CsaV3_2G033010 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.TTTGACTTTCAACGAATATCCTCATGTCCCAACTCCGTTCTTATCACACTTCTTCTCTCACCACCACTAAAAATGCCAAAGCAAATCCATGAGATCAAAGATTTTCTTCTCACTGCAAGAAGAAAGGATGCCCGCTCGGTCAAAATCAAGAGGAGGAAAGATGTAGTGAAGTTTAAG TTTGACTTTCAACGAATATCCTCATGTCCCAACTCCGTTCTTATCACACTTCTTCTCTCACCACCACTAAAAATGCCAAAGCAAATCCATGAGATCAAAGATTTTCTTCTCACTGCAAGAAGAAAGGATGCCCGCTCGGTCAAAATCAAGAGGAGGAAAGATGTAGTGAAGTTTAAG TTTGACTTTCAACGAATATCCTCATGTCCCAACTCCGTTCTTATCACACTTCTTCTCTCACCACCACTAAAAATGCCAAAGCAAATCCATGAGATCAAAGATTTTCTTCTCACTGCAAGAAGAAAGGATGCCCGCTCGGTCAAAATCAAGAGGAGGAAAGATGTAGTGAAGTTTAAG FDFQRISSCPNSVLITLLLSPPLKMPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK
BLAST of CsaV3_2G033010 vs. NCBI nr
Match: XP_023745785.1 (60S ribosomal protein L38-like [Lactuca sativa]) HSP 1 Score: 74.3 bits (181), Expect = 1.5e-10 Identity = 38/40 (95.00%), Postives = 38/40 (95.00%), Query Frame = 0
BLAST of CsaV3_2G033010 vs. NCBI nr
Match: XP_004957362.2 (60S ribosomal protein L38 [Setaria italica] >RCV12511.1 hypothetical protein SETIT_2G274700v2 [Setaria italica]) HSP 1 Score: 69.7 bits (169), Expect = 3.7e-09 Identity = 37/40 (92.50%), Postives = 37/40 (92.50%), Query Frame = 0
BLAST of CsaV3_2G033010 vs. NCBI nr
Match: PVH64677.1 (hypothetical protein PAHAL_2G331900, partial [Panicum hallii]) HSP 1 Score: 69.7 bits (169), Expect = 3.7e-09 Identity = 37/40 (92.50%), Postives = 37/40 (92.50%), Query Frame = 0
BLAST of CsaV3_2G033010 vs. NCBI nr
Match: PNS94822.1 (hypothetical protein POPTR_017G020000v3 [Populus trichocarpa]) HSP 1 Score: 68.9 bits (167), Expect = 6.4e-09 Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 0
BLAST of CsaV3_2G033010 vs. NCBI nr
Match: KGN63051.1 (hypothetical protein Csa_2G393180 [Cucumis sativus]) HSP 1 Score: 68.2 bits (165), Expect = 1.1e-08 Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0
BLAST of CsaV3_2G033010 vs. TAIR10
Match: AT2G43460.1 (Ribosomal L38e protein family) HSP 1 Score: 65.5 bits (158), Expect = 1.3e-11 Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0
BLAST of CsaV3_2G033010 vs. TAIR10
Match: AT3G59540.1 (Ribosomal L38e protein family) HSP 1 Score: 65.5 bits (158), Expect = 1.3e-11 Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0
BLAST of CsaV3_2G033010 vs. Swiss-Prot
Match: sp|O22860|RL38_ARATH (60S ribosomal protein L38 OS=Arabidopsis thaliana OX=3702 GN=RPL38A PE=3 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 2.3e-10 Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 0
BLAST of CsaV3_2G033010 vs. Swiss-Prot
Match: sp|P46291|RL38_SOLLC (60S ribosomal protein L38 OS=Solanum lycopersicum OX=4081 GN=RPL38 PE=3 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 1.5e-09 Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 0
BLAST of CsaV3_2G033010 vs. Swiss-Prot
Match: sp|Q95V84|RL38_BRABE (60S ribosomal protein L38 OS=Branchiostoma belcheri OX=7741 GN=RPL38 PE=3 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 4.4e-09 Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0
BLAST of CsaV3_2G033010 vs. Swiss-Prot
Match: sp|Q32PB9|RL38_BOVIN (60S ribosomal protein L38 OS=Bos taurus OX=9913 GN=RPL38 PE=3 SV=4) HSP 1 Score: 55.5 bits (132), Expect = 2.4e-07 Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 0
BLAST of CsaV3_2G033010 vs. Swiss-Prot
Match: sp|P63173|RL38_HUMAN (60S ribosomal protein L38 OS=Homo sapiens OX=9606 GN=RPL38 PE=1 SV=2) HSP 1 Score: 55.5 bits (132), Expect = 2.4e-07 Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 0
BLAST of CsaV3_2G033010 vs. TrEMBL
Match: tr|M0RVN2|M0RVN2_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=3 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 2.2e-10 Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 0
BLAST of CsaV3_2G033010 vs. TrEMBL
Match: tr|K3ZYF6|K3ZYF6_SETIT (Uncharacterized protein OS=Setaria italica OX=4555 GN=LOC101764670 PE=3 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 2.5e-09 Identity = 37/40 (92.50%), Postives = 37/40 (92.50%), Query Frame = 0
BLAST of CsaV3_2G033010 vs. TrEMBL
Match: tr|A0A2T8KR51|A0A2T8KR51_9POAL (Uncharacterized protein (Fragment) OS=Panicum hallii OX=206008 GN=PAHAL_2G331900 PE=4 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 2.5e-09 Identity = 37/40 (92.50%), Postives = 37/40 (92.50%), Query Frame = 0
BLAST of CsaV3_2G033010 vs. TrEMBL
Match: tr|A0A2K1X213|A0A2K1X213_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_017G020000v3 PE=3 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 4.2e-09 Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 0
BLAST of CsaV3_2G033010 vs. TrEMBL
Match: tr|M0RFA2|M0RFA2_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=3 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 4.2e-09 Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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