CsGy5G004320 (gene) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGATTGAGAGGACGTATGAAACTGTGATGAAATAATATGAAACTTCATTTTATTCATATATATTTGTAATATACTTTAGTTTTAATTTATACAGATTTTTTGTTTTGATATTTAGTAATTAAACTAGCATGTGTATATAGTTTTTATACATTTGAACCAGAAATTTTCAAGGAAGATTTGGATATATGTCCGCTTAAATTTGGGTGCAAATTTTCAAATTTTGGTATAAGCAATGTTTTAAATTTTCACGTTGAAAGCATATCAATAAAAGACTTAATTTCACAAAAATTATAATATAAGCAATGTTTTAAATTTTCATGTTGAAAGCATATCAATAAAAGACTTAATTTCACAAAAAATATAATGAAAATATGCTTAAAATATCCTCGAGAAATGCACAAACAGCTTAGATGGAGTTTTATGTATATGGAAAGAAAATGCAACCTAATTAAACTTAAAAAAAAAAAAAGAAACCAACATTAAATTGATCTAGTGGTATAAATGTCATAACTAACTAAGAGATCATGGGTTGAATATGGTTGACTTAGTGGTAAAAATGTCATAACTAAGAGGTCATGAGTTAGATCTACGGTGCCTACCTACCTAGGAATTAATTTTCCATGGGTTTCCTTGAGTACACTAACATATATAAGAAAGCCTTAAAGAAAAGAAAAGAAAAACTCACCGAAATTAATATGGAGAAATGTTCGAGAGAAGGTACGAATTATGAAGAAAAGAATCCGCCTCTTGACACTCTTTAGAGAGAAGAGAGAAAAATAAAAAATCCACCTCGTAGAGAGAAAAATCAAGAATCGAACACGTCGAGAAAATTATGAAGAATCAGATCTCATTTGTATGTATATATATTTTTTTTGAACCAATATTAAGTTTCCCGCCAAATCCTAAATTGTAATTATTGTCTTTTTATGCTAAAATTTTTGAATATAAACAAATATATAAACAAACAAACTTTATGTCTAAAGATTCGATTTAATAATTTTTCAATATATATTTATTTTCGGACGTCGGATCGTTTCGCGCCAAAATCATGAGCCCATAACATTTCCACACTCAACGCTGGTAGTGCTCAATCGCTCATAACAGTGTTCAATTATACTAAAAAATTTAAAGTTTAAAATAGTAAATTTTAATTTTTTAAGATATTCAAATATTATAAGTTGGTAAAGTAAAATATTTGTAATTATGTAATAGGAATAATTTATACATAACAAAAGAAAATTTAATTACAAACCAAAATATCTATTTAAAAATTTTAAATTATACCTAAGTTAGAAATTAAAGATTTTCGTGATATTTTGATTCTTTTAAATGGAATTATGGATTAAAACATCTCTTTATTCTTTTGTTTCGAAAAATTGTATTATTCTGATTGTAATCACGGTTGTTCGATAAAGTCATAAAAATAATTTAAAAATATTTTTAAATTGAAAATTTATAAACTATGTCTAGATTGTAGGAACTAAATTTGTTATTGAATCAATACAAAATCAATAAACTTAATTAGAGTGTCATAACTGAAAAGTAATTATAAAAGATATCCGTAGTTTATATATATATGCTATTATTAAATCCAAATCTACCAATGATAATGAGGTGACCACATTGGACAATTACATCTTAGTTAGAGAATATAAAAGACCTATATAACAACATAAGTTCATGAATACATAGCTATATGACTACAAAATTACATAAATAGAGAGGAAAATTAGTGAGCAACCCTAATATAACAAAATATACTTTTTTTTTTTCATTAAGAGGTTACAAGTCTTTCTTAATTCTTTAGTAATGATTACAAGTCTTCTCAAAGAAAGTGTATCTGCCCTTACCCACTATTTCCTTTTACAGTGTCGAGCGTTATTTTGCTAAAAACTGCCTTTGAGGCATTGTCTTTACTCTCAAAGGTAATATTCTTTCCAAATATATAGAAGACTCTTCAGAACTCGAGCACGTACTTGTGATGGGTTCGTTCAAAATTTTAGGTACTTAAGGAAGCAAAGAGTTTTCTGGTTGCAAACATTTACAAATATGTTTGTGAAAACGAAAAATATGCAAACATTAGAAAAAGGTAACTTGGCTCCTGCCAATGATTATTACACAATCCTAATAATATGATCTTTTTGATTAGCAAACCAATCTTTCTTAAATATTTAAATTAACTTATTTTGAATAACACTCAAATAACACATTGAATTTCATTATTTCCATTCCAATTACTTGGGTTGTGTACCTGACTTTGGTCCCCTCTAATCTCAGCGAATACGAGAAGCTCGGATCCCACGCCCTAATTGGCCTACCTTCCTCTTATTCCACACGCTTCGTGGAATCTGAATAA ATGATTGAGAGGACATTTTTTGTTTTGATATTTATGTCGAGCGTTATTTTGCTAAAAACTGCCTTTGAGGCATTGTCTTTACTCTCAAAGGTACTTAAGGAAGCAAAGAGTTTTCTGGTTGCAAACATTTACAAATATGTTTGTGAAAACGAAAAATATGCAAACATTAGAAAAAGCGAATACGAGAAGCTCGGATCCCACGCCCTAATTGGCCTACCTTCCTCTTATTCCACACGCTTCGTGGAATCTGAATAA ATGATTGAGAGGACATTTTTTGTTTTGATATTTATGTCGAGCGTTATTTTGCTAAAAACTGCCTTTGAGGCATTGTCTTTACTCTCAAAGGTACTTAAGGAAGCAAAGAGTTTTCTGGTTGCAAACATTTACAAATATGTTTGTGAAAACGAAAAATATGCAAACATTAGAAAAAGCGAATACGAGAAGCTCGGATCCCACGCCCTAATTGGCCTACCTTCCTCTTATTCCACACGCTTCGTGGAATCTGAATAA MIERTFFVLIFMSSVILLKTAFEALSLLSKVLKEAKSFLVANIYKYVCENEKYANIRKSEYEKLGSHALIGLPSSYSTRFVESE
BLAST of CsGy5G004320 vs. NCBI nr
Match: XP_008437055.1 (PREDICTED: DNA mismatch repair protein MSH4 [Cucumis melo]) HSP 1 Score: 76.6 bits (187), Expect = 4.4e-11 Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 0
BLAST of CsGy5G004320 vs. NCBI nr
Match: KGN50271.1 (hypothetical protein Csa_5G165160 [Cucumis sativus]) HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10 Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0
BLAST of CsGy5G004320 vs. NCBI nr
Match: XP_011656157.1 (PREDICTED: DNA mismatch repair protein MSH4 [Cucumis sativus]) HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10 Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0
BLAST of CsGy5G004320 vs. NCBI nr
Match: XP_021631808.1 (DNA mismatch repair protein MSH4 isoform X5 [Manihot esculenta] >OAY60055.1 hypothetical protein MANES_01G082400 [Manihot esculenta]) HSP 1 Score: 73.9 bits (180), Expect = 2.8e-10 Identity = 39/49 (79.59%), Postives = 45/49 (91.84%), Query Frame = 0
BLAST of CsGy5G004320 vs. NCBI nr
Match: OAY60056.1 (hypothetical protein MANES_01G082400 [Manihot esculenta]) HSP 1 Score: 73.9 bits (180), Expect = 2.8e-10 Identity = 39/49 (79.59%), Postives = 45/49 (91.84%), Query Frame = 0
BLAST of CsGy5G004320 vs. TAIR10
Match: AT4G17380.1 (MUTS-like protein 4) HSP 1 Score: 66.6 bits (161), Expect = 8.2e-12 Identity = 34/58 (58.62%), Postives = 46/58 (79.31%), Query Frame = 0
BLAST of CsGy5G004320 vs. TAIR10
Match: AT2G43090.1 (Aconitase/3-isopropylmalate dehydratase protein) HSP 1 Score: 41.2 bits (95), Expect = 3.7e-04 Identity = 17/23 (73.91%), Postives = 21/23 (91.30%), Query Frame = 0
BLAST of CsGy5G004320 vs. Swiss-Prot
Match: sp|F4JP48|MSH4_ARATH (DNA mismatch repair protein MSH4 OS=Arabidopsis thaliana OX=3702 GN=MSH4 PE=2 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 1.5e-10 Identity = 34/58 (58.62%), Postives = 46/58 (79.31%), Query Frame = 0
BLAST of CsGy5G004320 vs. TrEMBL
Match: tr|A0A1S3ATN6|A0A1S3ATN6_CUCME (DNA mismatch repair protein MSH4 OS=Cucumis melo OX=3656 GN=LOC103482597 PE=4 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 2.9e-11 Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 0
BLAST of CsGy5G004320 vs. TrEMBL
Match: tr|A0A0A0KRC1|A0A0A0KRC1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G165160 PE=4 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 8.4e-11 Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0
BLAST of CsGy5G004320 vs. TrEMBL
Match: tr|A0A2C9WLG3|A0A2C9WLG3_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G082400 PE=4 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 1.9e-10 Identity = 39/49 (79.59%), Postives = 45/49 (91.84%), Query Frame = 0
BLAST of CsGy5G004320 vs. TrEMBL
Match: tr|A0A2C9WKC0|A0A2C9WKC0_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G082400 PE=4 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 1.9e-10 Identity = 39/49 (79.59%), Postives = 45/49 (91.84%), Query Frame = 0
BLAST of CsGy5G004320 vs. TrEMBL
Match: tr|A0A1R3G349|A0A1R3G349_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_37144 PE=4 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 4.2e-10 Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |