Frame = 0 

Query: 8   DYRSFISSFILWNSWDEWVGLDRLLKFTEENVQKQLELNEKRGTDKKAARASQIKPKNVV 67
           ++R ++       +WDEWVGLDRLLKFTEENVQKQLELNEKRGTDKKAARASQIKPKNVV
Sbjct: 68  EWRCYVHYLGWSKTWDEWVGLDRLLKFTEENVQKQLELNEKRGTDKKAARASQIKPKNVV 127

Query: 68  KGRKRKNDASKEKNAVNVEKLVSIQIPLKLKKQLVDDSEFVTHLGKLVKLPRTPNVEDIM 127
           KGRKRKNDASKEKNAVNVEKLVSIQIPLKLKKQLVDDSEFVTHLGKLVKLPRTPNVEDIM
Sbjct: 128 KGRKRKNDASKEKNAVNVEKLVSIQIPLKLKKQLVDDSEFVTHLGKLVKLPRTPNVEDIM 187

Query: 128 KKYLEYRLKKDGTKDESVGEIVKGLICYFDKALPAMLLYKSERQQYEELIVHDVSPSSIY 187
           KKYLEYRLKKDGTKDESVGEIVKGLICYFDKALPAMLLYKSERQQYEELIVHDVSPSSIY
Sbjct: 188 KKYLEYRLKKDGTKDESVGEIVKGLICYFDKALPAMLLYKSERQQYEELIVHDVSPSSIY 247

Query: 188 GAEHLLRLFVRLPELLSQANIEEETLTELQQKLVDLLKFLRKNQNTFFLSSYHVPENMET 247
           GAEHLLRLFVRLPELLSQANIEEETLTELQQKLVDLLKFLRKNQNTFFLSSYHVPENMET
Sbjct: 248 GAEHLLRLFVRLPELLSQANIEEETLTELQQKLVDLLKFLRKNQNTFFLSSYHVPENMET 307

Query: 248 STNNADD 255
           STNNADD
Sbjct: 308 STNNADD 314

[Close]
BLAST of Carg26298-RA vs. TAIR10
Match: AT4G37280.1 (MRG family protein)

HSP 1 Score: 246.9 bits (629), Expect = 1.3e-65
Identity = 132/256 (51.56%), Postives = 176/256 (68.75%), Query Frame = 0 

Query: 16  FILWN-SWDEWVGLDRLLKFTEENVQKQLELNEKRGTDK--KAARASQIK---------- 75
           ++ WN +WDEWV  DRLLK TEEN+ KQ  L++K+G +K  K+ R++Q K          
Sbjct: 64  YLGWNKNWDEWVSADRLLKHTEENLVKQKALDKKQGVEKGTKSGRSAQTKXXXXXXXXAD 123

Query: 76  ----PKNVVKGRKRKNDASKEKNAVNVEKLVSIQIPLKLKKQLVDDSEFVTHLGKLVKLP 135
                 N  KG+KRK+++  EK+ V  EKL+ IQIP  LKKQL DD E++    K+VKLP
Sbjct: 124 KDDTKTNAAKGKKRKHESGNEKDNVTAEKLMKIQIPASLKKQLTDDWEYIAQKDKVVKLP 183

Query: 136 RTPNVEDIMKKYLEYRLKKDGTKDESVGEIVKGLICYFDKALPAMLLYKSERQQYEELIV 195
           R+PNV++I+ KYLE++ KKDG   +SV EI+KG+  YFDKALP MLLYK ER+QY+E IV
Sbjct: 184 RSPNVDEILSKYLEFKTKKDGMVTDSVAEILKGIRSYFDKALPVMLLYKKERRQYQESIV 243

Query: 196 HDVSPSSIYGAEHLLRLFVRLPELLSQANIEEETLTELQQKLVDLLKFLRKNQNTFFLSS 255
            D SPS++YGAEHLLRLFV+LP+L S  N+EEET + +QQ L D LKF++KNQ+TF L S
Sbjct: 244 DDTSPSTVYGAEHLLRLFVKLPDLFSYVNMEEETWSRMQQTLSDFLKFIQKNQSTFLLPS 303

[Close]
BLAST of Carg26298-RA vs. TAIR10
Match: AT1G02740.1 (MRG family protein)

HSP 1 Score: 243.0 bits (619), Expect = 1.9e-64
Identity = 132/237 (55.70%), Postives = 174/237 (73.42%), Query Frame = 0 

Query: 16  FILWN-SWDEWVGLDRLLKFTEENVQKQLELNEKRGTDKKAA--RASQIKPK--NVVKGR 75
           +I WN SWDEW+ LD LLK ++EN++KQ E   K+   K A   + S++KP+  NV +GR
Sbjct: 87  YIGWNKSWDEWIRLDCLLKHSDENIEKQKEQGLKQQGIKSAMAWKVSKMKPRSPNVARGR 146

Query: 76  KRKNDA-SKEKNAVNVEKLVSIQIPLKLKKQLVDDSEFVTHLGKLVKLPRTPNVEDIMKK 135
           KRK D+   EKN +  + L+S  IP  L+KQL+DD EFVT + KLV+LPR+PNV+ I+KK
Sbjct: 147 KRKQDSVDTEKNVLPSDNLLSFNIPPALRKQLLDDFEFVTQMQKLVQLPRSPNVDGILKK 206

Query: 136 YLEYRLKKDGTKDESVGEIVKGLICYFDKALPAMLLYKSERQQYEELIVHDVSPSSIYGA 195
           Y++ ++KK G   +S+ EI+KGL CYFDKALP MLLY +ER+QYEE +   VSPS++YGA
Sbjct: 207 YIDSQMKKHGRVTDSLEEILKGLRCYFDKALPVMLLYNNERKQYEESVSGGVSPSTVYGA 266

Query: 196 EHLLRLFVRLPELLSQANIEEETLTELQQKLVDLLKFLRKNQNTFFLSSYHVPENME 247
           EHLLRLFV+LPELL   N+ EETL ELQ   VD+L+FLRKNQ+  F+S+Y   E ME
Sbjct: 267 EHLLRLFVKLPELLVHVNMAEETLKELQDNFVDILRFLRKNQSVLFVSTYKAVEEME 323

[Close]
BLAST of Carg26298-RA vs. Swiss-Prot
Match: sp|Q94C32|MRG1_ARATH (Protein MRG1 OS=Arabidopsis thaliana OX=3702 GN=MRG1 PE=1 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 2.4e-64
Identity = 132/256 (51.56%), Postives = 176/256 (68.75%), Query Frame = 0 

Query: 16  FILWN-SWDEWVGLDRLLKFTEENVQKQLELNEKRGTDK--KAARASQIK---------- 75
           ++ WN +WDEWV  DRLLK TEEN+ KQ  L++K+G +K  K+ R++Q K          
Sbjct: 64  YLGWNKNWDEWVSADRLLKHTEENLVKQKALDKKQGVEKGTKSGRSAQTKXXXXXXXXAD 123

Query: 76  ----PKNVVKGRKRKNDASKEKNAVNVEKLVSIQIPLKLKKQLVDDSEFVTHLGKLVKLP 135
                 N  KG+KRK+++  EK+ V  EKL+ IQIP  LKKQL DD E++    K+VKLP
Sbjct: 124 KDDTKTNAAKGKKRKHESGNEKDNVTAEKLMKIQIPASLKKQLTDDWEYIAQKDKVVKLP 183

Query: 136 RTPNVEDIMKKYLEYRLKKDGTKDESVGEIVKGLICYFDKALPAMLLYKSERQQYEELIV 195
           R+PNV++I+ KYLE++ KKDG   +SV EI+KG+  YFDKALP MLLYK ER+QY+E IV
Sbjct: 184 RSPNVDEILSKYLEFKTKKDGMVTDSVAEILKGIRSYFDKALPVMLLYKKERRQYQESIV 243

Query: 196 HDVSPSSIYGAEHLLRLFVRLPELLSQANIEEETLTELQQKLVDLLKFLRKNQNTFFLSS 255
            D SPS++YGAEHLLRLFV+LP+L S  N+EEET + +QQ L D LKF++KNQ+TF L S
Sbjct: 244 DDTSPSTVYGAEHLLRLFVKLPDLFSYVNMEEETWSRMQQTLSDFLKFIQKNQSTFLLPS 303

[Close]
BLAST of Carg26298-RA vs. Swiss-Prot
Match: sp|Q4V3E2|MRG2_ARATH (Protein MRG2 OS=Arabidopsis thaliana OX=3702 GN=MRG2 PE=1 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 3.5e-63
Identity = 132/237 (55.70%), Postives = 174/237 (73.42%), Query Frame = 0 

Query: 16  FILWN-SWDEWVGLDRLLKFTEENVQKQLELNEKRGTDKKAA--RASQIKPK--NVVKGR 75
           +I WN SWDEW+ LD LLK ++EN++KQ E   K+   K A   + S++KP+  NV +GR
Sbjct: 87  YIGWNKSWDEWIRLDCLLKHSDENIEKQKEQGLKQQGIKSAMAWKVSKMKPRSPNVARGR 146

Query: 76  KRKNDA-SKEKNAVNVEKLVSIQIPLKLKKQLVDDSEFVTHLGKLVKLPRTPNVEDIMKK 135
           KRK D+   EKN +  + L+S  IP  L+KQL+DD EFVT + KLV+LPR+PNV+ I+KK
Sbjct: 147 KRKQDSVDTEKNVLPSDNLLSFNIPPALRKQLLDDFEFVTQMQKLVQLPRSPNVDGILKK 206

Query: 136 YLEYRLKKDGTKDESVGEIVKGLICYFDKALPAMLLYKSERQQYEELIVHDVSPSSIYGA 195
           Y++ ++KK G   +S+ EI+KGL CYFDKALP MLLY +ER+QYEE +   VSPS++YGA
Sbjct: 207 YIDSQMKKHGRVTDSLEEILKGLRCYFDKALPVMLLYNNERKQYEESVSGGVSPSTVYGA 266

Query: 196 EHLLRLFVRLPELLSQANIEEETLTELQQKLVDLLKFLRKNQNTFFLSSYHVPENME 247
           EHLLRLFV+LPELL   N+ EETL ELQ   VD+L+FLRKNQ+  F+S+Y   E ME
Sbjct: 267 EHLLRLFVKLPELLVHVNMAEETLKELQDNFVDILRFLRKNQSVLFVSTYKAVEEME 323

[Close]
BLAST of Carg26298-RA vs. Swiss-Prot
Match: sp|Q6C9M9|EAF3_YARLI (Chromatin modification-related protein EAF3 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=EAF3 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.5e-29
Identity = 92/273 (33.70%), Postives = 148/273 (54.21%), Query Frame = 0 

Query: 3   LLYYLDYRSFISSFILWNSWDEWVGLDRLLKFTEENVQKQLELN------EKRGTD---- 62
           + YY+ Y+ +       N+WDEWVG +R+L   E+N++ Q EL        K+G D    
Sbjct: 104 ICYYVHYKGW------KNTWDEWVGEERVLALNEDNIKLQKELKAAALAAAKKGKDFDAL 163

Query: 63  ----------------KKAARASQIKPKNVVKGRKRK------NDASKEKNAVNVEKLVS 122
                           K+ + AS+  P    +  KR+       D  KE + +   K ++
Sbjct: 164 APPEALSETASPAPTTKRKSMASKDSPAEGPRPVKRRGGLAALEDLEKEDDYLK-RKEIA 223

Query: 123 IQIPLKLKKQLVDDSEFVTHLGKLVKLPRTPNVEDIMKKY---LEYRLKKDGTKDESVGE 182
           + +P KLK QLVDD EFVT   +LV LPR   V DI+K++    E + +      + + E
Sbjct: 224 LVVPDKLKAQLVDDWEFVTKDHQLVGLPRKVTVVDILKEFKKEAEAKYRPGSADADILNE 283

Query: 183 IVKGLICYFDKALPAMLLYKSERQQYEELIV----HDVSPSSIYGAEHLLRLFVRLPELL 237
           +V G+  YFD++L ++LLY+ ER+QY ++       + + S +YGAEHLLRLFV LP L+
Sbjct: 284 VVSGIKLYFDRSLGSILLYRFEREQYLQITQSPDHSNKTMSEVYGAEHLLRLFVSLPGLI 343

[Close]
BLAST of Carg26298-RA vs. Swiss-Prot
Match: sp|Q54RM0|EAF3_DICDI (NuA4 complex subunit EAF3 homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0283075 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.3e-29
Identity = 68/157 (43.31%), Postives = 103/157 (65.61%), Query Frame = 0 

Query: 87  KLVSIQIPLKLKKQLVDDSEFVTHLGKLVKLPRTPNVEDIMKKYLEYRLKKDGTKDESVG 146
           K + I+IPL LK +LVDD   + +   ++ LP++PNV+DI+ K +E     +  K     
Sbjct: 216 KFIDIEIPLSLKNKLVDDWNSINNEKSILSLPKSPNVKDILNKIIE-----ENDKSSECK 275

Query: 147 EIVKGLICYFDKALPAMLLYKSERQQYEELIVHD--VSPSSIYGAEHLLRLFVRLPELLS 206
           E++ G+  YF+KAL  +LLYK ER QY+ ++  +   S S IYGAEHLLRLFV+LP+LL 
Sbjct: 276 EVINGIKQYFNKALGTLLLYKFERPQYDSILKTNPKKSMSDIYGAEHLLRLFVKLPQLLV 335

Query: 207 QANIEEETLTELQQKLVDLLKFLRKNQNTFFLSSYHV 242
            +N+EE+T+T+L+     +L++L KN +T FL  Y +
Sbjct: 336 ISNLEEKTITQLKDAFEIVLEYLEKNSSTLFLKEYTI 367

[Close]
BLAST of Carg26298-RA vs. Swiss-Prot
Match: sp|Q5BBV4|EAF3_EMENI (Chromatin modification-related protein eaf3 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=eaf3 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 7.3e-29
Identity = 94/253 (37.15%), Postives = 136/253 (53.75%), Query Frame = 0 

Query: 20  NSWDEWVGLDRLLKFTEEN------VQKQLE-----------LNEKRGTDKKAARASQIK 79
           N+WD+WV  DRL KFTEEN      ++++ E           L +K G+D  +AR S+ +
Sbjct: 54  NTWDDWVPQDRLRKFTEENRELATTLRREAEAALRQKSTKTSLKKKGGSDHSSARGSEER 113

Query: 80  PKNVV---KGRKRKNDASKEKNAVNVEKLVSIQIPLKLKKQLVDDSEFVTHLGKLVKLPR 139
             +V      R R ND  KE++       V I +P  LK  LVDD E VT   ++V LP 
Sbjct: 114 QTSVPGRGTKRARDNDIEKEEH-FYTRPSVRIVMPDNLKSLLVDDWENVTKNQQVVALPA 173

Query: 140 TPNVEDIMKKYL-EYRLKKDGTKDESV-GEIVKGLICYFDKALPAMLLYKSERQQYE--- 199
             +V  I+  YL E R K+ G+ +  V  E+V G+  YFDK+L  +LLY+ ER+QY    
Sbjct: 174 KSSVNQILDDYLKEERPKRTGSSEVDVLEEVVMGIRDYFDKSLDKILLYRFEREQYRVLR 233

Query: 200 ---ELIVHDVSPSSIYGAEHLLRLFVRLPELLSQANIEEETLTELQQKLVDLLKFLRKNQ 245
              E    D  P  +YGAEHL RLF  +PEL++Q N++ ++   L+++L     +L KN 
Sbjct: 234 KRWESETADKGPLDVYGAEHLTRLFATMPELIAQTNMDLQSTNRLREELSKFTIWLSKNS 293

[Close]
BLAST of Carg26298-RA vs. TrEMBL
Match: tr|A0A1S3BU93|A0A1S3BU93_CUCME (protein MRG1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493579 PE=4 SV=1)

HSP 1 Score: 425.6 bits (1093), Expect = 7.7e-116
Identity = 219/247 (88.66%), Postives = 232/247 (93.93%), Query Frame = 0 

Query: 8   DYRSFISSFILWNSWDEWVGLDRLLKFTEENVQKQLELNEKRGTDKKAARASQIKPKNVV 67
           ++R ++       +WDEWVGLDRLLKFTEENVQKQ ELNEKRGTDKKA+RAS IKPKNVV
Sbjct: 67  EWRCYVHYLGWSKTWDEWVGLDRLLKFTEENVQKQQELNEKRGTDKKASRASHIKPKNVV 126

Query: 68  KGRKRKNDASKEKNAVNVEKLVSIQIPLKLKKQLVDDSEFVTHLGKLVKLPRTPNVEDIM 127
           KG+KRKNDASKEK A+NVEKLVSIQIP+KLKKQLVDDSEFVTHLGKLVKLPRTPNV+DIM
Sbjct: 127 KGKKRKNDASKEKGAMNVEKLVSIQIPVKLKKQLVDDSEFVTHLGKLVKLPRTPNVDDIM 186

Query: 128 KKYLEYRLKKDGTKDESVGEIVKGLICYFDKALPAMLLYKSERQQYEELIVHDVSPSSIY 187
           KKYLEYRLKKD TKDESVGEIVKGLICYFDKALP MLLYKSERQQYEEL+++DVSPSSIY
Sbjct: 187 KKYLEYRLKKDATKDESVGEIVKGLICYFDKALPVMLLYKSERQQYEELMINDVSPSSIY 246

Query: 188 GAEHLLRLFVRLPELLSQANIEEETLTELQQKLVDLLKFLRKNQNTFFLSSYHVPENMET 247
           GAEHLLRLFVRLPELLSQANIEEETL ELQQKLVDLLKFLRKNQN FFLSSYHVPENMET
Sbjct: 247 GAEHLLRLFVRLPELLSQANIEEETLMELQQKLVDLLKFLRKNQNAFFLSSYHVPENMET 306

Query: 248 STNNADD 255
           STNNADD
Sbjct: 307 STNNADD 313

[Close]
BLAST of Carg26298-RA vs. TrEMBL
Match: tr|A0A0A0L0E2|A0A0A0L0E2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641700 PE=4 SV=1)

HSP 1 Score: 425.2 bits (1092), Expect = 1.0e-115
Identity = 218/247 (88.26%), Postives = 232/247 (93.93%), Query Frame = 0 

Query: 8   DYRSFISSFILWNSWDEWVGLDRLLKFTEENVQKQLELNEKRGTDKKAARASQIKPKNVV 67
           ++R ++       +WDEWVGLDRLLKFTEENVQKQ ELNEKRGTDKKA+RAS IKPKNVV
Sbjct: 67  EWRCYVHYLGWSKTWDEWVGLDRLLKFTEENVQKQQELNEKRGTDKKASRASHIKPKNVV 126

Query: 68  KGRKRKNDASKEKNAVNVEKLVSIQIPLKLKKQLVDDSEFVTHLGKLVKLPRTPNVEDIM 127
           KG+KRKNDASKEK A+NVEKLVSIQIP+KLKKQLVDDSEFVTHLGKLVKLPRTPNV+DIM
Sbjct: 127 KGKKRKNDASKEKGAMNVEKLVSIQIPVKLKKQLVDDSEFVTHLGKLVKLPRTPNVDDIM 186

Query: 128 KKYLEYRLKKDGTKDESVGEIVKGLICYFDKALPAMLLYKSERQQYEELIVHDVSPSSIY 187
           KKYLEYRLKKD TKDES+GEIVKGLICYFDKALP MLLYKSERQQYEEL+++DVSPSSIY
Sbjct: 187 KKYLEYRLKKDATKDESIGEIVKGLICYFDKALPVMLLYKSERQQYEELMINDVSPSSIY 246

Query: 188 GAEHLLRLFVRLPELLSQANIEEETLTELQQKLVDLLKFLRKNQNTFFLSSYHVPENMET 247
           GAEHLLRLFVRLPELLSQANIEEETL ELQQKLVDLLKFLRKNQN FFLSSYHVPENMET
Sbjct: 247 GAEHLLRLFVRLPELLSQANIEEETLMELQQKLVDLLKFLRKNQNAFFLSSYHVPENMET 306

Query: 248 STNNADD 255
           STNNADD
Sbjct: 307 STNNADD 313

[Close]
BLAST of Carg26298-RA vs. TrEMBL
Match: tr|A0A1S3BU71|A0A1S3BU71_CUCME (protein MRG1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493579 PE=4 SV=1)

HSP 1 Score: 409.1 bits (1050), Expect = 7.4e-111
Identity = 213/247 (86.23%), Postives = 226/247 (91.50%), Query Frame = 0 

Query: 8   DYRSFISSFILWNSWDEWVGLDRLLKFTEENVQKQLELNEKRGTDKKAARASQIKPKNVV 67
           ++R ++       +WDEWVGLDRLLKFTEENVQKQ ELNEKRGTDKKA+RAS IKPKNVV
Sbjct: 67  EWRCYVHYLGWSKTWDEWVGLDRLLKFTEENVQKQQELNEKRGTDKKASRASHIKPKNVV 126

Query: 68  KGRKRKNDASKEKNAVNVEKLVSIQIPLKLKKQLVDDSEFVTHLGKLVKLPRTPNVEDIM 127
           KG+KRKNDASKEK A+NVEKLVSIQIP+KLKKQLVDDSEFVTHLGKLVKLPRTPNV+DIM
Sbjct: 127 KGKKRKNDASKEKGAMNVEKLVSIQIPVKLKKQLVDDSEFVTHLGKLVKLPRTPNVDDIM 186

Query: 128 KKYLEYRLKKDGTKDESVGEIVKGLICYFDKALPAMLLYKSERQQYEELIVHDVSPSSIY 187
           KKYLEYRLKKD TKDESVGEIVKGLICYFDKALP MLLYKSERQQYEEL+++DVSPSSIY
Sbjct: 187 KKYLEYRLKKDATKDESVGEIVKGLICYFDKALPVMLLYKSERQQYEELMINDVSPSSIY 246

Query: 188 GAEHLLRLFVRLPELLSQANIEEETLTELQQKLVDLLKFLRKNQNTFFLSSYHVPENMET 247
           GAEHLLRLFVRLPELLSQANIEEETL ELQQ      KFLRKNQN FFLSSYHVPENMET
Sbjct: 247 GAEHLLRLFVRLPELLSQANIEEETLMELQQ------KFLRKNQNAFFLSSYHVPENMET 306

Query: 248 STNNADD 255
           STNNADD
Sbjct: 307 STNNADD 307

[Close]
BLAST of Carg26298-RA vs. TrEMBL
Match: tr|A0A059BKD2|A0A059BKD2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F00003 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 2.9e-83
Identity = 169/256 (66.02%), Postives = 205/256 (80.08%), Query Frame = 0 

Query: 5   YYLDYRSFISSFILWN-SWDEWVGLDRLLKFTEENVQKQLELNEKRGTDK--KAARASQI 64
           Y L    +   ++ W+ +WDEWVG+DRL+K+T+EN+QKQ ELN K+  +K  K +R S  
Sbjct: 73  YRLKEWRYYVHYLGWSKNWDEWVGVDRLMKYTDENLQKQRELNNKQDAEKSTKPSRVSYT 132

Query: 65  KPK--NVVKGRKRKNDA-SKEKNAVNVEKLVSIQIPLKLKKQLVDDSEFVTHLGKLVKLP 124
           KPK  NV +G+KRK+D+  KEK A+ +EKLV IQIP  LKKQL+DD EFVTHLGKLV+LP
Sbjct: 133 KPKGSNVPRGKKRKHDSILKEKGALPLEKLVIIQIPPTLKKQLIDDCEFVTHLGKLVRLP 192

