CsaV3_7G003560 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G003560
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 2654436 .. 2655839 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCTGTATTATAAGATTAAGATGGCGGCCTTGTCTTTGTCCCCATCTTGTGAGCGTTTCATCATCTCCCTTTTACCTTATTGACTCCATGCTTGGCTTGGCATATTTTTGACGAAGTATTCTTAAATTGTTTAACATAGGTTAGGGGATATAATTTGCAAAGGAGTGAAATTTCAGTAGAGCTTAAGCTACCATTTAAATGGAATTCACGACTAAAGTCACTTCCAGAGTTCCAGGTAAATGACCAACCTTCGTTTTTCTGATTGTAAAGTTTGTTTTTAAAATTGTAGTAGCACTATGAGGGTGAGGATCAGAAATTAGAATCACAGATCTCTCGGTTAGGCTAACACGTCAGTTGTGCTAATTTGATTGTTTAAGTTAAATATTTGATTTGGTCTTTTAAACCTTTTGAAAATTTAAAAACTTGGATGTATTATATTTTAAATGAAGACATTCCAGAAATAAGTTTGCTAAAATTTATTAACTTAAAGTAATTGTGTAGTTGAATTTTTGTTTTAGTAACATACTTAGACATGCCTCTTGGTAGAAATGTGTTTTTCCCCTTTCTTGCTTAGGCGGGTGGTGTTCTATACGTCAGGTAGAATTTATATGGCAAGCTTTAGTAATTCAATGATACACCAAATTTGTTTTGACAAATGTTAACCAATTTCTTAATGGAAAGGACCTAATGCAGAATTCTGTATACATTGGAGGTTATACTGAGATCAAATTGAGAATTATCTAAAAGATTAAAATACCTGGTTTATATCTAGCCGACGGATATAAAAAAAATCTATTTAAGAGTTCAGATATCAACATCTTCTTAAGACCCTTTGGGGTAAGGGCTAATATAGGGCCAGTATTGTTTCTTATATTGACAATATTTTTAACTATTAATTCAATTGTTTTTTTTATAAAGAAATGTGAAATTCACAATGGAGAAATTAGGAGAAGTGAATTGCATTTTTCAATTATAAATTTTGGTTAGAATTTTAATCACACTTAGAAATAGATTTTATTTTTGTTTACTATCAAAGTGAAAATGTGAACTTTTAACTTTTGGTAGACTTAACAAGTTTGCCTTGAAAGATGAACTAGATTAAAAAGAGATGGTTGGTAGATGCGTTGAACTGAACTTTGAAATAAAAGAGTAATATCCATCTTAGGTAGAAACTATACCTAATCAGGTAACATTGTGTAACATCTAAATTAGTAAATAATATCATTAGCCTGACATCAAGGATGCTTTGTTAAGACAATATTGTCTTAGCCATTGGGAGAAAAAGACAGTCTAACAAATAGTCTTTTAATGGTGGAATTTTACTATGGCTTCTATCTAATAATGGCAGGGACCAGCAATTCAATTGAACTTATGTGGGAGCAACATCTTAACAATCATCAG

mRNA sequence

ATGGTCTGTATTATAAGATTAAGATGGCGGCCTTGTCTTTGTCCCCATCTTGTTAGGGGATATAATTTGCAAAGGAGTGAAATTTCAGTAGAGCTTAAGCTACCATTTAAATGGAATTCACGACTAAAGTCACTTCCAGAGTTCCAGGGACCAGCAATTCAATTGAACTTATGTGGGAGCAACATCTTAACAATCATCAG

Coding sequence (CDS)

ATGGTCTGTATTATAAGATTAAGATGGCGGCCTTGTCTTTGTCCCCATCTTGTTAGGGGATATAATTTGCAAAGGAGTGAAATTTCAGTAGAGCTTAAGCTACCATTTAAATGGAATTCACGACTAAAGTCACTTCCAGAGTTCCAGGGACCAGCAATTCAATTGAACTTATGTGGGAGCAACATCTTAACAATCATCAG

Protein sequence

MVCIIRLRWRPCLCPHLVRGYNLQRSEISVELKLPFKWNSRLKSLPEFQGPAIQLNLCGSNILTIIX
Homology
[Close]
BLAST of CsaV3_7G003560 vs. NCBI nr
Match: KGN58671.1 (hypothetical protein Csa_3G727890 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 6.7e-31
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  MVCIIRLRWRPCLCPHLVRGYNLQRSEISVELKLPFKWNSRLKSLPEFQGPAIQLNLCGS 60
          MVCIIRLRWRPCLCPHLVRGYNLQRSEISVELKLPFKWNSRLKSLPEFQGPAIQLNLCGS
Sbjct: 19 MVCIIRLRWRPCLCPHLVRGYNLQRSEISVELKLPFKWNSRLKSLPEFQGPAIQLNLCGS 78

Query: 61 NILTII 67
          NILTII
Sbjct: 79 NILTII 84

[Close]
BLAST of CsaV3_7G003560 vs. NCBI nr
Match: XP_011651826.1 (PREDICTED: uncharacterized protein LOC105434945 isoform X1 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 6.7e-31
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1   MVCIIRLRWRPCLCPHLVRGYNLQRSEISVELKLPFKWNSRLKSLPEFQGPAIQLNLCGS 60
           MVCIIRLRWRPCLCPHLVRGYNLQRSEISVELKLPFKWNSRLKSLPEFQGPAIQLNLCGS
Sbjct: 54  MVCIIRLRWRPCLCPHLVRGYNLQRSEISVELKLPFKWNSRLKSLPEFQGPAIQLNLCGS 113

Query: 61  NILTII 67
           NILTII
Sbjct: 114 NILTII 119

[Close]
BLAST of CsaV3_7G003560 vs. NCBI nr
Match: XP_011651827.1 (PREDICTED: uncharacterized protein LOC105434945 isoform X2 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 6.7e-31
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  MVCIIRLRWRPCLCPHLVRGYNLQRSEISVELKLPFKWNSRLKSLPEFQGPAIQLNLCGS 60
          MVCIIRLRWRPCLCPHLVRGYNLQRSEISVELKLPFKWNSRLKSLPEFQGPAIQLNLCGS
Sbjct: 23 MVCIIRLRWRPCLCPHLVRGYNLQRSEISVELKLPFKWNSRLKSLPEFQGPAIQLNLCGS 82

Query: 61 NILTII 67
          NILTII
Sbjct: 83 NILTII 88

[Close]
BLAST of CsaV3_7G003560 vs. TrEMBL
Match: tr|A0A0A0LF24|A0A0A0LF24_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G727890 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 4.5e-31
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  MVCIIRLRWRPCLCPHLVRGYNLQRSEISVELKLPFKWNSRLKSLPEFQGPAIQLNLCGS 60
          MVCIIRLRWRPCLCPHLVRGYNLQRSEISVELKLPFKWNSRLKSLPEFQGPAIQLNLCGS
Sbjct: 19 MVCIIRLRWRPCLCPHLVRGYNLQRSEISVELKLPFKWNSRLKSLPEFQGPAIQLNLCGS 78

Query: 61 NILTII 67
          NILTII
Sbjct: 79 NILTII 84

The following BLAST results are available for this feature:
BLAST of CsaV3_7G003560 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN58671.16.7e-31100.00hypothetical protein Csa_3G727890 [Cucumis sativus][more]
XP_011651826.16.7e-31100.00PREDICTED: uncharacterized protein LOC105434945 isoform X1 [Cucumis sativus][more]
XP_011651827.16.7e-31100.00PREDICTED: uncharacterized protein LOC105434945 isoform X2 [Cucumis sativus][more]
BLAST of CsaV3_7G003560 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G003560 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G003560 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LF24|A0A0A0LF24_CUCSA4.5e-31100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G727890 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
cellular_component GO:0005575 cellular_component
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0008408 3'-5' exonuclease activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G003560.1CsaV3_7G003560.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G003560CsGy7G003340Cucumber (Gy14) v2cgybcucB348
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G003560Cucumber (Chinese Long) v3cuccucB099
CsaV3_7G003560Cucumber (Chinese Long) v3cuccucB213
CsaV3_7G003560Silver-seed gourdcarcucB0034
CsaV3_7G003560Silver-seed gourdcarcucB0378
CsaV3_7G003560Silver-seed gourdcarcucB0675
CsaV3_7G003560Silver-seed gourdcarcucB0915
CsaV3_7G003560Cucumber (Gy14) v2cgybcucB094
CsaV3_7G003560Cucumber (Gy14) v2cgybcucB305
CsaV3_7G003560Cucumber (Gy14) v1cgycucB029
CsaV3_7G003560Cucumber (Gy14) v1cgycucB071
CsaV3_7G003560Cucumber (Gy14) v1cgycucB226
CsaV3_7G003560Cucurbita maxima (Rimu)cmacucB0172
CsaV3_7G003560Cucurbita maxima (Rimu)cmacucB0269
CsaV3_7G003560Cucurbita maxima (Rimu)cmacucB0638
CsaV3_7G003560Cucurbita maxima (Rimu)cmacucB0684
CsaV3_7G003560Cucurbita maxima (Rimu)cmacucB0768
CsaV3_7G003560Cucurbita maxima (Rimu)cmacucB0813
CsaV3_7G003560Cucurbita maxima (Rimu)cmacucB1040
CsaV3_7G003560Cucurbita moschata (Rifu)cmocucB0155
CsaV3_7G003560Cucurbita moschata (Rifu)cmocucB0622
CsaV3_7G003560Cucurbita moschata (Rifu)cmocucB0672
CsaV3_7G003560Cucurbita moschata (Rifu)cmocucB0754
CsaV3_7G003560Cucurbita moschata (Rifu)cmocucB0797
CsaV3_7G003560Cucurbita pepo (Zucchini)cpecucB0322
CsaV3_7G003560Cucurbita pepo (Zucchini)cpecucB0367
CsaV3_7G003560Cucurbita pepo (Zucchini)cpecucB0863
CsaV3_7G003560Cucurbita pepo (Zucchini)cpecucB0946
CsaV3_7G003560Wild cucumber (PI 183967)cpicucB061
CsaV3_7G003560Wild cucumber (PI 183967)cpicucB116
CsaV3_7G003560Wild cucumber (PI 183967)cpicucB373
CsaV3_7G003560Wild cucumber (PI 183967)cpicucB415
CsaV3_7G003560Bottle gourd (USVL1VR-Ls)cuclsiB521
CsaV3_7G003560Bottle gourd (USVL1VR-Ls)cuclsiB529
CsaV3_7G003560Melon (DHL92) v3.5.1cucmeB532
CsaV3_7G003560Melon (DHL92) v3.5.1cucmeB548
CsaV3_7G003560Melon (DHL92) v3.5.1cucmeB588
CsaV3_7G003560Melon (DHL92) v3.6.1cucmedB522
CsaV3_7G003560Melon (DHL92) v3.6.1cucmedB536
CsaV3_7G003560Melon (DHL92) v3.6.1cucmedB576
CsaV3_7G003560Watermelon (Charleston Gray)cucwcgB580
CsaV3_7G003560Watermelon (Charleston Gray)cucwcgB561
CsaV3_7G003560Watermelon (Charleston Gray)cucwcgB571
CsaV3_7G003560Watermelon (Charleston Gray)cucwcgB575
CsaV3_7G003560Watermelon (97103) v1cucwmB609
CsaV3_7G003560Watermelon (97103) v1cucwmB629
CsaV3_7G003560Watermelon (97103) v1cucwmB623
CsaV3_7G003560Watermelon (97103) v1cucwmB626
CsaV3_7G003560Watermelon (97103) v2cucwmbB534
CsaV3_7G003560Watermelon (97103) v2cucwmbB549
CsaV3_7G003560Watermelon (97103) v2cucwmbB552
CsaV3_7G003560Wax gourdcucwgoB695
CsaV3_7G003560Wax gourdcucwgoB703
CsaV3_7G003560Wax gourdcucwgoB711