MELO3C009774.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C009774.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionPentatricopeptide repeat-containing family protein
Locationchr04 : 29422461 .. 29423837 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGTTTCTTGGAATGGTAAGATTGCTGCCTATGCTCATCATGGCCATGGCCACAAAGCAATTTGTTCATTTGATGAAATGCAGGCATTGGGATTTCGTCCTGATAATGTCACCTATATTGCATTGCTTTCCGCTTGTAGTCATGCCGTTAAGAGATAGGTCTATAAAACTAAGAGAAGATCATTTTACATGCCTGGTCGATCTTTTTGGTCGAGCCGGACGACTTCAAGAGGCATTTGATTTCATTAAGGGGCTTTCGGCATCTGGTTGGGCAGCTCCTCTTGCTGGATGTAATGTTCATGGTAGGGGTGAGTATGGTAGGCCGAAAAACCGAAACGACCGACCAAAATCGACTGAACTGAAGTAAGTGAAGGTGTCCTTTTCGGTTTTGTTGTAAAAAACCAACTTGTGGTCAGTCCGTTTGGGTTGGAAGGGCGAGACCCAACCGACCAAACTCTTTTTTTTCTCTCGCTTAGTTTATTCAAACATATGTATATATAAAAGTAATTTTTATTTTCAGGGTGAAGTGAATTTGCAATTAACTTTATTTATTTACTTTCTGAAAAATTAAAATTTATCAGACTTGTTAAATTCATTTTATATGTTTAAAAAATTTGCGGCATATTATCTATTTACTACATTGATTTTAGGGATTTTTTCAAAAATAGAAAAAATTAACAAACTATTTACCATCTAGGGAACAAAACCATCCAACAACAAAATTTACTACACTCAGATTTTTTTTACAAATTGTAAATATTTTGTGAAATGTTATATTTTTTTATAATTTTCCTTGATTTTATTTTTGTAGTATATATACGATCTGATTTTTATGTTTTTACTAAATAAGGAGAGAGTAGAAAGCAAAGTGAAGTAAGAAGAAAAAAAAACCAACCAAAACCGATCCCGACCACAGTCGGTCGGTTTTGTTGTTAACGGCGGCCAGCATCGGGTCAACAATTTCCATAGGGAATTGTGGTCAGTTGGAGTCAGTTTGGCCGGAAAACTGACTCCCGACCATTGATCACCCCTGGTTCGTGGGCATATAGATCTAGGTTAGTCAAAGGCTGAAAAACTTTTAGAAACAGAGCCAGAGAATGAAGGAACCTTTTTGGTGTTATCTAACATATATGCTTCAACTGGAAAATGGAGAGAAGCTGCTAGAGTAAGGATGAAAATGAAGGACAAAGGATTGAAGAAGCAGCCTGGTTGCAGTTGGATAGACGTTGGAAATACAGTGCATGCATTCGTAGTGGATGACAATTCTCATTGCGAATTTAAAAATACTTACCTTTTACTTCACGATCTACATACGAAAATGAAGAAGATTGGTCATACATTGTATGAAGATTTAACTATGGATTTCAATTTATGA

mRNA sequence

ATGTGGTTTCTTGGAATGGTAAGATTGCTGCCTATGCTCATCATGGCCATGGCCACAAAGCAATTTGTTCATTTGATGAAATGCAGGCATTGGGATTTCGTCCTGATAATGTCACCTATATTGCATTGCTTTCCGCTTGTAGTCATGCCGTTAAGAGATAGGTCTATAAAACTAAGAGAAGATCATTTTACATGCCTGGTCGATCTTTTTGGTCGAGCCGGACGACTTCAAGAGGCATTTGATTTCATTAAGGGGCTTTCGGCATCTGGTTGGGCAGCTCCTCTTGCTGGATGTAATGTTCATGGTAGGGAAACAGAGCCAGAGAATGAAGGAACCTTTTTGGTGTTATCTAACATATATGCTTCAACTGGAAAATGGAGAGAAGCTGCTAGAGTAAGGATGAAAATGAAGGACAAAGGATTGAAGAAGCAGCCTGGTTGCAGTTGGATAGACGTTGGAAATACAGTGCATGCATTCGTAGTGGATGACAATTCTCATTGCGAATTTAAAAATACTTACCTTTTACTTCACGATCTACATACGAAAATGAAGAAGATTGGTCATACATTGTATGAAGATTTAACTATGGATTTCAATTTATGA

Coding sequence (CDS)

ATGTGGTTTCTTGGAATGGTAAGATTGCTGCCTATGCTCATCATGGCCATGGCCACAAAGCAATTTGTTCATTTGATGAAATGCAGGCATTGGGATTTCGTCCTGATAATGTCACCTATATTGCATTGCTTTCCGCTTGTAGTCATGCCGTTAAGAGATAGGTCTATAAAACTAAGAGAAGATCATTTTACATGCCTGGTCGATCTTTTTGGTCGAGCCGGACGACTTCAAGAGGCATTTGATTTCATTAAGGGGCTTTCGGCATCTGGTTGGGCAGCTCCTCTTGCTGGATGTAATGTTCATGGTAGGGAAACAGAGCCAGAGAATGAAGGAACCTTTTTGGTGTTATCTAACATATATGCTTCAACTGGAAAATGGAGAGAAGCTGCTAGAGTAAGGATGAAAATGAAGGACAAAGGATTGAAGAAGCAGCCTGGTTGCAGTTGGATAGACGTTGGAAATACAGTGCATGCATTCGTAGTGGATGACAATTCTCATTGCGAATTTAAAAATACTTACCTTTTACTTCACGATCTACATACGAAAATGAAGAAGATTGGTCATACATTGTATGAAGATTTAACTATGGATTTCAATTTATGA

Protein sequence

MWFLGMVRLLPMLIMAMATKQFVHLMKCRHWDFVLIMSPILHCFPLVVMPLRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLSASGWAAPLAGCNVHGRETEPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWIDVGNTVHAFVVDDNSHCEFKNTYLLLHDLHTKMKKIGHTLYEDLTMDFNL
Homology
[Close]
BLAST of MELO3C009774.2 vs. NCBI nr
Match: KGN59463.1 (hypothetical protein Csa_3G822150 [Cucumis sativus])

HSP 1 Score: 271.9 bits (694), Expect = 1.7e-69
Identity = 136/166 (81.93%), Postives = 141/166 (84.94%), Query Frame = 0 

Query: 51  LRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGL----SASGWAAPLAGCNVHGR--- 110
           +RDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGL    SAS WAA LAGCNVHG    
Sbjct: 481 VRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHGHIDL 540

Query: 111 ---------ETEPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWIDVGN 170
                    ETEPEN GT+LVLSNIYASTGKWREAA VRMKMKDKGLKKQPGCSWI+VGN
Sbjct: 541 GKLTAEKLLETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWIEVGN 600

Query: 171 TVHAFVVDDNSHCEFKNTYLLLHDLHTKMKKIGHTLYEDLTMDFNL 201
           TVH FVV DNSH EF+N YLLLHDLHTKMKKIGHTLYEDLT+DFNL
Sbjct: 601 TVHVFVVGDNSHREFENIYLLLHDLHTKMKKIGHTLYEDLTIDFNL 646

[Close]
BLAST of MELO3C009774.2 vs. NCBI nr
Match: XP_011652860.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Cucumis sativus])

HSP 1 Score: 271.9 bits (694), Expect = 1.7e-69
Identity = 136/166 (81.93%), Postives = 141/166 (84.94%), Query Frame = 0 

Query: 51  LRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGL----SASGWAAPLAGCNVHGR--- 110
           +RDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGL    SAS WAA LAGCNVHG    
Sbjct: 443 VRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHGHIDL 502

Query: 111 ---------ETEPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWIDVGN 170
                    ETEPEN GT+LVLSNIYASTGKWREAA VRMKMKDKGLKKQPGCSWI+VGN
Sbjct: 503 GKLTAEKLLETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWIEVGN 562

Query: 171 TVHAFVVDDNSHCEFKNTYLLLHDLHTKMKKIGHTLYEDLTMDFNL 201
           TVH FVV DNSH EF+N YLLLHDLHTKMKKIGHTLYEDLT+DFNL
Sbjct: 563 TVHVFVVGDNSHREFENIYLLLHDLHTKMKKIGHTLYEDLTIDFNL 608

[Close]
BLAST of MELO3C009774.2 vs. NCBI nr
Match: XP_008443284.2 (PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Cucumis melo])

HSP 1 Score: 265.4 bits (677), Expect = 1.6e-67
Identity = 134/166 (80.72%), Postives = 137/166 (82.53%), Query Frame = 0 

Query: 51  LRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGL----SASGWAAPLAGCNVHGR--- 110
           LRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFI GL    S S WAA LAGCNVHG    
Sbjct: 481 LRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFINGLEVKPSTSVWAALLAGCNVHGHIDL 540

Query: 111 ---------ETEPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWIDVGN 170
                    ETEPEN GTFLVLSNIYASTGKWREAA VRMKMKDKGLKKQPGCSWI+VGN
Sbjct: 541 GKLTAEKLLETEPENAGTFLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWIEVGN 600

Query: 171 TVHAFVVDDNSHCEFKNTYLLLHDLHTKMKKIGHTLYEDLTMDFNL 201
           TVH FVV DNS+ EF+N Y LLHDLHTKMKKIGH LYEDLTMDFNL
Sbjct: 601 TVHVFVVGDNSYREFENIYRLLHDLHTKMKKIGHILYEDLTMDFNL 646

[Close]
BLAST of MELO3C009774.2 vs. NCBI nr
Match: XP_022983729.1 (pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Cucurbita maxima])

HSP 1 Score: 262.3 bits (669), Expect = 1.3e-66
Identity = 128/166 (77.11%), Postives = 138/166 (83.13%), Query Frame = 0 

Query: 51  LRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGL----SASGWAAPLAGCNVHGR--- 110
           +RD SI LREDHFTCLVDLFGRAGRLQEAFDFIKGL    S+S WAA LAGCNVHG    
Sbjct: 481 VRDGSITLREDHFTCLVDLFGRAGRLQEAFDFIKGLEDKPSSSVWAALLAGCNVHGNIDL 540

Query: 111 ---------ETEPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWIDVGN 170
                    ETEPEN GTF++LSNIYASTGKWREAA+VR+KMKDKGLKKQPGCSWI+VGN
Sbjct: 541 GKLTAEKLLETEPENAGTFMLLSNIYASTGKWREAAKVRLKMKDKGLKKQPGCSWIEVGN 600

Query: 171 TVHAFVVDDNSHCEFKNTYLLLHDLHTKMKKIGHTLYEDLTMDFNL 201
            VH FVV DNSHC+F+N YLLLHDLH KMKKIGHTLYEDLT+D NL
Sbjct: 601 AVHVFVVGDNSHCQFENIYLLLHDLHMKMKKIGHTLYEDLTVDLNL 646

[Close]
BLAST of MELO3C009774.2 vs. NCBI nr
Match: XP_022935077.1 (pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Cucurbita moschata])

HSP 1 Score: 258.1 bits (658), Expect = 2.5e-65
Identity = 127/166 (76.51%), Postives = 136/166 (81.93%), Query Frame = 0 

Query: 51  LRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGL----SASGWAAPLAGCNVHGR--- 110
           +RD SI LREDHFTCLVDLFGRAGRLQEAFDFIKGL    S+S WAA LAGCNVHG    
Sbjct: 481 VRDGSITLREDHFTCLVDLFGRAGRLQEAFDFIKGLEDKPSSSVWAALLAGCNVHGNIDL 540

Query: 111 ---------ETEPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWIDVGN 170
                    ETEPEN GTF++LSNIYASTGKWREAA+VR+KMKDKGLKKQPGCSWI+V N
Sbjct: 541 GKLTAEKLLETEPENAGTFMLLSNIYASTGKWREAAKVRLKMKDKGLKKQPGCSWIEVDN 600

Query: 171 TVHAFVVDDNSHCEFKNTYLLLHDLHTKMKKIGHTLYEDLTMDFNL 201
            VH FVV DNSHC+ +N YLLLHDLH KMKKIGHTLYEDLTMD NL
Sbjct: 601 AVHVFVVGDNSHCQSENIYLLLHDLHMKMKKIGHTLYEDLTMDLNL 646

[Close]
BLAST of MELO3C009774.2 vs. TAIR10
Match: AT2G35030.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 147.9 bits (372), Expect = 6.7e-36
Identity = 76/151 (50.33%), Postives = 99/151 (65.56%), Query Frame = 0 

Query: 51  LRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIK----GLSASGWAAPLAGCNVHGR--- 110
           +RD S+ LRE+H+TCLVDL GRAGRL++  +FI      LS S + A L+ CNVH     
Sbjct: 461 VRDESLPLREEHYTCLVDLCGRAGRLKDVTNFINCDDARLSRSFYGAILSACNVHNEVSI 520

Query: 111 ---------ETEPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWIDVGN 170
                    ET  ++ GT++++SNIYA+ GK  EAA +RMKMK+KGLKKQPGCSW+ VG 
Sbjct: 521 AKEVVKKVLETGSDDAGTYVLMSNIYAANGKREEAAEMRMKMKEKGLKKQPGCSWVKVGK 580

Query: 171 TVHAFVVDDNSHCEFKNTYLLLHDLHTKMKK 186
             H FVV D SH +F+    +L DL  KM+K
Sbjct: 581 QNHLFVVGDKSHPQFEALDSILSDLRNKMRK 611

[Close]
BLAST of MELO3C009774.2 vs. TAIR10
Match: AT1G25360.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 122.9 bits (307), Expect = 2.3e-28
Identity = 59/144 (40.97%), Postives = 90/144 (62.50%), Query Frame = 0 

Query: 61  DHFTCLVDLFGRAGRLQEAFDFIKGL----SASGWAAPLAGCNVHGR------------E 120
           DH+  L+DL  R+G+  +A   I+ L    +A  W A L+GC VHG              
Sbjct: 555 DHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFG 614

Query: 121 TEPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWIDVGNTVHAFVVDDN 180
             PE++GT+++LSN++A+TG+W E ARVR  M+D+G+KK+  CSWI++   VH F+VDD 
Sbjct: 615 LIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDT 674

Query: 181 SHCEFKNTYLLLHDLHTKMKKIGH 189
           SH E +  Y+ L DL  +M+++G+
Sbjct: 675 SHPEAEAVYIYLQDLGKEMRRLGY 698

[Close]
BLAST of MELO3C009774.2 vs. TAIR10
Match: AT4G02750.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 121.3 bits (303), Expect = 6.7e-28
Identity = 59/153 (38.56%), Postives = 88/153 (57.52%), Query Frame = 0 

Query: 52  RDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGL----SASGWAAPLAGCNVHGR---- 111
           +D  +     H+ C+VDL GRAG L++A + +K +     A+ W   L    VHG     
Sbjct: 538 QDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELA 597

Query: 112 ET--------EPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWIDVGNT 171
           ET        EPEN G +++LSN+YAS+G+W +  ++R++M+DKG+KK PG SWI++ N 
Sbjct: 598 ETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNK 657

Query: 172 VHAFVVDDNSHCEFKNTYLLLHDLHTKMKKIGH 189
            H F V D  H E    +  L +L  +MKK G+
Sbjct: 658 THTFSVGDEFHPEKDEIFAFLEELDLRMKKAGY 690

[Close]
BLAST of MELO3C009774.2 vs. TAIR10
Match: AT1G20230.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-27
Identity = 61/156 (39.10%), Postives = 86/156 (55.13%), Query Frame = 0 

Query: 49  MPLRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGL----SASGWAAPLAGCNVHGR- 108
           M   +  IK R +H++C+V+L GRAG+LQEA+D IK +     +  W A L  C +    
Sbjct: 514 MMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNV 573

Query: 109 -----------ETEPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWIDV 168
                        EPEN GT+++LSNIYA+ G W E   +R KM+  GLKK PGCSWI V
Sbjct: 574 DLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQV 633

Query: 169 GNTVHAFVVDDNSHCEFKNTYLLLHDLHTKMKKIGH 189
            N V+  +  D SH +       + ++  +M+K GH
Sbjct: 634 KNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGH 669

[Close]
BLAST of MELO3C009774.2 vs. TAIR10
Match: AT2G36980.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 119.8 bits (299), Expect = 1.9e-27
Identity = 63/154 (40.91%), Postives = 86/154 (55.84%), Query Frame = 0 

Query: 51  LRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLSA--------SGWAAPLAGCNVH- 110
           ++D  I L  DH TC++D+FGR G L EA D     S+        S W   L  C+ H 
Sbjct: 465 VKDYRIPLEVDHVTCMIDMFGRGGHLAEAKDLATTYSSLVTDSSNNSSWETLLGACSTHW 524

Query: 111 ----GRE-------TEPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWI 170
               GRE        EP  E +F++LSN+Y STG+W+E   VR +M ++G+KK PGCSWI
Sbjct: 525 HTELGREVSKVLKIAEPSEEMSFVLLSNLYCSTGRWKEGEDVRREMVERGMKKTPGCSWI 584

Query: 171 DVGNTVHAFVVDDNSHCEFKNTYLLLHDLHTKMK 185
           +VGN V  FVV D+SH   +     L+ L  +M+
Sbjct: 585 EVGNQVSTFVVGDSSHPRLEELSETLNCLQHEMR 618

[Close]
BLAST of MELO3C009774.2 vs. Swiss-Prot
Match: sp|O64766|PP185_ARATH (Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E15 PE=2 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.2e-34
Identity = 76/151 (50.33%), Postives = 99/151 (65.56%), Query Frame = 0 

Query: 51  LRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIK----GLSASGWAAPLAGCNVHGR--- 110
           +RD S+ LRE+H+TCLVDL GRAGRL++  +FI      LS S + A L+ CNVH     
Sbjct: 461 VRDESLPLREEHYTCLVDLCGRAGRLKDVTNFINCDDARLSRSFYGAILSACNVHNEVSI 520

Query: 111 ---------ETEPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWIDVGN 170
                    ET  ++ GT++++SNIYA+ GK  EAA +RMKMK+KGLKKQPGCSW+ VG 
Sbjct: 521 AKEVVKKVLETGSDDAGTYVLMSNIYAANGKREEAAEMRMKMKEKGLKKQPGCSWVKVGK 580

Query: 171 TVHAFVVDDNSHCEFKNTYLLLHDLHTKMKK 186
             H FVV D SH +F+    +L DL  KM+K
Sbjct: 581 QNHLFVVGDKSHPQFEALDSILSDLRNKMRK 611

[Close]
BLAST of MELO3C009774.2 vs. Swiss-Prot
Match: sp|Q9FRI5|PPR57_ARATH (Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H74 PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.1e-27
Identity = 59/144 (40.97%), Postives = 90/144 (62.50%), Query Frame = 0 

Query: 61  DHFTCLVDLFGRAGRLQEAFDFIKGL----SASGWAAPLAGCNVHGR------------E 120
           DH+  L+DL  R+G+  +A   I+ L    +A  W A L+GC VHG              
Sbjct: 555 DHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFG 614

Query: 121 TEPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWIDVGNTVHAFVVDDN 180
             PE++GT+++LSN++A+TG+W E ARVR  M+D+G+KK+  CSWI++   VH F+VDD 
Sbjct: 615 LIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDT 674

Query: 181 SHCEFKNTYLLLHDLHTKMKKIGH 189
           SH E +  Y+ L DL  +M+++G+
Sbjct: 675 SHPEAEAVYIYLQDLGKEMRRLGY 698

[Close]
BLAST of MELO3C009774.2 vs. Swiss-Prot
Match: sp|Q9SY02|PP301_ARATH (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H24 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.2e-26
Identity = 59/153 (38.56%), Postives = 88/153 (57.52%), Query Frame = 0 

Query: 52  RDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGL----SASGWAAPLAGCNVHGR---- 111
           +D  +     H+ C+VDL GRAG L++A + +K +     A+ W   L    VHG     
Sbjct: 538 QDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELA 597

Query: 112 ET--------EPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWIDVGNT 171
           ET        EPEN G +++LSN+YAS+G+W +  ++R++M+DKG+KK PG SWI++ N 
Sbjct: 598 ETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNK 657

Query: 172 VHAFVVDDNSHCEFKNTYLLLHDLHTKMKKIGH 189
            H F V D  H E    +  L +L  +MKK G+
Sbjct: 658 THTFSVGDEFHPEKDEIFAFLEELDLRMKKAGY 690

[Close]
BLAST of MELO3C009774.2 vs. Swiss-Prot
Match: sp|Q9LNU6|PPR53_ARATH (Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H21 PE=2 SV=2)

HSP 1 Score: 120.6 bits (301), Expect = 2.1e-26
Identity = 61/156 (39.10%), Postives = 86/156 (55.13%), Query Frame = 0 

Query: 49  MPLRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGL----SASGWAAPLAGCNVHGR- 108
           M   +  IK R +H++C+V+L GRAG+LQEA+D IK +     +  W A L  C +    
Sbjct: 514 MMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNV 573

Query: 109 -----------ETEPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWIDV 168
                        EPEN GT+++LSNIYA+ G W E   +R KM+  GLKK PGCSWI V
Sbjct: 574 DLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQV 633

Query: 169 GNTVHAFVVDDNSHCEFKNTYLLLHDLHTKMKKIGH 189
            N V+  +  D SH +       + ++  +M+K GH
Sbjct: 634 KNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGH 669

[Close]
BLAST of MELO3C009774.2 vs. Swiss-Prot
Match: sp|Q9SJK9|PP189_ARATH (Pentatricopeptide repeat-containing protein At2g36980, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E73 PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.5e-26
Identity = 63/154 (40.91%), Postives = 86/154 (55.84%), Query Frame = 0 

Query: 51  LRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLSA--------SGWAAPLAGCNVH- 110
           ++D  I L  DH TC++D+FGR G L EA D     S+        S W   L  C+ H 
Sbjct: 465 VKDYRIPLEVDHVTCMIDMFGRGGHLAEAKDLATTYSSLVTDSSNNSSWETLLGACSTHW 524

Query: 111 ----GRE-------TEPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWI 170
               GRE        EP  E +F++LSN+Y STG+W+E   VR +M ++G+KK PGCSWI
Sbjct: 525 HTELGREVSKVLKIAEPSEEMSFVLLSNLYCSTGRWKEGEDVRREMVERGMKKTPGCSWI 584

Query: 171 DVGNTVHAFVVDDNSHCEFKNTYLLLHDLHTKMK 185
           +VGN V  FVV D+SH   +     L+ L  +M+
Sbjct: 585 EVGNQVSTFVVGDSSHPRLEELSETLNCLQHEMR 618

[Close]
BLAST of MELO3C009774.2 vs. TrEMBL
Match: tr|A0A0A0LCG2|A0A0A0LCG2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822150 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.1e-69
Identity = 136/166 (81.93%), Postives = 141/166 (84.94%), Query Frame = 0 

Query: 51  LRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGL----SASGWAAPLAGCNVHGR--- 110
           +RDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGL    SAS WAA LAGCNVHG    
Sbjct: 481 VRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHGHIDL 540

Query: 111 ---------ETEPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWIDVGN 170
                    ETEPEN GT+LVLSNIYASTGKWREAA VRMKMKDKGLKKQPGCSWI+VGN
Sbjct: 541 GKLTAEKLLETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWIEVGN 600

Query: 171 TVHAFVVDDNSHCEFKNTYLLLHDLHTKMKKIGHTLYEDLTMDFNL 201
           TVH FVV DNSH EF+N YLLLHDLHTKMKKIGHTLYEDLT+DFNL
Sbjct: 601 TVHVFVVGDNSHREFENIYLLLHDLHTKMKKIGHTLYEDLTIDFNL 646

[Close]
BLAST of MELO3C009774.2 vs. TrEMBL
Match: tr|A0A1S3B8F2|A0A1S3B8F2_CUCME (pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103486904 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.0e-67
Identity = 134/166 (80.72%), Postives = 137/166 (82.53%), Query Frame = 0 

Query: 51  LRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGL----SASGWAAPLAGCNVHGR--- 110
           LRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFI GL    S S WAA LAGCNVHG    
Sbjct: 481 LRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFINGLEVKPSTSVWAALLAGCNVHGHIDL 540

Query: 111 ---------ETEPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWIDVGN 170
                    ETEPEN GTFLVLSNIYASTGKWREAA VRMKMKDKGLKKQPGCSWI+VGN
Sbjct: 541 GKLTAEKLLETEPENAGTFLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWIEVGN 600

Query: 171 TVHAFVVDDNSHCEFKNTYLLLHDLHTKMKKIGHTLYEDLTMDFNL 201
           TVH FVV DNS+ EF+N Y LLHDLHTKMKKIGH LYEDLTMDFNL
Sbjct: 601 TVHVFVVGDNSYREFENIYRLLHDLHTKMKKIGHILYEDLTMDFNL 646

[Close]
BLAST of MELO3C009774.2 vs. TrEMBL
Match: tr|F6HLQ6|F6HLQ6_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_08s0007g05520 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.4e-48
Identity = 103/161 (63.98%), Postives = 114/161 (70.81%), Query Frame = 0 

Query: 53  DRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGL----SASGWAAPLAGCNVHGR----- 112
           DRSI +REDH+ CLVDL GRAGRL+EAF FI+ L    SA  W A LAGCNVH       
Sbjct: 484 DRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKIGK 543

Query: 113 -------ETEPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWIDVGNTV 172
                  E EPEN GT+L+LSNIYASTGKWREAARVR+KMKDKGLKKQPGCSWI+VGN V
Sbjct: 544 QAAKKLLEVEPENAGTYLLLSNIYASTGKWREAARVRLKMKDKGLKKQPGCSWIEVGNRV 603

Query: 173 HAFVVDDNSHCEFKNTYLLLHDLHTKMKKIGHTLYEDLTMD 198
           H FVV D SH + K  Y LL DLH+KMKK G+    D   D
Sbjct: 604 HVFVVGDKSHSQSKLIYSLLRDLHSKMKKAGYEPNNDFISD 644

[Close]
BLAST of MELO3C009774.2 vs. TrEMBL
Match: tr|M5VX02|M5VX02_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppb002215mg PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 3.2e-48
Identity = 99/163 (60.74%), Postives = 122/163 (74.85%), Query Frame = 0 

Query: 53  DRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGL----SASGWAAPLAGCNVHGR----- 112
           D SI++REDH+TCLVDL GRAGRL+EAF+ ++ L    SAS W A LAGCNVHG      
Sbjct: 470 DGSIQVREDHYTCLVDLCGRAGRLKEAFNVLEKLGTKISASVWGALLAGCNVHGNMDIGK 529

Query: 113 -------ETEPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWIDVGNTV 172
                  E EPE  GT+L+L NIYAS+GKWREAA++RMKMK+KGLKKQPGCSWI+VGN V
Sbjct: 530 LAAEKLLEGEPEKAGTYLLLCNIYASSGKWREAAKIRMKMKEKGLKKQPGCSWIEVGNKV 589

Query: 173 HAFVVDDNSHCEFKNTYLLLHDLHTKMKKIGHTLYEDLTMDFN 200
           H FVV D SH + +  Y L+++LH +MKKIG+  Y+DLT+D N
Sbjct: 590 HVFVVGDKSHYQSELIYSLIYNLHERMKKIGYIPYDDLTVDDN 632

[Close]
BLAST of MELO3C009774.2 vs. TrEMBL
Match: tr|A0A251N8Q3|A0A251N8Q3_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G042800 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 3.2e-48
Identity = 99/163 (60.74%), Postives = 122/163 (74.85%), Query Frame = 0 

Query: 53  DRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGL----SASGWAAPLAGCNVHGR----- 112
           D SI++REDH+TCLVDL GRAGRL+EAF+ ++ L    SAS W A LAGCNVHG      
Sbjct: 439 DGSIQVREDHYTCLVDLCGRAGRLKEAFNVLEKLGTKISASVWGALLAGCNVHGNMDIGK 498

Query: 113 -------ETEPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWIDVGNTV 172
                  E EPE  GT+L+L NIYAS+GKWREAA++RMKMK+KGLKKQPGCSWI+VGN V
Sbjct: 499 LAAEKLLEGEPEKAGTYLLLCNIYASSGKWREAAKIRMKMKEKGLKKQPGCSWIEVGNKV 558

Query: 173 HAFVVDDNSHCEFKNTYLLLHDLHTKMKKIGHTLYEDLTMDFN 200
           H FVV D SH + +  Y L+++LH +MKKIG+  Y+DLT+D N
Sbjct: 559 HVFVVGDKSHYQSELIYSLIYNLHERMKKIGYIPYDDLTVDDN 601

The following BLAST results are available for this feature:
BLAST of MELO3C009774.2 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN59463.11.7e-6981.93hypothetical protein Csa_3G822150 [Cucumis sativus][more]
XP_011652860.11.7e-6981.93PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial ... [more]
XP_008443284.21.6e-6780.72PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial ... [more]
XP_022983729.11.3e-6677.11pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Cucurbita ... [more]
XP_022935077.12.5e-6576.51pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Cucurbita ... [more]
BLAST of MELO3C009774.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G35030.16.7e-3650.33Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G25360.12.3e-2840.97Pentatricopeptide repeat (PPR) superfamily protein[more]
AT4G02750.16.7e-2838.56Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G20230.11.1e-2739.10Pentatricopeptide repeat (PPR) superfamily protein[more]
AT2G36980.11.9e-2740.91Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of MELO3C009774.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O64766|PP185_ARATH1.2e-3450.33Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidop... [more]
sp|Q9FRI5|PPR57_ARATH4.1e-2740.97Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana OX... [more]
sp|Q9SY02|PP301_ARATH1.2e-2638.56Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX... [more]
sp|Q9LNU6|PPR53_ARATH2.1e-2639.10Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana OX... [more]
sp|Q9SJK9|PP189_ARATH3.5e-2640.91Pentatricopeptide repeat-containing protein At2g36980, mitochondrial OS=Arabidop... [more]
BLAST of MELO3C009774.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LCG2|A0A0A0LCG2_CUCSA1.1e-6981.93Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822150 PE=4 SV=1[more]
tr|A0A1S3B8F2|A0A1S3B8F2_CUCME1.0e-6780.72pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Cucumis ... [more]
tr|F6HLQ6|F6HLQ6_VITVI2.4e-4863.98Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_08s0007g05520 PE=4 SV=... [more]
tr|M5VX02|M5VX02_PRUPE3.2e-4860.74Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppb002215mg PE=4 SV=1[more]
tr|A0A251N8Q3|A0A251N8Q3_PRUPE3.2e-4860.74Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G042800 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0009451 RNA modification
biological_process GO:0008150 biological_process
cellular_component GO:0043231 intracellular membrane-bounded organelle
cellular_component GO:0005575 cellular_component
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C009774.2.1MELO3C009774.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 63..84
e-value: 0.046
score: 13.9
coord: 112..141
e-value: 0.018
score: 15.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 59..93
score: 7.684
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 109..143
score: 9.032
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 20..185
e-value: 1.1E-8
score: 36.9
NoneNo IPR availablePANTHERPTHR24015:SF379SUBFAMILY NOT NAMEDcoord: 51..177
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 51..177

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C009774.2Csa3G822170Cucumber (Chinese Long) v2cumedB207
MELO3C009774.2CsGy3G035480Cucumber (Gy14) v2cgybmedB185
MELO3C009774.2Cla97C10G198940Watermelon (97103) v2medwmbB305
MELO3C009774.2Bhi11G002354Wax gourdmedwgoB382
MELO3C009774.2Carg03476Silver-seed gourdcarmedB0261
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C009774.2Wax gourdmedwgoB425
MELO3C009774.2Cucurbita pepo (Zucchini)cpemedB679
MELO3C009774.2Cucumber (Gy14) v1cgymedB559
MELO3C009774.2Cucurbita maxima (Rimu)cmamedB260
MELO3C009774.2Cucurbita maxima (Rimu)cmamedB686
MELO3C009774.2Cucurbita maxima (Rimu)cmamedB852
MELO3C009774.2Cucurbita moschata (Rifu)cmomedB244
MELO3C009774.2Cucurbita moschata (Rifu)cmomedB680
MELO3C009774.2Cucurbita moschata (Rifu)cmomedB846
MELO3C009774.2Cucurbita pepo (Zucchini)cpemedB074
MELO3C009774.2Cucurbita pepo (Zucchini)cpemedB938
MELO3C009774.2Wild cucumber (PI 183967)cpimedB208
MELO3C009774.2Bottle gourd (USVL1VR-Ls)lsimedB149
MELO3C009774.2Bottle gourd (USVL1VR-Ls)lsimedB273
MELO3C009774.2Watermelon (Charleston Gray)medwcgB309
MELO3C009774.2Watermelon (97103) v1medwmB344
MELO3C009774.2Cucumber (Chinese Long) v3cucmedB211