CsGy5G027780 (gene) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAACAATGGGCGTTGTTTAGCTTGTTCAGATTCTCAGAAGCCGTAGAAGCTCAAGAGGCTGACATCACATTTAACTTCGTGAGAGGGAACCATGGAGATGGCTATCCATTCGATGGAAAAGGAGGGGTTTTGGCACATGCTTTTGGGCCATTGGATGGGAGGGTGCACTTTGATTGGGATGAGGATTGGGCAGATGGTTCCGTTGGTGGTTTCATAAATGTGGGGATGGTTGCTTTGCATGAGCTCGGGCATGTGCTCGGCCTTGCTCACAGCACCATCAGAGACGCCATTATGTGGCCCTACATGGAAGCCGGTGAACAAACTAGGGGCTTACAGTTTGATGATATTGAAGGCATCCAAACTTTATATGCTCCATGA ATGGAACAATGGGCGTTGTTTAGCTTGTTCAGATTCTCAGAAGCCGTAGAAGCTCAAGAGGCTGACATCACATTTAACTTCGTGAGAGGGAACCATGGAGATGGCTATCCATTCGATGGAAAAGGAGGGGTTTTGGCACATGCTTTTGGGCCATTGGATGGGAGGGTGCACTTTGATTGGGATGAGGATTGGGCAGATGGTTCCGTTGGTGGTTTCATAAATGTGGGGATGGTTGCTTTGCATGAGCTCGGGCATGTGCTCGGCCTTGCTCACAGCACCATCAGAGACGCCATTATGTGGCCCTACATGGAAGCCGGTGAACAAACTAGGGGCTTACAGTTTGATGATATTGAAGGCATCCAAACTTTATATGCTCCATGA ATGGAACAATGGGCGTTGTTTAGCTTGTTCAGATTCTCAGAAGCCGTAGAAGCTCAAGAGGCTGACATCACATTTAACTTCGTGAGAGGGAACCATGGAGATGGCTATCCATTCGATGGAAAAGGAGGGGTTTTGGCACATGCTTTTGGGCCATTGGATGGGAGGGTGCACTTTGATTGGGATGAGGATTGGGCAGATGGTTCCGTTGGTGGTTTCATAAATGTGGGGATGGTTGCTTTGCATGAGCTCGGGCATGTGCTCGGCCTTGCTCACAGCACCATCAGAGACGCCATTATGTGGCCCTACATGGAAGCCGGTGAACAAACTAGGGGCTTACAGTTTGATGATATTGAAGGCATCCAAACTTTATATGCTCCATGA MEQWALFSLFRFSEAVEAQEADITFNFVRGNHGDGYPFDGKGGVLAHAFGPLDGRVHFDWDEDWADGSVGGFINVGMVALHELGHVLGLAHSTIRDAIMWPYMEAGEQTRGLQFDDIEGIQTLYAP
BLAST of CsGy5G027780 vs. NCBI nr
Match: XP_004142465.1 (PREDICTED: metalloendoproteinase 1-like [Cucumis sativus] >KGN52409.1 hypothetical protein Csa_5G632080 [Cucumis sativus]) HSP 1 Score: 271.2 bits (692), Expect = 1.8e-69 Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0
BLAST of CsGy5G027780 vs. NCBI nr
Match: XP_008458910.1 (PREDICTED: metalloendoproteinase 2-MMP-like [Cucumis melo]) HSP 1 Score: 255.8 bits (652), Expect = 7.9e-65 Identity = 116/126 (92.06%), Postives = 120/126 (95.24%), Query Frame = 0
BLAST of CsGy5G027780 vs. NCBI nr
Match: XP_022133603.1 (metalloendoproteinase 1-like [Momordica charantia]) HSP 1 Score: 156.0 bits (393), Expect = 8.5e-35 Identity = 74/122 (60.66%), Postives = 87/122 (71.31%), Query Frame = 0
BLAST of CsGy5G027780 vs. NCBI nr
Match: XP_004139163.1 (PREDICTED: metalloendoproteinase 1-like [Cucumis sativus] >KGN66654.1 hypothetical protein Csa_1G654840 [Cucumis sativus]) HSP 1 Score: 151.8 bits (382), Expect = 1.6e-33 Identity = 70/121 (57.85%), Postives = 88/121 (72.73%), Query Frame = 0
BLAST of CsGy5G027780 vs. NCBI nr
Match: XP_022133607.1 (metalloendoproteinase 1-like [Momordica charantia]) HSP 1 Score: 151.0 bits (380), Expect = 2.7e-33 Identity = 74/123 (60.16%), Postives = 85/123 (69.11%), Query Frame = 0
BLAST of CsGy5G027780 vs. TAIR10
Match: AT1G59970.1 (Matrixin family protein) HSP 1 Score: 113.2 bits (282), Expect = 1.1e-25 Identity = 57/131 (43.51%), Postives = 77/131 (58.78%), Query Frame = 0
BLAST of CsGy5G027780 vs. TAIR10
Match: AT1G70170.1 (matrix metalloproteinase) HSP 1 Score: 113.2 bits (282), Expect = 1.1e-25 Identity = 55/129 (42.64%), Postives = 79/129 (61.24%), Query Frame = 0
BLAST of CsGy5G027780 vs. TAIR10
Match: AT2G45040.1 (Matrixin family protein) HSP 1 Score: 109.8 bits (273), Expect = 1.3e-24 Identity = 54/126 (42.86%), Postives = 75/126 (59.52%), Query Frame = 0
