MELO3C023297.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C023297.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionChloride channel protein
Locationchr11 : 1045251 .. 1045496 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTATGTGCGTCATCATGGTTGAAATTTCAAACAATTTGAAAATTTTACCTCTCATCATGCTTGTACTTCTGATGTCCAAGGTAAGTTAACAAATTGAAAATTGAAGTTTTAACCGTTCAACAAGTTTATTTCCACGTGAGAGTGGGTTATGTATATAATCACTTCAGGCTGTTGGTGATGCCTTTAATGAAGGCCTGTATGAAGAGCAAGCCCAATTGAAGGGTATTCCATTACTGGAATGA

mRNA sequence

ATGGGTATGTGCGTCATCATGGTTGAAATTTCAAACAATTTGAAAATTTTACCTCTCATCATGCTTGTACTTCTGATGTCCAAGGCTGTTGGTGATGCCTTTAATGAAGGCCTGTATGAAGAGCAAGCCCAATTGAAGGGTATTCCATTACTGGAATGA

Coding sequence (CDS)

ATGGGTATGTGCGTCATCATGGTTGAAATTTCAAACAATTTGAAAATTTTACCTCTCATCATGCTTGTACTTCTGATGTCCAAGGCTGTTGGTGATGCCTTTAATGAAGGCCTGTATGAAGAGCAAGCCCAATTGAAGGGTATTCCATTACTGGAATGA

Protein sequence

MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE
Homology
[Close]
BLAST of MELO3C023297.2 vs. NCBI nr
Match: KGN48017.1 (hypothetical protein Csa_6G425060 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 4.8e-16
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVIMVEISNNLK LPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE
Sbjct: 522 VSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 573

[Close]
BLAST of MELO3C023297.2 vs. NCBI nr
Match: XP_008449563.1 (PREDICTED: chloride channel protein CLC-d [Cucumis melo])

HSP 1 Score: 92.4 bits (228), Expect = 4.8e-16
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVIMVEISNNLK LPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE
Sbjct: 522 VSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 573

[Close]
BLAST of MELO3C023297.2 vs. NCBI nr
Match: XP_011657577.1 (PREDICTED: chloride channel protein CLC-d [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 4.8e-16
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVIMVEISNNLK LPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE
Sbjct: 522 VSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 573

[Close]
BLAST of MELO3C023297.2 vs. NCBI nr
Match: XP_022959118.1 (chloride channel protein CLC-d isoform X2 [Cucurbita moschata])

HSP 1 Score: 92.4 bits (228), Expect = 4.8e-16
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVIMVEISNNLK LPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE
Sbjct: 522 VSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 573

[Close]
BLAST of MELO3C023297.2 vs. NCBI nr
Match: XP_022959117.1 (chloride channel protein CLC-d isoform X1 [Cucurbita moschata])

HSP 1 Score: 92.4 bits (228), Expect = 4.8e-16
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVIMVEISNNLK LPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE
Sbjct: 530 VSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 581

[Close]
BLAST of MELO3C023297.2 vs. TAIR10
Match: AT5G26240.1 (chloride channel D)

HSP 1 Score: 86.3 bits (212), Expect = 6.2e-18
Identity = 44/52 (84.62%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVIMVEI+NNLK+LPLIMLVLL+SKAVGDAFNEGLYE QA+LKGIPLLE
Sbjct: 524 VSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNEGLYEVQARLKGIPLLE 575

[Close]
BLAST of MELO3C023297.2 vs. TAIR10
Match: AT5G49890.1 (chloride channel C)

HSP 1 Score: 62.0 bits (149), Expect = 1.2e-10
Identity = 27/52 (51.92%), Postives = 42/52 (80.77%), Query Frame = 0 

Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVI++E++NNL +LPL+MLVLL+SK V D FN G+Y++   +KG+P +E
Sbjct: 536 VSLCVILLELTNNLLMLPLVMLVLLISKTVADCFNRGVYDQIVTMKGLPYME 587

