CsGy6G007220 (gene) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTGAGACTGACGGTCGATTTAATTTGGAAAAGCCCTCATTTTTTCAATGCCATTAAAGAGCGAGAACTGGACCTTCGAGGTTCTCTAACTTTTCTCAACTCTTCCTTCTTTCACACTCTCCATCACGCATTTCCTTCTTAACTCTTTTCTTCTTCTTCTTCTCTCAGGTAACAAGATAGCAGTGATAGAAAACCTAGGTGCCACCGAGGTGAGTCATTCCCACTGCCTCCTTATTATCTCTTTCTTTTAAATTTCTGGAACTCGAACATAGATTTAAATTATATTTACATGCTGGCGAGAATCGTTCTGCAAATTCAACTTCACTTCAAATTAGTAATAACAGTTCTCAATTTCTCTATACCATTACGAAGTTTGTTTGAAGTTTCGTTTTCCTTGAAGACAGCCTAATAAACTCTAATTTGAGGCCATATGCTTTGCATTTTCCCTTGAGTCATAAGAGTTTTAAATTTTATCATATTGAGGATTCAATTGTCGCTTTTAACCACAAGGATCAGATTTGAGTACTAATAGTTTTTTTCCCATAGAATTATGGCTGGTTACCACCTACCCGAGAGGACTTTTGAAAAGTAATGTTCCGTATCCTTTTTGTAAGGCAGAAGTTGGGGTCAAGATTTCTTTAGAGAGAACCCAGCTCACAGTGAATGAAGAGGTGGTTGTGGTTCATAGTTTTCACATCTTTTCTGCATATGATTGATAGATATGAGATGTTAGGCTATATAGAAAGTGATGACCTCCTTTGCCTTCTGTCTTGAGATTAACACTTATGTAGGCCGTAAATATAAAACCTGTTAGGGAGCTTACTGGTGTAAACCAATCAGTATTTTTTTCTTGAATCAAAATTGTGCCCTTTTACCAAGAGGACTACTATTTATACTAGTCTTTCTCTTAACCAGAAATAGCAAGCTTAACTAACTACTCTAACAGCTAACAACCAACTTTCCCAACATCCATATCAACTGAAAATTTACCCACATCACTCACGTTCCAAAATAAGCTCCACAAGAGAAGAACCCAACTGGATTAATTAGAGGCAAGCAGTTATTGTTGTTTTGTATAAAAAACAATAATTGTCAAATTGGAGTCAACCTTGAAGTTCACTGACATATGAGAAAAGATGCCGTCTGAATCAAGTTTCCAAAGCAGTCCATCCTTATAAGTGCTTAGCCTTATCAGATTGAGCTTAATAGAAAAAAGGATGCACTCTTTACTTTTCAATCTCCTAGTCTCCTCCTCAAGCCTACATCCCATAGACTCCTGTTTCTGTAGATTCTTAATTTCGGTTTTTGGAACATCAGTATCTTGTGAGAAATAGGAGTGTCTATCATCCAACCATCTTTCACAAATGTAATTGTCTCTCATGCCAACTTTGTCTACAATTAAATTACAAATTATCAATGGACCTTGGGTTTTGACAACTCCGTGGCTAACAATCAACTCCATGATCACGACCTTCTACATTTGTGAGCCATCGGATGGGATAAGAACAGCATTTACTCCATAAAACTTCTACACCAGTGCCACTGTATTATTAAGGTTAAATTGCATACATCTAGACTAATCTCCTATTAAAATGGACTGAATACACCAAGAAGGTTGCGCAAACAGACACTTGGTTACAACATCATAATATTTTTTACTTGTAGTGCTTTCTCATCTGAACTCATAAGTTTCCTCTTTATCTGTTTGTTTGGGGATAAAATGATTGGCAATTTATCTTGCTTCCACAAAAATGAAAGAAAATGGTTTCTGCTCTTTGTTTCCTTTTATTTTCTAGACATATAACAGTAGCTTTTCCGACCACAAATTTCAGGATCAATTTGATGCCATTGATTTGTCTGATAATGAGATTGTAAAGCTGGAAAATATGCCCTATCTTAATCGATTGGGCACATTGCTGATCAATAACAATAGAATCACTCGTATCAATCCAAATATTGGAGGTGAGCTTTCCATTATGCCTTCATAGTATTATATAGGCACTGTATGGTAACCATTTTGGTTTCGTGTTCTCTTTCAAAATATTATATTTTTTACTCTGAAAATTTTGTTTTGGTGAGTTTTCCACCTTTCATGAGAACACATTTGAAGTCTAAATCAAAATTCAAAAACAAAATCAAGATTTTAAAAATTACTCATTTTACTTCTCAAAATTTTTCTTGGCGTTTTCAAAACGATATTTAAGTGCAGGTGATGAATCAAGGAAATTATATGTGAAAGTATTGTTTACAAGCTTAATTTTCAAAAATAAAAAAACCAAAAAAACAAAATGGTTATTTGATGGGCTTTAGCAGTATTATTTTTGAAATTATGTTCTTAAAAAATCAATTGTCTTTGTTCATTTCAGAGTTCTTGCCAAATTTACATACACTAGTTCTTACAAACAACAGACTTGTGAACTTAGTAGAGATTGACCCGCTGGCATCCCTTTCGAAACTTCAGTTTCTTAGTTTGTTGGATAACAATATTACAAAGAAGCCAAATTATAGATTGTATGTCATCCACAAGTTGAAGTCAGTCCGGGTGCTTGATTTCAAGAAAGTCAGAAACAAGGTAACTTTTTCCTGCATTTGGACCTTACTATTTAAGGAATGGCTTTAATTCTATACTTGTTTCTGCATTTTACATCGACAATCCAGAAACGTTTAGAAGAGAATTTCAGGTTTGATTCAAATTTTTTATCCGATGGGGTATTTTGAAAATGTTCTAACTTTTAGTATTTGTAAGTACGTAGACCTTGAGTTTTTTTTTATTGTATTTAATATGATATTTGACTCTAAGTTGTGTTTTGATTGTGCTAGTTTCTAACAAATCTTAAACTTCTTGCTATTTTTAGAAGTATTATGCAATCCATGTTCTATTGTTTATTAGAGACTAGAGAGGACACGTTTCCTGCGCATGATAAATGTGCATATGCTCATATGTTAATACCTAAAGAATACAAATGCATTCAGTTTTAATGTCCACAATCATGTGCCTGAGAATTAGTTTTTTGGCTAAAGAAATAAGAAGTAAAAATACTGAAGAAGTGCCTATAAATAGAGTTGAACTTTATTCTATTATAGTAGAACATCCGTGGACAACTAGGATGTGCACGTGTAAGAGTCACTATTTTTGGACAAGTAGGGTTCCACTCTACTTCATTCAACTCCGATTCAATGTGTATGCTTGGTTTAGAGTCTAATTTTGTTCTTGAATCTAATTGGTGCATACATACAAAAATTTCTTGTTGTGTTGGACTTTGGGCACTAGATATCCAATGCCTACTGCATCTCTTCATTTCTAAATGTCAAATGACAGGAGAGATTGGAGGCTAGGAATTTATTTTCGTCTAAGGAAGTTGAAGAAGAGGCGAAGAAGGAATCTGTGAAGACATTCGTTCCAGGTGAGGTAGAGAAGGCATCCAAACCTGTGGAGGAGAAACAAACTCCAAACGTGTCTGCACCAACACCGGAGCAAATTATAGCTATAAAGGTGTGTACGCTATGAAAAAAACTTAAGTTCACCTGCCTTTTCTTGTCTGGAGAAAGGTCAAGCTCTAAAACTTTTAGGGTAAAATGCACTTTTGGTCCAGAGTTCAGAGTCAAATTGCTGAGAAAAAAATTGCTGAAGTTTCAAAACAGATATTTTAATCCATGAGGTCTAGTAAATAGTTCTATATAGTCCTTGACATTTTAATTCATAATGCTTACATGTGAAAAAAAAGTGTATTTTTCCGAACCTCTTTTGTTAACTACCATTTCCTCACGGTAAAAGTATAACAAGAAATGTATTTTTAGGGATTAAAAATTCAAATGGCATCACCTAATATATGGCTTTTGTACAAGTGTTTCACCATCACATGCTTCCTACAACATCTTCTGATCAATCCATTTTTCACATTACAGGCGGCCATTGTTAATTCCCAAACCCTTGAAGAGGTTGCAAGATTAGAACAGGTATGCTTCGTTTTCGTGTCTTCTACAGTCCCCCTCCTCAAAAGGAAAATGCAGGAGAAAAATCTCTATTTAAATGTTATGGGAGTAATAACGTGAGAAAACTCTTCTTTGTTGGCACAGGCGCTCAAGTCAGGTCAGTTACCTGCAGATTTGAATCTTCTAGAAGACAATATTGCACAAAACATCACAAAAGACAAAGACGATAAGACAATGTCCGATAGCGGAGACGAAGAACATGTAACAAATGATGAATCCACACCTATGGAGCAGGTACCACAAACCTTTATGCCTCAGATCGGTTGTTTTCTTTGAGCATATTTCTTTCTTATACCTTTGACGATTTCTAGTTAACGATGTATATCATGTATGTTTTTCATTATTCTGTTTGTGGTTGTAGGAATAA ATGGTGAGACTGACGGTCGATTTAATTTGGAAAAGCCCTCATTTTTTCAATGCCATTAAAGAGCGAGAACTGGACCTTCGAGGTAACAAGATAGCAGTGATAGAAAACCTAGGTGCCACCGAGGAGAGATTGGAGGCTAGGAATTTATTTTCGTCTAAGGAAGTTGAAGAAGAGGCGAAGAAGGAATCTGTGAAGACATTCGTTCCAGGTGAGGTAGAGAAGGCATCCAAACCTGTGGAGGAGAAACAAACTCCAAACGTGTCTGCACCAACACCGGAGCAAATTATAGCTATAAAGGCGGCCATTGTTAATTCCCAAACCCTTGAAGAGGTTGCAAGATTAGAACAGGCGCTCAAGTCAGGTCAGTTACCTGCAGATTTGAATCTTCTAGAAGACAATATTGCACAAAACATCACAAAAGACAAAGACGATAAGACAATGTCCGATAGCGGAGACGAAGAACATGTAACAAATGATGAATCCACACCTATGGAGCAGGAATAA