CsaV3_6G036350.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G036350.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 20200457 .. 20203306 (+)
Sequence length372
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTCACCTTCCTTCCCCCTTCAAAATCTCTCCTTATATAATCCCTTCCTTTTCCTCTCTTTCCCTTCACTCATTCATCTCTCCAAATTTTTTCTTCTTTTTTCCTCTTCTTCTACTCCTTCTTCCTTGTGTGTGTGATAATTTATATATGCTTTCAATATGCCTGGCTCCCTGTATGCCATTTGTAGAGCGCTCACCGTCATACCCGATGGCCTCCGCGCATGGCGTATGAGGAGCCAAGCATATCCATGTCTATATTTCCTATTATATATATATGTATGTATACCCTATCTAGTCATGTTTTCAAATCTCTAATTTCTATAAAGTATATATCTCTTTCTTTGTTTTTTATTTTGAAAATCAAATACGCACGGTTGAGGGGTCATTGGATGTATCGAGCTATCTTATTAAGTCGCCTATTATATTCTTTTGTTTTTGTTTTAACCCTAATGTTTTAATTACTTGAGCTATCTTATTAAGTCGCCTTGTGAATATTGTTAAAAAAAGCATTTCTCAATCTTATGTTTTGTGTACTTTTTTTTCCTATTAATGGACAGTGATTGAAGGAGAATTTTTATTTTTTTTCTTCATCTTTTTGCATTTTCTATGTTAAAGTTTTCCGTTTTTTACGGGCTTCTATTTACTGTAGTGTTAACTTAATTCATTAGATTTGTTTTTTTTCAAAAAAAATTAATAATATTACTATTACAGCTAACCCTAATTTCAAAGGCTGCTGGAAAAAGGGAAGAAGAAAAACCCAAACTTCAAACAGTTCATCTCCATTTCTCAATATATTTTACAATGTATTTCACTCAAGAGGTACCTTTTTATTTTTTATTATTATTTACTGCTATTTTCTTCTTCTTCTTCTTCCTCAAGAAATTTAGGGTTTTTTTTCTTTTCTTTTCTTTTTTTGCAGAAAGAATATCACAGACTCACAGACAATAGTACGCCTTTTTTTTTAGGTGTTGGACCATTATTATTTTCCTTAAGTTTAGGGTTCTTCTGATTTGGAAATTAATTTAATCTCATTTTATTACAAACTAATTTCTTTCCTATTTGGCAGTGGAATTTATATATTTATTACCAAAAATATGCAAATTGATTATATTTAAAACTAGTATGGAAAACGCAATGTTTATGAAATACATTGAGTTTAATGTTTATGATATTTCTGAAGCATGGGATGAATGTTATATATATATATATATTAATATTCTTAATTATTTCTATCTCATTGGGAAAACGCAATGGAATCTGGATTACATGTTATGTATATACAAATGTAGAATATCAAAAGGAGTGCCCAATCGACCGAAGATCTGATGAGTTTAATTCTGATCGTGCGGTGATGCGTGTTCGAGAAGAGGGGAGTATCATAGATCTGACCTCAGGGGATCCCAAATAGGTTTTTTTCTTTTCTTTTTTATAGGGTTTATTATATGTTCTTGTTCCTTTGTGAATATATAATCTTAGTTGTGTTTGTATATTACAATGGAAAAGATGTGAGTATAGAGAGAGAGGAAGAGAAAGAGGGAGAGAAGGGATTCTCTCTTAGCTTAGGGTTATCTGCATAGCATCTTAGCCCAAATAGCTACCCATTTTATTACATTATCTAATGAAATTATTATTATTTTTATTTTTATTTTCCTCTAAACATATATATCTTCTTTCTTTCTCTTTGAAGTTGGCTTTTTGTTTAGAATGGAAATTTGAAATCTAACCAGAAAGAATGAAATATATGTCAAATACTGCTCAATGAAGGGTGTTGAGCATGTGCAAGAACTGCATATACCCCAAAAGAAATTATTAAAGAGTATTATGTAAAATTTTGCTTTTTTGTTTTCTTTATTGAAAAATTTTGGTAGACATGCAAAAATGATTGATGAAGATTAACTAGGGTACTCTTATAATGAGGGATGCTTAATTTTACGTAATTATATATTTCTTGATCATCTTCCATTATTATTTCCTATGGCTCCCCTCCAACCATGAATGATTAAAATGTGTAATGAATGTGCCAATCTAGTTGTCTAAAATCTTATTGACTTACTTATGTGTCATCTTTCTAAAAAGAAGATTAACTAAGGTAATTTAAAGTGGTACGATTAGGAAAAGGTAAAAGATCTTGTGTATTATTTGATCATTTTCCTGGCAACACAGTAATACTTTTGAATCAATTTTTCTTACTAAAAATTAAACCTCACTATGAAGAAAAATGTAAGGGGGTATGAGAAAATATTGAGAATGCCAAAGTGGGACTCTCTTAATATATGATTGATTTGAATAAAAAAAAAAAGTGCATGTGTTCTGATCTAATTATTAATAATCAGTAATCAGTATGTTTTATAGTATATCTCAAATATTCAATAGGATGTAAAATTGTTGCGACATGTATTATCTGTATGATGTGATTGGTTTGAAAATAGCAAAAGGGGAATAATTATTGTTGGTATTTGTATAATTAATATAATATTATGATTTGTATATAAATATAAAAAGAGATCAGAGGGTCTCAAAGGCCGAGCACAGGTCAAAGGAAGGACGCTTTAATTCTTCAGACAAAAGGAAAATTAAGGAGACAGAACAAAACCAAAACCTTCTTTTTCTTTCTTTCTTTCTCTACCCAAAATTTTCAAGCTTCTCGGCCGCTGACTGATCAATCTCGCTCAACAAAACCTAACAAACTGTATATATTAACTGGCCACAAAATTAATAGAAATATTTACATATATATAACAAAATTTTAAATTCTACCAAATGAGATTTTGTTTTGTACAAGTGGTTCACTGATGAGTTGCATATATAAGTTGCAGGTTGAGGTAATTTCACTTTAGCACTTAATGAAAA

mRNA sequence

ATGCCTGGCTCCCTGTATGCCATTTGTAGAGCGCTCACCGTCATACCCGATGGCCTCCGCGCATGGCGTATGAGGAGCCAAGCATATCCATGTCTATATTTCCTATTATATATATATCTAACCCTAATTTCAAAGGCTGCTGGAAAAAGGGAAGAAGAAAAACCCAAACTTCAAACAGTTCATCTCCATTTCTCAATATATTTTACAATGTATTTCACTCAAGAGAAAGAATATCACAGACTCACAGACAATAAATATCAAAAGGAGTGCCCAATCGACCGAAGATCTGATGAGTTTAATTCTGATCGTGCGGTGATGCGTGTTCGAGAAGAGGGGAGTATCATAGATCTGACCTCAGGGGATCCCAAATAG

Coding sequence (CDS)

ATGCCTGGCTCCCTGTATGCCATTTGTAGAGCGCTCACCGTCATACCCGATGGCCTCCGCGCATGGCGTATGAGGAGCCAAGCATATCCATGTCTATATTTCCTATTATATATATATCTAACCCTAATTTCAAAGGCTGCTGGAAAAAGGGAAGAAGAAAAACCCAAACTTCAAACAGTTCATCTCCATTTCTCAATATATTTTACAATGTATTTCACTCAAGAGAAAGAATATCACAGACTCACAGACAATAAATATCAAAAGGAGTGCCCAATCGACCGAAGATCTGATGAGTTTAATTCTGATCGTGCGGTGATGCGTGTTCGAGAAGAGGGGAGTATCATAGATCTGACCTCAGGGGATCCCAAATAG

Protein sequence

MPGSLYAICRALTVIPDGLRAWRMRSQAYPCLYFLLYIYLTLISKAAGKREEEKPKLQTVHLHFSIYFTMYFTQEKEYHRLTDNKYQKECPIDRRSDEFNSDRAVMRVREEGSIIDLTSGDPK
Homology
[Close]
BLAST of CsaV3_6G036350.1 vs. NCBI nr
Match: KGN47814.1 (hypothetical protein Csa_6G404290 [Cucumis sativus])

HSP 1 Score: 248.1 bits (632), Expect = 1.6e-62
Identity = 122/129 (94.57%), Postives = 123/129 (95.35%), Query Frame = 0 

Query: 1   MPGSLYAICRALTVIPDGLRAWRMRSQAYPCLYFLLYIYLTLISKAAGKREEEKPKLQTV 60
           MPGSLYAICRALTVIPDGLRAWRMRSQAYPCLYFLLYIYLTLISKAAGKREEEKPKLQTV
Sbjct: 1   MPGSLYAICRALTVIPDGLRAWRMRSQAYPCLYFLLYIYLTLISKAAGKREEEKPKLQTV 60

Query: 61  HLHFSIYFTMYFTQEKEYHRLTDN------KYQKECPIDRRSDEFNSDRAVMRVREEGSI 120
           HLHFSIYFTMYFTQEKEYHRLTDN      +YQKECPIDRRSDEFNSDRAVMRVREEGSI
Sbjct: 61  HLHFSIYFTMYFTQEKEYHRLTDNSTPFFLEYQKECPIDRRSDEFNSDRAVMRVREEGSI 120

Query: 121 IDLTSGDPK 124
           IDLTSGDPK
Sbjct: 121 IDLTSGDPK 129

[Close]
BLAST of CsaV3_6G036350.1 vs. TrEMBL
Match: tr|A0A0A0KG30|A0A0A0KG30_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G404290 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 1.1e-62
Identity = 122/129 (94.57%), Postives = 123/129 (95.35%), Query Frame = 0 

Query: 1   MPGSLYAICRALTVIPDGLRAWRMRSQAYPCLYFLLYIYLTLISKAAGKREEEKPKLQTV 60
           MPGSLYAICRALTVIPDGLRAWRMRSQAYPCLYFLLYIYLTLISKAAGKREEEKPKLQTV
Sbjct: 1   MPGSLYAICRALTVIPDGLRAWRMRSQAYPCLYFLLYIYLTLISKAAGKREEEKPKLQTV 60

Query: 61  HLHFSIYFTMYFTQEKEYHRLTDN------KYQKECPIDRRSDEFNSDRAVMRVREEGSI 120
           HLHFSIYFTMYFTQEKEYHRLTDN      +YQKECPIDRRSDEFNSDRAVMRVREEGSI
Sbjct: 61  HLHFSIYFTMYFTQEKEYHRLTDNSTPFFLEYQKECPIDRRSDEFNSDRAVMRVREEGSI 120

Query: 121 IDLTSGDPK 124
           IDLTSGDPK
Sbjct: 121 IDLTSGDPK 129

The following BLAST results are available for this feature:
BLAST of CsaV3_6G036350.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47814.11.6e-6294.57hypothetical protein Csa_6G404290 [Cucumis sativus][more]
BLAST of CsaV3_6G036350.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G036350.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G036350.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KG30|A0A0A0KG30_CUCSA1.1e-6294.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G404290 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_6G036350CsaV3_6G036350gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_6G036350.1CsaV3_6G036350.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_6G036350.1.exon1CsaV3_6G036350.1.exon1exon
CsaV3_6G036350.1.exon2CsaV3_6G036350.1.exon2exon
CsaV3_6G036350.1.exon3CsaV3_6G036350.1.exon3exon
CsaV3_6G036350.1.exon4CsaV3_6G036350.1.exon4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_6G036350.1.cds1CsaV3_6G036350.1.cds1CDS
CsaV3_6G036350.1.cds2CsaV3_6G036350.1.cds2CDS
CsaV3_6G036350.1.cds3CsaV3_6G036350.1.cds3CDS
CsaV3_6G036350.1.cds4CsaV3_6G036350.1.cds4CDS