CsGy4G016700 (gene) Cucumber (Gy14) v2

NameCsGy4G016700
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionconserved oligomeric Golgi complex subunit 6
LocationChr4 : 21729172 .. 21729926 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGAGCAAGCAACAGAAATTCGCAAGTCTAAGGGATCTGGCCTCATATCAAGAAGGGGTAGGACGACTTCTGGTTCCGGTCAGAATAGCAAATCATCAGTAGATGCACTATTGTCCCAAAGCAGCCCTGCTCTAGCCTCTCAGGTTGGCATGACCATCTTTTCCTGTCTTTCAATGGGGTATGCATAATTATAACTTGTTTTCAATCTGAAAAACTTCGGTATCCTATCGCCTGAGCGCAGAACATTGAAACACCTTCAAAGATCTTTCTGATCAACTGTCTATGTGCCATCCAACAGCCATTATCTGGCCACGAGGTTGCAGCTGAATATGTCAAGAAACTTGAAGTAATGATAAATTAGTCACATGAGTGTGCTTGTTGAAAAGGAAGTTGGGAGGTGCGGCTTATCTCAAAAGATGACGTATTTCCATAAAATCTCACAAACAGGCAATGCAACGGGATGGACCGAGATTCAAGACACGTCTCTCCCGCTTCACTTTCAGAGAGCTTGAAAGCTTTCTTTGGGCATGTTTTGGGAAGTGAGAGTTTCCTTCCTAAGTTTGAGCTATTACAGGTTCCTAAACTGCGAACGGAAGCCTGTGTTCAAGTGGCTCGATCACTCTCTGAAGCGTACAAACTTATATACGACACAATCATGGATCCAAACAACAGGTACCCAGACCCCACTGCGTGCAAGGCATCCTCCAAACCAGATAAGAACGATTTTGGGAATATAACTATAGAGATTTAA

mRNA sequence

ATGTGTGAGCAAGCAACAGAAATTCGCAAGTCTAAGGGATCTGGCCTCATATCAAGAAGGGGTAGGACGACTTCTGGTTCCGGTCAGAATAGCAAATCATCAGTAGATGCACTATTGTCCCAAAGCAGCCCTGCTCTAGCCTCTCAGGTTGGCATGACCATCTTTTCCTGTCTTTCAATGGGGCAATGCAACGGGATGGACCGAGATTCAAGACACGTCTCTCCCGCTTCACTTTCAGAGAGCTTGAAAGCTTTCTTTGGGCATGTTTTGGGAAGTGAGAGTTTCCTTCCTAAGTTTGAGCTATTACAGGTTCCTAAACTGCGAACGGAAGCCTGTGTTCAAGTGGCTCGATCACTCTCTGAAGCGTACAAACTTATATACGACACAATCATGGATCCAAACAACAGGTACCCAGACCCCACTGCGTGCAAGGCATCCTCCAAACCAGATAAGAACGATTTTGGGAATATAACTATAGAGATTTAA

Coding sequence (CDS)

ATGTGTGAGCAAGCAACAGAAATTCGCAAGTCTAAGGGATCTGGCCTCATATCAAGAAGGGGTAGGACGACTTCTGGTTCCGGTCAGAATAGCAAATCATCAGTAGATGCACTATTGTCCCAAAGCAGCCCTGCTCTAGCCTCTCAGGTTGGCATGACCATCTTTTCCTGTCTTTCAATGGGGCAATGCAACGGGATGGACCGAGATTCAAGACACGTCTCTCCCGCTTCACTTTCAGAGAGCTTGAAAGCTTTCTTTGGGCATGTTTTGGGAAGTGAGAGTTTCCTTCCTAAGTTTGAGCTATTACAGGTTCCTAAACTGCGAACGGAAGCCTGTGTTCAAGTGGCTCGATCACTCTCTGAAGCGTACAAACTTATATACGACACAATCATGGATCCAAACAACAGGTACCCAGACCCCACTGCGTGCAAGGCATCCTCCAAACCAGATAAGAACGATTTTGGGAATATAACTATAGAGATTTAA