ATGGTGAGACTGACGGTCGATTTAATTTGGAAAAGCCCTCATTTTTTCAATGCCATTAAAGAGCGAGAACTGGACCTTCGAGGTAACAAGATAGCAGTGATAGAAAACCTAGGTGCCACCGAGGAGAGATTGGAGGCTAGGAATTTATTTTCGTCTAAGGAAGTTGAAGAAGAGGCGAAGAAGGAATCTGTGAAGACATTCGTTCCAGGTGAGGTAGAGAAGGCATCCAAACCTGTGGAGGAGAAACAAACTCCAAACGTGTCTGCACCAACACCGGAGCAAATTATAGCTATAAAGGCGGCCATTGTTAATTCCCAAACCCTTGAAGAGGTTGCAAGATTAGAACAGGCGCTCAAGTCAGGTCAGTTACCTGCAGATTTGAATCTTCTAGAAGACAATATTGCACAAAACATCACAAAAGACAAAGACGATAAGACAATGTCCGATAGCGGAGACGAAGAACATGTAACAAATGATGAATCCACACCTATGGAGCAGGAATAA MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEERLEARNLFSSKEVEEEAKKESVKTFVPGEVEKASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNIAQNITKDKDDKTMSDSGDEEHVTNDESTPMEQE
BLAST of CsGy6G007220 vs. NCBI nr
Match: XP_004140564.2 (PREDICTED: U2 small nuclear ribonucleoprotein A', partial [Cucumis sativus]) HSP 1 Score: 256.9 bits (655), Expect = 4.7e-65 Identity = 165/278 (59.35%), Postives = 165/278 (59.35%), Query Frame = 0
BLAST of CsGy6G007220 vs. NCBI nr
Match: XP_022960458.1 (U2 small nuclear ribonucleoprotein A' [Cucurbita moschata] >XP_023514252.1 U2 small nuclear ribonucleoprotein A' [Cucurbita pepo subsp. pepo]) HSP 1 Score: 229.6 bits (584), Expect = 8.0e-57 Identity = 155/286 (54.20%), Postives = 158/286 (55.24%), Query Frame = 0
BLAST of CsGy6G007220 vs. NCBI nr
Match: XP_023005060.1 (U2 small nuclear ribonucleoprotein A' [Cucurbita maxima]) HSP 1 Score: 228.0 bits (580), Expect = 2.3e-56 Identity = 154/286 (53.85%), Postives = 158/286 (55.24%), Query Frame = 0
BLAST of CsGy6G007220 vs. NCBI nr
Match: KGN46395.1 (hypothetical protein Csa_6G089220 [Cucumis sativus]) HSP 1 Score: 224.6 bits (571), Expect = 2.6e-55 Identity = 125/127 (98.43%), Postives = 126/127 (99.21%), Query Frame = 0
BLAST of CsGy6G007220 vs. NCBI nr
Match: XP_022148876.1 (U2 small nuclear ribonucleoprotein A' [Momordica charantia]) HSP 1 Score: 218.8 bits (556), Expect = 1.4e-53 Identity = 149/285 (52.28%), Postives = 154/285 (54.04%), Query Frame = 0
BLAST of CsGy6G007220 vs. TAIR10
Match: AT1G09760.1 (U2 small nuclear ribonucleoprotein A) HSP 1 Score: 89.0 bits (219), Expect = 3.1e-18 Identity = 78/234 (33.33%), Postives = 98/234 (41.88%), Query Frame = 0
BLAST of CsGy6G007220 vs. Swiss-Prot
Match: sp|P43333|RU2A_ARATH (U2 small nuclear ribonucleoprotein A' OS=Arabidopsis thaliana OX=3702 GN=At1g09760 PE=2 SV=2) HSP 1 Score: 89.0 bits (219), Expect = 5.5e-17 Identity = 78/234 (33.33%), Postives = 98/234 (41.88%), Query Frame = 0
BLAST of CsGy6G007220 vs. Swiss-Prot