BLAST of CsGy5G027780 vs. TAIR10
Match: AT1G24140.1 (Matrixin family protein) HSP 1 Score: 105.9 bits (263), Expect = 1.8e-23 Identity = 53/130 (40.77%), Postives = 72/130 (55.38%), Query Frame = 0
BLAST of CsGy5G027780 vs. TAIR10
Match: AT4G16640.1 (Matrixin family protein) HSP 1 Score: 103.6 bits (257), Expect = 9.1e-23 Identity = 52/129 (40.31%), Postives = 70/129 (54.26%), Query Frame = 0
BLAST of CsGy5G027780 vs. Swiss-Prot
Match: sp|O04529|2MMP_ARATH (Metalloendoproteinase 2-MMP OS=Arabidopsis thaliana OX=3702 GN=2MMP PE=1 SV=1) HSP 1 Score: 113.2 bits (282), Expect = 2.1e-24 Identity = 55/129 (42.64%), Postives = 79/129 (61.24%), Query Frame = 0
BLAST of CsGy5G027780 vs. Swiss-Prot
Match: sp|Q9ZUJ5|5MMP_ARATH (Metalloendoproteinase 5-MMP OS=Arabidopsis thaliana OX=3702 GN=5MMP PE=1 SV=1) HSP 1 Score: 113.2 bits (282), Expect = 2.1e-24 Identity = 57/131 (43.51%), Postives = 77/131 (58.78%), Query Frame = 0
BLAST of CsGy5G027780 vs. Swiss-Prot
Match: sp|P22757|HE_PARLI (Hatching enzyme OS=Paracentrotus lividus OX=7656 PE=1 SV=1) HSP 1 Score: 111.3 bits (277), Expect = 7.8e-24 Identity = 57/121 (47.11%), Postives = 70/121 (57.85%), Query Frame = 0
BLAST of CsGy5G027780 vs. Swiss-Prot
Match: sp|Q8MPP3|D2MP_DROME (Matrix metalloproteinase-2 OS=Drosophila melanogaster OX=7227 GN=Mmp2 PE=2 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 1.0e-23 Identity = 68/133 (51.13%), Postives = 79/133 (59.40%), Query Frame = 0
BLAST of CsGy5G027780 vs. Swiss-Prot
Match: sp|Q8GWW6|4MMP_ARATH (Metalloendoproteinase 4-MMP OS=Arabidopsis thaliana OX=3702 GN=4MMP PE=1 SV=1) HSP 1 Score: 109.8 bits (273), Expect = 2.3e-23 Identity = 54/126 (42.86%), Postives = 75/126 (59.52%), Query Frame = 0
BLAST of CsGy5G027780 vs. TrEMBL
Match: tr|A0A0A0KU02|A0A0A0KU02_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G632080 PE=3 SV=1) HSP 1 Score: 271.2 bits (692), Expect = 1.2e-69 Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0
BLAST of CsGy5G027780 vs. TrEMBL
Match: tr|A0A1S3C931|A0A1S3C931_CUCME (metalloendoproteinase 2-MMP-like OS=Cucumis melo OX=3656 GN=LOC103498173 PE=3 SV=1) HSP 1 Score: 255.8 bits (652), Expect = 5.2e-65 Identity = 116/126 (92.06%), Postives = 120/126 (95.24%), Query Frame = 0
BLAST of CsGy5G027780 vs. TrEMBL
Match: tr|A0A0A0M032|A0A0A0M032_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G654840 PE=3 SV=1) HSP 1 Score: 151.8 bits (382), Expect = 1.1e-33 Identity = 70/121 (57.85%), Postives = 88/121 (72.73%), Query Frame = 0
BLAST of CsGy5G027780 vs. TrEMBL
Match: tr|A0A1S3B8J8|A0A1S3B8J8_CUCME (metalloendoproteinase 2-MMP-like OS=Cucumis melo OX=3656 GN=LOC103487215 PE=3 SV=1) HSP 1 Score: 149.4 bits (376), Expect = 5.3e-33 Identity = 69/121 (57.02%), Postives = 87/121 (71.90%), Query Frame = 0
BLAST of CsGy5G027780 vs. TrEMBL
Match: tr|A0A1S3C9Q9|A0A1S3C9Q9_CUCME (metalloendoproteinase 2-MMP-like OS=Cucumis melo OX=3656 GN=LOC103498041 PE=3 SV=1) HSP 1 Score: 149.1 bits (375), Expect = 6.9e-33 Identity = 70/121 (57.85%), Postives = 86/121 (71.07%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |