Carg23563-RA (mRNA) Silver-seed gourd

Overview
NameCarg23563-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRibosomal protein
LocationCucurbita_argyrosperma_scaffold_235 : 46727 .. 50686 (-)
Sequence length1275
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCCCATACAGCCACTGTATCCCGACCTCTCCCCACGCGCTGACTCTTCGCTGACGCCATCTCAACGGCTGCCGCCGCACGTTGCAGTCTCTAGCCTCCCGGCGATCTCAGCCAACCGCCGCTCCCTCCGTTTCACAGTGTCTTCGCCTCACGAGTTAATCAGCGTTACTTGCTTTGTTGTTGTTTTTTTATTCTTAAATATTTATTCTTCCAAATTAGGGTGTTCCGAACAAGGTTAATGTGCCGTATCTGATAATTCCGATCAATTTTACTTCGCACTTTTCATACAGGCTTCTTCTAACCGGAATTATACTTTTTTTTTATTTGCGATTCGTCGGAACGGAAATGAATCCTAGTTTTGATTCATTTCTGTCTGTTTGTATTCTGTGGAATTTTATCCGTTTTTCTTGATTAGTTTGTGATTCTGCACTTTGCAATTTGGAATCATTTGGCGAATGTGATGCTGTTTCTATAACTAGCCGGTGATTAAGGTGTAATTATGATAAAGTGATAACTAAGGGAATGGCGTCATTTTCCGATTTCCGACTGATTTAGATTGAATATTTCTCACCTTTTCCTTTTCTGTGATGGATTTTTCTTTCTCCGGCGAAGGTTTTTTTTTGCTGATGGATTTTGTGCTGCTTCCTAGGTGATAACAGACAAACGGACTGTAACAACGCAAATTGCTTATGAAAACTCTATTCTTAAGCAAGTCCTGCTGCACAAAATACAGTCCCCAACCTGTACCGTTTAGGAATTTCATCGAGCTTGATCTTCTGTCTGTAGAAGTTGTTGGCAGTAAATTCAAACTCATTTTCGCAGATCGTTCTTACTTCTGTTCCTATTGTGTTTGGAGTATTTTTGGATCACAGCTGATTCTACAAGAGAAGAGTCGAAAATGGCTTTTAGAGGAAAGGAAATGATGAAGAAGATATGAAGAAGCGTTGGAGAAAACAATCTTGCGCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCAGACTCCAAAATAGTGATGATATAGGGCCTAGCGCGGTAGATTTGCTGCCGTCACATCCCAATTCGTAACCGTATACATGAAGATGGTGGCAACAAGTATGAACCTCTTTTCTTTCCTTTATTTTTTTCAAAATCTATGGTCAATTCTCTCTGGATGCATTTTATTGATTTGCCAAATTCCGTGGTTCAAAACCATTAGTCCCTTTCCCAATATGAGCATAGCTTAACGGTTAAAGGATATCATGTTAAGCCCAAGCCTGCCGCTAGCCGACTTGTTCTCTTTGGACTTTCCCTTTTGAGCTTCCCCTCAAGGTTTTAAAACGCGTCCACTATGGAGATGTTTCCACACCCTTGTAAGAAATGTTTCGTTCCCCTTTCCAACCAATGTGGGATCTCATAATCCACCCCTTGGAGGTCAGCGTCCTTGCTGACACACTGCCCAGTGTCTTGTTTTGATACCATTTGTAATAGTCTAAGTCCACTGCTAACAAAATATTGTCCTCTTTGAGATTTCCCTACTGGGCTTCCCCACAAGGTTTTAAAATGCATCTACTATGGAGAAGTTTCCACGCTCTTGTAAGAAATGGTTCGTCCCCCTCTCCAACCAATGTGGGATCTCACAATCCCACCCTCTTGGAGGTTAGTGTCCTCACTGACACACTGCCCAGTGTCTGGCTCTGATACCATTTGTAATAGCCTAAGCCCACTGCTAACAAATATTGTCATCTTTGAGATTTCCCTGCTAGGCATCCTCTCAAGGTTTTAAAACGTGTCTACTAGGGGGAGGTTTCCACACCCTTGTAAGGAATGTTTCGTTCCCCTCTCCAACTAGTGTGGGATCTCATAATCCACCCCCTTGGATGTTAGCGTCCTCGCTTACACATCGCCCAGTTTCTTTCTCTGATACCATTTGTAATAGCCTAAGCCTACCGCTAGCAAATATTGTCCTCTTTGGGATTTCTCTGCTGGGCTTCCCCTCAAGGTTTTAAAACGCGTCTACTAGGGAGAGGTTTCCACACCCTTGTAAGGAATGTTTCGTTCCCCAACTCCAACAATGTAGATCTCATCAATCCACCCCCCTTGGAGGTCAGCGTCTCACTAAACACTCACCTGGTTCTGGCTCGATACCATTTGTAAGAGCCTAAGCCACCCTACGCAGATATTGTACCTCGTTGGATTCCTCTTGCCGGGCTTCCCTACAAGGTTTTAAAACGCATCTACTAGGGAGAGGTTTTCACACCCTTATAAGGAATGTTTCGTTCTCCTCTTCAATCAAATGTGAGACTTTCACACATCAACCTCTACCTTTTTTTTTCTTTCTAACTAGTTCAAATTTTCCACACCCCACCAAAAAAAAAAAAAAAGGAAAAAGAGGAAGAAGAAGATTCTTTAGCTCCCTTTATTCCATAAGCTTTGATTTATTGTTTTTTACAATTGCAAAATGGAAAGGCGCCATAAATGAATAAATTCATAGCAACAAAACATCTGGCAGAAGATTCTTGCGGTTACTATTTTCAAAACTTCGTCTTTGTGTTCATTGTTTCTGCATTTCTTTCTTATCTGTTTGTTGCGCCTTCTTATGGGGTTGGATTTTGGGAGGCGGGTTAGCATATGAATCAATTTTCTGGCTAAAACTTCTTCACCACACTACTTGATTACGAATGTAGTTAGAATCCCAAGTGGAGATTTGTAATGCTTTGCTCTGAGCTTTTTATGCCCTCACTCCTTTGTCAATCTGAACATGTGAAGAACCCTAAGAATTAGGGTGATTGTCGGGCGTGAAGTCGGCTTCCAGCGTGTTGTCTCGCTTCCTAAGCCCAACCACCCCGACCCTCTGTATTGACAAATCCAAGTCGAGGAAAACCCAACCGGCTCAAACAACATCCTTTTTTTTTTTTTTTTACTTTTATTTTCAACCCCTCCCTTTGCCTCACTATTCGACCAGGTTCCTAAACTGGTGCCCCCAAATACCAGAACCTTTGTGAACCCAAAGATCCATTAGATTTTGGAAGAGAAAATGAACTTATAGTGGTTTCCTTCTGTGTGTAACGTTATTGGTTTTTTGCCTTTATGTTGTAGCCTTATATTTACATGTCAAGGTTATGCCTCTCTTGCTCTTGTATTAAGAAATTCGAGAGCACATTAGAATAATTTTCTTTTCTCTCCTTTGGTTTCGGCCTTATGTTCATATACAGTTCGGTGCGTTTTACGATTATTTACGATTATTTTGTCATGCTATCAATTTTCAATTTTGGAGTATTAGCCGTTATGTGCTGGTGCTTATAGGTCAAGAAGGAACTGGAAACCAAATGTCCAAGAGAAGCGACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACCACTCATGCCCTTCGATGCATCGACAAGGCCGGTGGAATTGATGAGTATCTGCTGAAAACTCCATACCACAAAATGGACACTGAAATTGGGCTGTTTTGGAAGGCAAAAATCGAGAAGCTGTACGAAGAACTCGGGCAGATGGAGGTCGTTTTCTTCTCACCGGAGGACGAAGCTAAATTTGAACAGGGCTTTAGAGACCTGAAATTATCCGAGAGGGCAGCACGAAAGGAGGCGAGAAGACGGATGTATGGTAGTTCGACCCAACGTGATCAGATCGAAGAGGGAGAAGCAGACCGTGGTGGATCTAGCGAGGAAGTTGCAGGTTCCGAAGGAGGCTCCCATGGTGGTGATGGTCCACAGCAATGGGTTGCCAACGCCTAATTAATTATAGGACGACTTTTTTTCCAACTTGTGAGTTCTTCAAGCCTGGACTCGTTCCTACCTTTTCATTGAAATCCTTTGTAGCTTATTTGTATTTGGTTTAATGTTAAATGTATTCAGATAGAAATGGGAATTGTTCTTTGGAAATTGAGATGTGAAATCTTAAAACTTATTGTTCAATAAGATTAGGCTTAATATATGATTTCCCC

mRNA sequence

TTCCCATACAGCCACTGTATCCCGACCTCTCCCCACGCGCTGACTCTTCGCTGACGCCATCTCAACGGCTGCCGCCGCACGTTGCAGTCTCTAGCCTCCCGGCGATCTCAGCCAACCGCCGCTCCCTCCGTTTCACAGTGTCTTCGCCTCACGAGTGATAACAGACAAACGGACTGTAACAACGCAAATTGCTTATGAAAACTCTATTCTTAAGCAAGTCCTGCTGCACAAAATACAGTCCCCAACCTGTACCGTTTAGGAATTTCATCGAGCTTGATCTTCTGTCTGTAGAAGTTGTTGGCAGTAAATTCAAACTCATTTTCGCAGATCGTTCTTACTTCTGTTCCTATTGTGTTTGGAGTATTTTTGGATCACAGCTGATTCTACAAGAGAAGAGTCGAAAATGGCTTTTAGAGGAAAGGAAATGATGAAGAAGATATGAAGAAGCGTTGGAGAAAACAATCTTGCGCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCAGACTCCAAAATAGTGATGATATAGGGCCTAGCGCGGTAGATTTGCTGCCGTCACATCCCAATTCGTAACCGTATACATGAAGATGGTGGCAACAAGTCAAGAAGGAACTGGAAACCAAATGTCCAAGAGAAGCGACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACCACTCATGCCCTTCGATGCATCGACAAGGCCGGTGGAATTGATGAGTATCTGCTGAAAACTCCATACCACAAAATGGACACTGAAATTGGGCTGTTTTGGAAGGCAAAAATCGAGAAGCTGTACGAAGAACTCGGGCAGATGGAGGTCGTTTTCTTCTCACCGGAGGACGAAGCTAAATTTGAACAGGGCTTTAGAGACCTGAAATTATCCGAGAGGGCAGCACGAAAGGAGGCGAGAAGACGGATGTATGGTAGTTCGACCCAACGTGATCAGATCGAAGAGGGAGAAGCAGACCGTGGTGGATCTAGCGAGGAAGTTGCAGGTTCCGAAGGAGGCTCCCATGGTGGTGATGGTCCACAGCAATGGGTTGCCAACGCCTAATTAATTATAGGACGACTTTTTTTCCAACTTGTGAGTTCTTCAAGCCTGGACTCGTTCCTACCTTTTCATTGAAATCCTTTGTAGCTTATTTGTATTTGGTTTAATGTTAAATGTATTCAGATAGAAATGGGAATTGTTCTTTGGAAATTGAGATGTGAAATCTTAAAACTTATTGTTCAATAAGATTAGGCTTAATATATGATTTCCCC

Coding sequence (CDS)

ATGGACACTGAAATTGGGCTGTTTTGGAAGGCAAAAATCGAGAAGCTGTACGAAGAACTCGGGCAGATGGAGGTCGTTTTCTTCTCACCGGAGGACGAAGCTAAATTTGAACAGGGCTTTAGAGACCTGAAATTATCCGAGAGGGCAGCACGAAAGGAGGCGAGAAGACGGATGTATGGTAGTTCGACCCAACGTGATCAGATCGAAGAGGGAGAAGCAGACCGTGGTGGATCTAGCGAGGAAGTTGCAGGTTCCGAAGGAGGCTCCCATGGTGGTGATGGTCCACAGCAATGGGTTGCCAACGCCTAA

Protein sequence

MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSSTQRDQIEEGEADRGGSSEEVAGSEGGSHGGDGPQQWVANA
Homology
[Close]
BLAST of Carg23563-RA vs. NCBI nr
Match: XP_023553194.1 (uncharacterized protein LOC111810681 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 185.3 bits (469), Expect = 1.1e-43
Identity = 97/102 (95.10%), Postives = 99/102 (97.06%), Query Frame = 0 

Query: 1   MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYG 60
           MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYG
Sbjct: 119 MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYG 178

Query: 61  SSTQRDQIEEGEADRGGSSEEVAGSEGGSHGGDGPQQWVANA 103
           SSTQ DQIEEG+ADR  SSEEVAGSEGGSHGGDGPQQWV+NA
Sbjct: 179 SSTQHDQIEEGQADRAESSEEVAGSEGGSHGGDGPQQWVSNA 220

[Close]
BLAST of Carg23563-RA vs. NCBI nr
Match: XP_022923524.1 (uncharacterized protein LOC111431195 [Cucurbita moschata])

HSP 1 Score: 181.8 bits (460), Expect = 1.2e-42
Identity = 97/102 (95.10%), Postives = 98/102 (96.08%), Query Frame = 0 

Query: 1   MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYG 60
           MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYG
Sbjct: 119 MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYG 178

Query: 61  SSTQRDQIEEGEADRGGSSEEVAGSEGGSHGGDGPQQWVANA 103
           SSTQ DQIEEG+ADR GSSEEVAGSEGGSHG DGPQQ VANA
Sbjct: 179 SSTQHDQIEEGQADRAGSSEEVAGSEGGSHGDDGPQQCVANA 220

[Close]
BLAST of Carg23563-RA vs. NCBI nr
Match: XP_022965371.1 (uncharacterized protein LOC111465250 [Cucurbita maxima])

HSP 1 Score: 166.4 bits (420), Expect = 5.1e-38
Identity = 89/93 (95.70%), Postives = 90/93 (96.77%), Query Frame = 0 

Query: 1   MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYG 60
           MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKE RRRMYG
Sbjct: 119 MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKETRRRMYG 178

Query: 61  SSTQRDQIEEGEADRGGSSEEVAGSEGGSHGGD 94
           SSTQRDQIEEG+ADR GSSEEVAGSEGGSHG D
Sbjct: 179 SSTQRDQIEEGQADRVGSSEEVAGSEGGSHGDD 211

[Close]
BLAST of Carg23563-RA vs. NCBI nr
Match: XP_022145425.1 (uncharacterized protein LOC111014872 [Momordica charantia])

HSP 1 Score: 159.5 bits (402), Expect = 6.2e-36
Identity = 86/103 (83.50%), Postives = 92/103 (89.32%), Query Frame = 0 

Query: 1   MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYG 60
           MDTEIGLFWKAKI KLYEELGQMEVVFFSPEDEAKFEQGFR+LKL+ERAARKEARR+ YG
Sbjct: 119 MDTEIGLFWKAKITKLYEELGQMEVVFFSPEDEAKFEQGFRELKLAERAARKEARRQTYG 178

Query: 61  SSTQRDQIEEGEADRGGSSEEVA-GSEGGSHGGDGPQQWVANA 103
           SS+  DQIEEG ADR G+ +E A GSEGGSHG DG QQWVANA
Sbjct: 179 SSSNHDQIEEGRADRHGTGKEAADGSEGGSHGDDGSQQWVANA 221

[Close]
BLAST of Carg23563-RA vs. NCBI nr
Match: XP_021908363.1 (uncharacterized protein LOC110822535 [Carica papaya] >XP_021908364.1 uncharacterized protein LOC110822535 [Carica papaya])

HSP 1 Score: 124.0 bits (310), Expect = 2.9e-25
Identity = 71/103 (68.93%), Postives = 83/103 (80.58%), Query Frame = 0 

Query: 1   MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYG 60
           MDTE+GLFWK+KIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKL+ERAAR+EARR++Y 
Sbjct: 119 MDTEMGLFWKSKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLAERAARREARRQIYA 178

Query: 61  SSTQRDQIEEGE-ADRGGSSEEVAGSEGGSHGGDGPQQWVANA 103
            S ++DQIEEG   D+    +  +  EG SH GD  +Q V NA
Sbjct: 179 VSGKQDQIEEGSVGDKVADEKAASFGEGSSHVGD-HEQLVVNA 220

[Close]
BLAST of Carg23563-RA vs. TAIR10
Match: AT4G31460.1 (Ribosomal L28 family)

HSP 1 Score: 76.6 bits (187), Expect = 9.6e-15
Identity = 34/51 (66.67%), Postives = 43/51 (84.31%), Query Frame = 0 

Query: 1   MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAAR 52
           MDTE+GL+WK K+E  Y ELGQMEV FF+PEDEAK EQGF+DL ++++ AR
Sbjct: 119 MDTEMGLYWKTKVEARYAELGQMEVAFFNPEDEAKLEQGFKDLNIAKKDAR 169

[Close]
BLAST of Carg23563-RA vs. TrEMBL
Match: tr|A0A1Q3CCT5|A0A1Q3CCT5_CEPFO (Ribosomal_L28 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_21351 PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 7.3e-25
Identity = 70/103 (67.96%), Postives = 81/103 (78.64%), Query Frame = 0 

Query: 1   MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYG 60
           MDTE+GLFWKAKIEKLYEELGQMEVVFFS EDEAKFEQGF+DL+L+ER ARKEARR+MYG
Sbjct: 120 MDTEMGLFWKAKIEKLYEELGQMEVVFFSTEDEAKFEQGFKDLRLAERGARKEARRQMYG 179

Query: 61  SSTQRDQIEEGEADRGGSSEEVAG-SEGGSHGGDGPQQWVANA 103
            S +  Q EEG  +    +EE A   EG SH  D P+Q +AN+
Sbjct: 180 WSGKHKQTEEGSEEDHVKNEEAASLGEGSSH--DTPEQLIANS 220

[Close]
BLAST of Carg23563-RA vs. TrEMBL
Match: tr|A0A2I4EDZ6|A0A2I4EDZ6_9ROSI (uncharacterized protein LOC108988738 OS=Juglans regia OX=51240 GN=LOC108988738 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.2e-24
Identity = 67/101 (66.34%), Postives = 81/101 (80.20%), Query Frame = 0 

Query: 1   MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYG 60
           MDTE+GL+WKAKIEKLYEELG+MEVVFFSPEDE KFEQGF+DLKLSERAAR+EARR+MYG
Sbjct: 120 MDTEMGLYWKAKIEKLYEELGKMEVVFFSPEDEDKFEQGFKDLKLSERAARREARRQMYG 179

Query: 61  SSTQRDQIEEGEADRGGSSEEVAGSEGGSHGGDGPQQWVAN 102
            S +  +IE G+ +   + E+ A +  GS   D P+Q VAN
Sbjct: 180 LSNKHGEIEGGQVEGQVTDEDAARTGDGSSHHDFPEQLVAN 220

[Close]
BLAST of Carg23563-RA vs. TrEMBL
Match: tr|A0A2R6RFW8|A0A2R6RFW8_ACTCH (54S ribosomal protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc06437 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.7e-24
Identity = 66/104 (63.46%), Postives = 82/104 (78.85%), Query Frame = 0 

Query: 1   MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYG 60
           MDTE+GLFWKAKIEK+YEELG+MEVVFFSPEDEAKFE+GF++LKL+ERAAR+++RR+MYG
Sbjct: 120 MDTEMGLFWKAKIEKMYEELGEMEVVFFSPEDEAKFEEGFKELKLAERAARRDSRRQMYG 179

Query: 61  SSTQRDQIEEGEADRGGSSEEVAGSEGGSHGG--DGPQQWVANA 103
            S ++ QIEE            AG EGG +G   D P+Q VAN+
Sbjct: 180 GSGKQKQIEERR----------AGGEGGDNGSHRDAPEQLVANS 213

[Close]
BLAST of Carg23563-RA vs. TrEMBL
Match: tr|A0A2R6Q2S4|A0A2R6Q2S4_ACTCH (54S ribosomal protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc22536 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 8.0e-24
Identity = 65/102 (63.73%), Postives = 80/102 (78.43%), Query Frame = 0 

Query: 1   MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYG 60
           MDTE+GLFWKAKIEK+YEELG+MEVVFFSPEDEAKFE+GF++LKL+ERAAR++ARR+MYG
Sbjct: 120 MDTEMGLFWKAKIEKMYEELGEMEVVFFSPEDEAKFEEGFKELKLAERAARRDARRQMYG 179

Query: 61  SSTQRDQIEEGEADRGGSSEEVAGSEGGSHGGDGPQQWVANA 103
            S ++ QIEEG              + GSH  D P+Q VAN+
Sbjct: 180 GSGKQKQIEEG--------------DDGSH-SDAPEQLVANS 206

[Close]
BLAST of Carg23563-RA vs. TrEMBL
Match: tr|A0A068VCA3|A0A068VCA3_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00009057001 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.1e-23
Identity = 66/102 (64.71%), Postives = 80/102 (78.43%), Query Frame = 0 

Query: 1   MDTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYG 60
           MDTE+GL+WKAKIEKLYEELG+MEVVFFSPEDEAKFE+ FR+LKL +RAAR+EARR+MYG
Sbjct: 120 MDTEMGLYWKAKIEKLYEELGEMEVVFFSPEDEAKFEEQFRELKLEQRAARREARRKMYG 179

Query: 61  SSTQRDQIEEGEADRGGSSEEVAGSEGGSHGGDGPQQWVANA 103
            S + + I+EG AD  G+ +E A    GS   D  +  VANA
Sbjct: 180 WSGKSEAIDEGRADAEGTHQEAARHGEGSSDADIHEPQVANA 221

The following BLAST results are available for this feature:
BLAST of Carg23563-RA vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023553194.11.1e-4395.10uncharacterized protein LOC111810681 [Cucurbita pepo subsp. pepo][more]
XP_022923524.11.2e-4295.10uncharacterized protein LOC111431195 [Cucurbita moschata][more]
XP_022965371.15.1e-3895.70uncharacterized protein LOC111465250 [Cucurbita maxima][more]
XP_022145425.16.2e-3683.50uncharacterized protein LOC111014872 [Momordica charantia][more]
XP_021908363.12.9e-2568.93uncharacterized protein LOC110822535 [Carica papaya] >XP_021908364.1 uncharacter... [more]
BLAST of Carg23563-RA vs. TAIR10
Match NameE-valueIdentityDescription
AT4G31460.19.6e-1566.67Ribosomal L28 family[more]
BLAST of Carg23563-RA vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg23563-RA vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1Q3CCT5|A0A1Q3CCT5_CEPFO7.3e-2567.96Ribosomal_L28 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CF... [more]
tr|A0A2I4EDZ6|A0A2I4EDZ6_9ROSI1.2e-2466.34uncharacterized protein LOC108988738 OS=Juglans regia OX=51240 GN=LOC108988738 P... [more]
tr|A0A2R6RFW8|A0A2R6RFW8_ACTCH4.7e-2463.4654S ribosomal protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_... [more]
tr|A0A2R6Q2S4|A0A2R6Q2S4_ACTCH8.0e-2463.7354S ribosomal protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_... [more]
tr|A0A068VCA3|A0A068VCA3_COFCA1.1e-2364.71Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00009057001 PE=3 ... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg23563Carg23563gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg23563-RACarg23563-RA-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg23563-RA.three_prime_UTR.1Carg23563-RA.three_prime_UTR.1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg23563-RA.CDS.1Carg23563-RA.CDS.1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg23563-RA.five_prime_UTR.3Carg23563-RA.five_prime_UTR.3five_prime_UTR
Carg23563-RA.five_prime_UTR.2Carg23563-RA.five_prime_UTR.2five_prime_UTR
Carg23563-RA.five_prime_UTR.1Carg23563-RA.five_prime_UTR.1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg23563-RA.exon.3Carg23563-RA.exon.3exon
Carg23563-RA.exon.2Carg23563-RA.exon.2exon
Carg23563-RA.exon.1Carg23563-RA.exon.1exon


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..102