Match: sp|P09661|RU2A_HUMAN (U2 small nuclear ribonucleoprotein A' OS=Homo sapiens OX=9606 GN=SNRPA1 PE=1 SV=2) HSP 1 Score: 55.8 bits (133), Expect = 5.2e-07 Identity = 29/57 (50.88%), Postives = 43/57 (75.44%), Query Frame = 0
BLAST of CsGy6G007220 vs. Swiss-Prot
Match: sp|Q4R8Y8|RU2A_MACFA (U2 small nuclear ribonucleoprotein A' OS=Macaca fascicularis OX=9541 GN=SNRPA1 PE=2 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 5.2e-07 Identity = 29/57 (50.88%), Postives = 43/57 (75.44%), Query Frame = 0
BLAST of CsGy6G007220 vs. Swiss-Prot
Match: sp|P57784|RU2A_MOUSE (U2 small nuclear ribonucleoprotein A' OS=Mus musculus OX=10090 GN=Snrpa1 PE=1 SV=2) HSP 1 Score: 55.8 bits (133), Expect = 5.2e-07 Identity = 29/57 (50.88%), Postives = 43/57 (75.44%), Query Frame = 0
BLAST of CsGy6G007220 vs. Swiss-Prot
Match: sp|Q9BLB6|RU2A_CAEEL (Probable U2 small nuclear ribonucleoprotein A' OS=Caenorhabditis elegans OX=6239 GN=mog-2 PE=1 SV=1) HSP 1 Score: 51.2 bits (121), Expect = 1.3e-05 Identity = 23/49 (46.94%), Postives = 34/49 (69.39%), Query Frame = 0
BLAST of CsGy6G007220 vs. TrEMBL
Match: tr|A0A0A0K9F1|A0A0A0K9F1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G089220 PE=4 SV=1) HSP 1 Score: 224.6 bits (571), Expect = 1.7e-55 Identity = 125/127 (98.43%), Postives = 126/127 (99.21%), Query Frame = 0
BLAST of CsGy6G007220 vs. TrEMBL
Match: tr|A0A1S3CAU7|A0A1S3CAU7_CUCME (U2 small nuclear ribonucleoprotein A' OS=Cucumis melo OX=3656 GN=LOC103498903 PE=4 SV=1) HSP 1 Score: 188.3 bits (477), Expect = 1.4e-44 Identity = 133/279 (47.67%), Postives = 146/279 (52.33%), Query Frame = 0
BLAST of CsGy6G007220 vs. TrEMBL
Match: tr|E5GB46|E5GB46_CUCME (U2 small nuclear ribonucleoprotein a OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1) HSP 1 Score: 188.3 bits (477), Expect = 1.4e-44 Identity = 133/279 (47.67%), Postives = 146/279 (52.33%), Query Frame = 0
BLAST of CsGy6G007220 vs. TrEMBL
Match: tr|A0A059ADU7|A0A059ADU7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J01697 PE=4 SV=1) HSP 1 Score: 169.9 bits (429), Expect = 5.0e-39 Identity = 124/287 (43.21%), Postives = 140/287 (48.78%), Query Frame = 0
BLAST of CsGy6G007220 vs. TrEMBL
Match: tr|U7DXL9|U7DXL9_POPTR (U2 small nuclear ribonucleoprotein A OS=Populus trichocarpa OX=3694 GN=POPTR_003G158800v3 PE=4 SV=1) HSP 1 Score: 168.3 bits (425), Expect = 1.5e-38 Identity = 124/285 (43.51%), Postives = 139/285 (48.77%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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