Protein sequence

MCEQATEIRKSKGSGLISRRGRTTSGSGQNSKSSVDALLSQSSPALASQVGMTIFSCLSMGQCNGMDRDSRHVSPASLSESLKAFFGHVLGSESFLPKFELLQVPKLRTEACVQVARSLSEAYKLIYDTIMDPNNRYPDPTACKASSKPDKNDFGNITIEI
BLAST of CsGy4G016700 vs. NCBI nr
Match: KGN54536.1 (hypothetical protein Csa_4G358740 [Cucumis sativus])

HSP 1 Score: 188.0 bits (476), Expect = 2.6e-44
Identity = 92/96 (95.83%), Postives = 94/96 (97.92%), Query Frame = 0

Query: 66  MDRDSRHVSPASLSESLKAFFGHVLGSESFLPKFELLQVPKLRTEACVQVARSLSEAYKL 125
           MDRDSRH+SPASLSESLKAFFGHVLGSESFLPKFELLQVPKLRTEACVQVARSLSEA KL
Sbjct: 1   MDRDSRHISPASLSESLKAFFGHVLGSESFLPKFELLQVPKLRTEACVQVARSLSEADKL 60

Query: 126 IYDTIMDPNNRYPDPTACKASSKPDKNDFGNITIEI 162
           IY+TIMDPNNRYPDPTACKASSKPDK DFGNITIEI
Sbjct: 61  IYNTIMDPNNRYPDPTACKASSKPDKKDFGNITIEI 96

BLAST of CsGy4G016700 vs. NCBI nr
Match: XP_022941125.1 (conserved oligomeric Golgi complex subunit 6 [Cucurbita moschata])

HSP 1 Score: 159.1 bits (401), Expect = 1.3e-35
Identity = 103/208 (49.52%), Postives = 122/208 (58.65%), Query Frame = 0

Query: 1   MCEQATEIRKSKGSGLISRRGRTTSGSGQNSKSSVDALLSQSSPALASQVGMT-----IF 60
           MCEQA E  KSKG+G ISRRGR  + S QNSKSSVDALLSQSSPA ASQ   T     + 
Sbjct: 475 MCEQAAEAHKSKGAGHISRRGRMNTDSSQNSKSSVDALLSQSSPAPASQDTETPSKIFLI 534

Query: 61  SCLS--------------------------------------MGQCNGMDR--------- 120
           +CLS                                      + +C   ++         
Sbjct: 535 NCLSAIQQPISGHEVAAEYVKKLGVMINNHLSVLVEKEVDAILRRCGLSEKMTYFHKSSD 594

Query: 121 -----DSRHVSPASLSESLKAFFGHVLGSESFLPKFELLQVPKLRTEACVQVARSLSEAY 152
                D++H SPASLSE+LKAFFG VLGSES LP+FELLQVPKLR+EAC+QVARSL+E Y
Sbjct: 595 GLPLADNQHTSPASLSENLKAFFGLVLGSESSLPEFELLQVPKLRSEACIQVARSLAEGY 654

BLAST of CsGy4G016700 vs. NCBI nr
Match: XP_023525183.1 (conserved oligomeric Golgi complex subunit 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 159.1 bits (401), Expect = 1.3e-35
Identity = 103/208 (49.52%), Postives = 122/208 (58.65%), Query Frame = 0

Query: 1   MCEQATEIRKSKGSGLISRRGRTTSGSGQNSKSSVDALLSQSSPALASQVGMT-----IF 60
           MCEQA E  KSKG+G ISRRGR  + S QNSKSSVDALLSQSSPA ASQ   T     + 
Sbjct: 475 MCEQAAEAHKSKGAGHISRRGRMNADSSQNSKSSVDALLSQSSPAPASQDTETPSKIFLI 534

Query: 61  SCLS--------------------------------------MGQCNGMDR--------- 120
           +CLS                                      + +C   ++         
Sbjct: 535 NCLSAIQQPISGHEVAAEYVKKLGVMINNHLSVLVEKEVDAILRRCGLSEKMAYFHKSSD 594

Query: 121 -----DSRHVSPASLSESLKAFFGHVLGSESFLPKFELLQVPKLRTEACVQVARSLSEAY 152
                D++H SPASLSE+LKAFFG VLGSES LP+FELLQVPKLR+EAC+QVARSL+E Y
Sbjct: 595 GLPLADNQHTSPASLSENLKAFFGLVLGSESSLPEFELLQVPKLRSEACIQVARSLAEGY 654

BLAST of CsGy4G016700 vs. NCBI nr
Match: XP_022980951.1 (conserved oligomeric Golgi complex subunit 6 [Cucurbita maxima])

HSP 1 Score: 157.9 bits (398), Expect = 2.9e-35
Identity = 104/208 (50.00%), Postives = 121/208 (58.17%), Query Frame = 0

Query: 1   MCEQATEIRKSKGSGLISRRGRTTSGSGQNSKSSVDALLSQSSPALASQVGMT-----IF 60
           MCEQA E  KSKG+G ISRRGR  + S QNSKSSVDALLSQSSPA ASQ   T     + 
Sbjct: 475 MCEQAAEAHKSKGAGHISRRGRMNTDSSQNSKSSVDALLSQSSPAPASQDTETPSKIFLI 534

Query: 61  SCLSMGQ---------------------------------------------------CN 120
           +CLS  Q                                                    +
Sbjct: 535 NCLSAIQQPISGHEVAAEYVKKLGVMINNHLSVLVEKEVDAILRRCGLSGKMTYFHKSSD 594

Query: 121 GMD-RDSRHVSPASLSESLKAFFGHVLGSESFLPKFELLQVPKLRTEACVQVARSLSEAY 152
           G+   D++H SPASLSE+LKAFFG VLGSES LP+FELLQVPKLR+EAC+QVARSL+E Y
Sbjct: 595 GLPLADNQHTSPASLSENLKAFFGLVLGSESSLPEFELLQVPKLRSEACIQVARSLAEGY 654

BLAST of CsGy4G016700 vs. NCBI nr
Match: XP_004142643.1 (PREDICTED: conserved oligomeric Golgi complex subunit 6 [Cucumis sativus] >KGN54532.1 hypothetical protein Csa_4G358700 [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 3.7e-35
Identity = 106/203 (52.22%), Postives = 118/203 (58.13%), Query Frame = 0

Query: 1   MCEQATEIRKSKGSGLISRRGRTTSGSGQNSKSSVDALLSQSSPALASQ----------- 60
           MCEQA EI KSKGS  ISRRGRT SGS QNSKSSVDALLSQSSPA A+Q           
Sbjct: 475 MCEQAAEIHKSKGSSHISRRGRTNSGSSQNSKSSVDALLSQSSPAPAAQDTETPSKIFLI 534

Query: 61  ----------------------VGMTIFSCLS----------MGQC-------------- 120
                                 +G+ I S LS          + +C              
Sbjct: 535 NCLCAIQQPLSSHEVAAEYVNKLGVMINSHLSVLVEKEVAAILRRCDLSQKMTYFHKSSE 594

Query: 121 --NGMD----RDSRHVSPASLSESLKAFFGHVLGSESFLPKFELLQVPKLRTEACVQVAR 141
             N  D     + +  SPASLSESLKAFFG  LGSES LP+FELLQVPKLR+EAC+QVAR
Sbjct: 595 AGNAADGLRLAEIQDTSPASLSESLKAFFGLALGSESSLPEFELLQVPKLRSEACIQVAR 654