[Close]
BLAST of MELO3C023297.2 vs. TAIR10
Match: AT3G27170.1 (chloride channel B)

HSP 1 Score: 57.8 bits (138), Expect = 2.4e-09
Identity = 26/52 (50.00%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVI +E++NNL +LP+ M+VLL++K VGD+FN  +Y+    LKG+P LE
Sbjct: 525 VSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYDIILHLKGLPFLE 576

[Close]
BLAST of MELO3C023297.2 vs. TAIR10
Match: AT5G40890.1 (chloride channel A)

HSP 1 Score: 57.4 bits (137), Expect = 3.1e-09
Identity = 27/52 (51.92%), Postives = 39/52 (75.00%), Query Frame = 0 

Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVI +E++NNL +LP+ M VLL++K VGD+FN  +YE    LKG+P LE
Sbjct: 526 VSLCVIFLELTNNLLLLPITMFVLLIAKTVGDSFNLSIYEIILHLKGLPFLE 577

[Close]
BLAST of MELO3C023297.2 vs. Swiss-Prot
Match: sp|P92943|CLCD_ARATH (Chloride channel protein CLC-d OS=Arabidopsis thaliana OX=3702 GN=CLC-D PE=1 SV=2)

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-16
Identity = 44/52 (84.62%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVIMVEI+NNLK+LPLIMLVLL+SKAVGDAFNEGLYE QA+LKGIPLLE
Sbjct: 524 VSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNEGLYEVQARLKGIPLLE 575

[Close]
BLAST of MELO3C023297.2 vs. Swiss-Prot
Match: sp|Q96282|CLCC_ARATH (Chloride channel protein CLC-c OS=Arabidopsis thaliana OX=3702 GN=CLC-C PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.3e-09
Identity = 27/52 (51.92%), Postives = 42/52 (80.77%), Query Frame = 0 

Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVI++E++NNL +LPL+MLVLL+SK V D FN G+Y++   +KG+P +E
Sbjct: 536 VSLCVILLELTNNLLMLPLVMLVLLISKTVADCFNRGVYDQIVTMKGLPYME 587

[Close]
BLAST of MELO3C023297.2 vs. Swiss-Prot
Match: sp|P92942|CLCB_ARATH (Chloride channel protein CLC-b OS=Arabidopsis thaliana OX=3702 GN=CLC-B PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.3e-08
Identity = 26/52 (50.00%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVI +E++NNL +LP+ M+VLL++K VGD+FN  +Y+    LKG+P LE
Sbjct: 525 VSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYDIILHLKGLPFLE 576

[Close]
BLAST of MELO3C023297.2 vs. Swiss-Prot
Match: sp|P92941|CLCA_ARATH (Chloride channel protein CLC-a OS=Arabidopsis thaliana OX=3702 GN=CLC-A PE=1 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 5.6e-08
Identity = 27/52 (51.92%), Postives = 39/52 (75.00%), Query Frame = 0 

Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVI +E++NNL +LP+ M VLL++K VGD+FN  +YE    LKG+P LE
Sbjct: 526 VSLCVIFLELTNNLLLLPITMFVLLIAKTVGDSFNLSIYEIILHLKGLPFLE 577

[Close]
BLAST of MELO3C023297.2 vs. TrEMBL
Match: tr|A0A1S3BMB3|A0A1S3BMB3_CUCME (Chloride channel protein OS=Cucumis melo OX=3656 GN=LOC103491408 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.1e-16
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVIMVEISNNLK LPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE
Sbjct: 522 VSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 573

[Close]
BLAST of MELO3C023297.2 vs. TrEMBL
Match: tr|A0A0A0KI42|A0A0A0KI42_CUCSA (Chloride channel protein OS=Cucumis sativus OX=3659 GN=Csa_6G425060 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.1e-16
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVIMVEISNNLK LPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE
Sbjct: 522 VSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 573

[Close]
BLAST of MELO3C023297.2 vs. TrEMBL
Match: tr|A0A2N9H2I9|A0A2N9H2I9_FAGSY (Chloride channel protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS36619 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.7e-15
Identity = 45/52 (86.54%), Postives = 51/52 (98.08%), Query Frame = 0 

Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVIMVEI+NNLK+LPLIMLVLL+SKAVGDAFNEGLYEEQAQL+GIPLLE
Sbjct: 589 VSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNEGLYEEQAQLRGIPLLE 640

[Close]
BLAST of MELO3C023297.2 vs. TrEMBL
Match: tr|A0A2P4LVL3|A0A2P4LVL3_QUESU (L-ascorbate oxidase OS=Quercus suber OX=58331 GN=CFP56_42428 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.7e-15
Identity = 45/52 (86.54%), Postives = 51/52 (98.08%), Query Frame = 0 

Query: 1    MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
            + +CVIMVEI+NNLK+LPLIMLVLL+SKAVGDAFNEGLYEEQAQL+GIPLLE
Sbjct: 1120 VSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNEGLYEEQAQLRGIPLLE 1171

[Close]
BLAST of MELO3C023297.2 vs. TrEMBL
Match: tr|A0A2P4LW82|A0A2P4LW82_QUESU (Chloride channel protein clc-d OS=Quercus suber OX=58331 GN=CFP56_42428 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.7e-15
Identity = 45/52 (86.54%), Postives = 51/52 (98.08%), Query Frame = 0 

Query: 1    MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
            + +CVIMVEI+NNLK+LPLIMLVLL+SKAVGDAFNEGLYEEQAQL+GIPLLE
Sbjct: 1120 VSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNEGLYEEQAQLRGIPLLE 1171

The following BLAST results are available for this feature:
BLAST of MELO3C023297.2 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN48017.14.8e-1692.31hypothetical protein Csa_6G425060 [Cucumis sativus][more]
XP_008449563.14.8e-1692.31PREDICTED: chloride channel protein CLC-d [Cucumis melo][more]
XP_011657577.14.8e-1692.31PREDICTED: chloride channel protein CLC-d [Cucumis sativus][more]
XP_022959118.14.8e-1692.31chloride channel protein CLC-d isoform X2 [Cucurbita moschata][more]
XP_022959117.14.8e-1692.31chloride channel protein CLC-d isoform X1 [Cucurbita moschata][more]
BLAST of MELO3C023297.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G26240.16.2e-1884.62chloride channel D[more]
AT5G49890.11.2e-1051.92chloride channel C[more]
AT3G27170.12.4e-0950.00chloride channel B[more]
AT5G40890.13.1e-0951.92chloride channel A[more]
BLAST of MELO3C023297.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P92943|CLCD_ARATH1.1e-1684.62Chloride channel protein CLC-d OS=Arabidopsis thaliana OX=3702 GN=CLC-D PE=1 SV=... [more]
sp|Q96282|CLCC_ARATH2.3e-0951.92Chloride channel protein CLC-c OS=Arabidopsis thaliana OX=3702 GN=CLC-C PE=1 SV=... [more]
sp|P92942|CLCB_ARATH4.3e-0850.00Chloride channel protein CLC-b OS=Arabidopsis thaliana OX=3702 GN=CLC-B PE=1 SV=... [more]
sp|P92941|CLCA_ARATH5.6e-0851.92Chloride channel protein CLC-a OS=Arabidopsis thaliana OX=3702 GN=CLC-A PE=1 SV=... [more]
BLAST of MELO3C023297.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BMB3|A0A1S3BMB3_CUCME3.1e-1692.31Chloride channel protein OS=Cucumis melo OX=3656 GN=LOC103491408 PE=3 SV=1[more]
tr|A0A0A0KI42|A0A0A0KI42_CUCSA3.1e-1692.31Chloride channel protein OS=Cucumis sativus OX=3659 GN=Csa_6G425060 PE=3 SV=1[more]
tr|A0A2N9H2I9|A0A2N9H2I9_FAGSY2.7e-1586.54Chloride channel protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS36619 PE=3 SV=1[more]
tr|A0A2P4LVL3|A0A2P4LVL3_QUESU2.7e-1586.54L-ascorbate oxidase OS=Quercus suber OX=58331 GN=CFP56_42428 PE=3 SV=1[more]
tr|A0A2P4LW82|A0A2P4LW82_QUESU2.7e-1586.54Chloride channel protein clc-d OS=Quercus suber OX=58331 GN=CFP56_42428 PE=3 SV=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR014743Cl-channel_core
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006821 chloride transport
biological_process GO:0034220 ion transmembrane transport
biological_process GO:0006811 ion transport
biological_process GO:1903959 regulation of anion transmembrane transport
biological_process GO:0055085 transmembrane transport
biological_process GO:0006810 transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005247 voltage-gated chloride channel activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023297.2.1MELO3C023297.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014743Chloride channel, coreGENE3DG3DSA:1.10.3080.10coord: 1..52
e-value: 1.1E-10
score: 43.0
IPR014743Chloride channel, coreSUPERFAMILYSSF81340Clc chloride channelcoord: 2..51
NoneNo IPR availablePANTHERPTHR11689CHLORIDE CHANNELcoord: 2..52
NoneNo IPR availablePANTHERPTHR11689:SF105CHLORIDE CHANNEL PROTEIN CLC-Ccoord: 2..52

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C023297.2Cucumber (Gy14) v2cgybmedB074
MELO3C023297.2Cucumber (Gy14) v1cgymedB148
MELO3C023297.2Cucurbita maxima (Rimu)cmamedB580
MELO3C023297.2Cucurbita maxima (Rimu)cmamedB628
MELO3C023297.2Cucurbita moschata (Rifu)cmomedB568
MELO3C023297.2Cucurbita moschata (Rifu)cmomedB617
MELO3C023297.2Cucurbita pepo (Zucchini)cpemedB253
MELO3C023297.2Cucurbita pepo (Zucchini)cpemedB293
MELO3C023297.2Wild cucumber (PI 183967)cpimedB081
MELO3C023297.2Cucurbita pepo (Zucchini)cpemedB786
MELO3C023297.2Wild cucumber (PI 183967)cpimedB263
MELO3C023297.2Cucumber (Chinese Long) v2cumedB081
MELO3C023297.2Cucumber (Chinese Long) v2cumedB263
MELO3C023297.2Melon (DHL92) v3.6.1medmedB041
MELO3C023297.2Bottle gourd (USVL1VR-Ls)lsimedB047
MELO3C023297.2Bottle gourd (USVL1VR-Ls)lsimedB090
MELO3C023297.2Bottle gourd (USVL1VR-Ls)lsimedB448
MELO3C023297.2Watermelon (Charleston Gray)medwcgB106
MELO3C023297.2Watermelon (Charleston Gray)medwcgB080
MELO3C023297.2Watermelon (97103) v1medwmB124
MELO3C023297.2Watermelon (97103) v1medwmB130
MELO3C023297.2Silver-seed gourdcarmedB0329
MELO3C023297.2Silver-seed gourdcarmedB0479
MELO3C023297.2Silver-seed gourdcarmedB0886
MELO3C023297.2Cucumber (Chinese Long) v3cucmedB089
MELO3C023297.2Cucumber (Chinese Long) v3cucmedB518
MELO3C023297.2Watermelon (97103) v2medwmbB082
MELO3C023297.2Watermelon (97103) v2medwmbB105
MELO3C023297.2Wax gourdmedwgoB112
MELO3C023297.2Wax gourdmedwgoB133