Query: 125 RTPNVEDIMKKYLEYRLKKDGTKDESVGEIVKGLICYFDKALPAMLLYKSERQQYEELIV 184
           RTP+V+DI+KKYL+YRL+KDG   +SVGEI+KGL CYFDKALP MLLYKSERQQYEE + 
Sbjct: 193 RTPSVDDILKKYLDYRLRKDGMMTDSVGEIMKGLRCYFDKALPVMLLYKSERQQYEETVT 252

Query: 185 HDVSPSSIYGAEHLLRLFVRLPELLSQANIEEETLTELQQKLVDLLKFLRKNQNTFFLSS 244
            DV PS++YGAEHLLRLFV+LPELL  ANIEEETL ELQ KL D LKFL KNQ++FFLS+
Sbjct: 253 DDVDPSTVYGAEHLLRLFVKLPELLVYANIEEETLRELQHKLNDFLKFLHKNQSSFFLSA 312

Query: 245 YHVPENMETSTNNADD 255
           YH PE +ETSTNN  D
Sbjct: 313 YHAPEEIETSTNNLVD 328

[Close]
BLAST of Carg26298-RA vs. TrEMBL
Match: tr|A0A2I4HQ68|A0A2I4HQ68_9ROSI (protein MRG1-like isoform X1 OS=Juglans regia OX=51240 GN=LOC109020308 PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 5.0e-83
Identity = 166/251 (66.14%), Postives = 206/251 (82.07%), Query Frame = 0 

Query: 5   YYLDYRSFISSFILWNSWDEWVGLDRLLKFTEENVQKQLELNEKRGTDK--KAARASQIK 64
           Y +++R F+       +WDEWVG+DRL+KFTEENVQKQ  LN+K+  +K  K ARAS IK
Sbjct: 67  YQMEWRFFVHYPGWSKNWDEWVGVDRLMKFTEENVQKQQALNKKQSFEKNTKLARASLIK 126

Query: 65  PK--NVVKGRKRKND-ASKEKNAVNVEKLVSIQIPLKLKKQLVDDSEFVTHLGKLVKLPR 124
           PK  ++ + +KRK D  SKE   + +++LV+IQ+P  LKKQLVDD EF+THLGKLVKLPR
Sbjct: 127 PKSSHMARAKKRKTDFVSKEDGNLLLDRLVNIQLPPPLKKQLVDDCEFITHLGKLVKLPR 186

Query: 125 TPNVEDIMKKYLEYRLKKDGTKDESVGEIVKGLICYFDKALPAMLLYKSERQQYEELIVH 184
           TPNV+DI++KYL+YR+KKDG   +SVGE++KGL CYFDK LP MLLYKSERQQY+E I  
Sbjct: 187 TPNVDDILRKYLDYRMKKDGLIADSVGEVLKGLRCYFDKVLPVMLLYKSERQQYDEAISD 246

Query: 185 DVSPSSIYGAEHLLRLFVRLPELLSQANIEEETLTELQQKLVDLLKFLRKNQNTFFLSSY 244
           DVSPS++YGAEHLLRLFV+LPELL  ANIEEETL ELQQKL+D LKFL+K+Q+ FFLS+Y
Sbjct: 247 DVSPSTVYGAEHLLRLFVKLPELLYHANIEEETLMELQQKLIDFLKFLQKHQSAFFLSTY 306

Query: 245 HVPENMETSTN 251
           HVPE++ETSTN
Sbjct: 307 HVPEDIETSTN 317

The following BLAST results are available for this feature:
BLAST of Carg26298-RA vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022936816.14.4e-12394.74protein MRG1-like isoform X2 [Cucurbita moschata][more]
XP_022936818.14.4e-12394.74protein MRG1-like isoform X4 [Cucurbita moschata][more]
XP_022936819.14.4e-12394.74protein MRG1-like isoform X5 [Cucurbita moschata][more]
XP_022977073.14.4e-12394.74protein MRG1-like isoform X3 [Cucurbita maxima][more]
XP_022977071.14.4e-12394.74protein MRG1-like isoform X1 [Cucurbita maxima][more]
BLAST of Carg26298-RA vs. TAIR10
Match NameE-valueIdentityDescription
AT4G37280.11.3e-6551.56MRG family protein[more]
AT1G02740.11.9e-6455.70MRG family protein[more]
BLAST of Carg26298-RA vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q94C32|MRG1_ARATH2.4e-6451.56Protein MRG1 OS=Arabidopsis thaliana OX=3702 GN=MRG1 PE=1 SV=1[more]
sp|Q4V3E2|MRG2_ARATH3.5e-6355.70Protein MRG2 OS=Arabidopsis thaliana OX=3702 GN=MRG2 PE=1 SV=1[more]
sp|Q6C9M9|EAF3_YARLI2.5e-2933.70Chromatin modification-related protein EAF3 OS=Yarrowia lipolytica (strain CLIB ... [more]
sp|Q54RM0|EAF3_DICDI3.3e-2943.31NuA4 complex subunit EAF3 homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0... [more]
sp|Q5BBV4|EAF3_EMENI7.3e-2937.15Chromatin modification-related protein eaf3 OS=Emericella nidulans (strain FGSC ... [more]
BLAST of Carg26298-RA vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BU93|A0A1S3BU93_CUCME7.7e-11688.66protein MRG1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493579 PE=4 SV=1[more]
tr|A0A0A0L0E2|A0A0A0L0E2_CUCSA1.0e-11588.26Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641700 PE=4 SV=1[more]
tr|A0A1S3BU71|A0A1S3BU71_CUCME7.4e-11186.23protein MRG1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493579 PE=4 SV=1[more]
tr|A0A059BKD2|A0A059BKD2_EUCGR2.9e-8366.02Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F00003 PE=4 SV... [more]
tr|A0A2I4HQ68|A0A2I4HQ68_9ROSI5.0e-8366.14protein MRG1-like isoform X1 OS=Juglans regia OX=51240 GN=LOC109020308 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0006325chromatin organization
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR016197Chromo-like_dom_sf
IPR008676MRG
IPR026541MRG_dom
IPR038217MRG_C_sf
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006325 chromatin organization
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg26298Carg26298gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg26298-RA.exon.1Carg26298-RA.exon.1exon
Carg26298-RA.exon.2Carg26298-RA.exon.2exon
Carg26298-RA.exon.3Carg26298-RA.exon.3exon
Carg26298-RA.exon.4Carg26298-RA.exon.4exon
Carg26298-RA.exon.5Carg26298-RA.exon.5exon
Carg26298-RA.exon.6Carg26298-RA.exon.6exon
Carg26298-RA.exon.7Carg26298-RA.exon.7exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg26298-RA.CDS.1Carg26298-RA.CDS.1CDS
Carg26298-RA.CDS.2Carg26298-RA.CDS.2CDS
Carg26298-RA.CDS.3Carg26298-RA.CDS.3CDS
Carg26298-RA.CDS.4Carg26298-RA.CDS.4CDS
Carg26298-RA.CDS.5Carg26298-RA.CDS.5CDS
Carg26298-RA.CDS.6Carg26298-RA.CDS.6CDS
Carg26298-RA.CDS.7Carg26298-RA.CDS.7CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg26298-RACarg26298-RA-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 199..219
NoneNo IPR availableGENE3DG3DSA:2.30.30.140coord: 5..51
e-value: 3.9E-7
score: 31.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..78
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..59
NoneNo IPR availablePANTHERPTHR10880:SF33SUBFAMILY NOT NAMEDcoord: 6..253
IPR038217MRG, C-terminal domain superfamilyGENE3DG3DSA:1.10.274.30coord: 86..253
e-value: 1.8E-51
score: 175.9
IPR026541MRG domainPFAMPF05712MRGcoord: 71..239
e-value: 2.4E-47
score: 160.7
IPR026541MRG domainPROSITEPS51640MRGcoord: 85..252
score: 55.302
IPR008676MRGPANTHERPTHR10880MORTALITY FACTOR 4-LIKE PROTEINcoord: 6..253
IPR016197Chromo-like domain superfamilySUPERFAMILYSSF54160Chromo domain-likecoord: 20..109