BLAST of CsGy4G016700 vs. TAIR10
Match: AT1G31780.1 (Conserved oligomeric complex COG6 (InterPro:IPR010490))

HSP 1 Score: 109.4 bits (272), Expect = 2.1e-24
Identity = 82/206 (39.81%), Postives = 105/206 (50.97%), Query Frame = 0

Query: 1   MCEQATEIRKSKGSGLISRRGRTTSGSGQNSKSSVDALLSQS-SPALASQVGMTIF--SC 60
           MCEQA E  KSK SG + RR RT+S S Q   +SVDALLS S SP   ++    IF  +C
Sbjct: 471 MCEQAAEAHKSKKSGQLPRRSRTSSDSSQ--LTSVDALLSSSPSPPQNNETPSKIFLINC 530

Query: 61  LS--------------------------------------MGQCNGMDR----------- 120
           L                                       + +C   D+           
Sbjct: 531 LCAIQQPLLRHDVASQYVTNIGLMIENHINLLVQNEVDTLLHKCGLSDKMQIFRSSTSEL 590

Query: 121 ---DSRHVSPASLSESLKAFFGHVLGSESFLPKFELLQVPKLRTEACVQVARSLSEAYKL 152
              + +  SPA LSE LKAFFG VLGSE  LP+FE +QVPKLR+EACV+VA++L+EAY++
Sbjct: 591 PLSERQDTSPAMLSECLKAFFGLVLGSEGSLPEFEQIQVPKLRSEACVRVAKTLAEAYEV 650

BLAST of CsGy4G016700 vs. TrEMBL
Match: tr|A0A0A0L353|A0A0A0L353_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G358740 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.7e-44
Identity = 92/96 (95.83%), Postives = 94/96 (97.92%), Query Frame = 0

Query: 66  MDRDSRHVSPASLSESLKAFFGHVLGSESFLPKFELLQVPKLRTEACVQVARSLSEAYKL 125
           MDRDSRH+SPASLSESLKAFFGHVLGSESFLPKFELLQVPKLRTEACVQVARSLSEA KL
Sbjct: 1   MDRDSRHISPASLSESLKAFFGHVLGSESFLPKFELLQVPKLRTEACVQVARSLSEADKL 60

Query: 126 IYDTIMDPNNRYPDPTACKASSKPDKNDFGNITIEI 162
           IY+TIMDPNNRYPDPTACKASSKPDK DFGNITIEI
Sbjct: 61  IYNTIMDPNNRYPDPTACKASSKPDKKDFGNITIEI 96

BLAST of CsGy4G016700 vs. TrEMBL
Match: tr|A0A0A0L1U3|A0A0A0L1U3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G358700 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.5e-35
Identity = 106/203 (52.22%), Postives = 118/203 (58.13%), Query Frame = 0

Query: 1   MCEQATEIRKSKGSGLISRRGRTTSGSGQNSKSSVDALLSQSSPALASQ----------- 60
           MCEQA EI KSKGS  ISRRGRT SGS QNSKSSVDALLSQSSPA A+Q           
Sbjct: 475 MCEQAAEIHKSKGSSHISRRGRTNSGSSQNSKSSVDALLSQSSPAPAAQDTETPSKIFLI 534

Query: 61  ----------------------VGMTIFSCLS----------MGQC-------------- 120
                                 +G+ I S LS          + +C              
Sbjct: 535 NCLCAIQQPLSSHEVAAEYVNKLGVMINSHLSVLVEKEVAAILRRCDLSQKMTYFHKSSE 594

Query: 121 --NGMD----RDSRHVSPASLSESLKAFFGHVLGSESFLPKFELLQVPKLRTEACVQVAR 141
             N  D     + +  SPASLSESLKAFFG  LGSES LP+FELLQVPKLR+EAC+QVAR
Sbjct: 595 AGNAADGLRLAEIQDTSPASLSESLKAFFGLALGSESSLPEFELLQVPKLRSEACIQVAR 654

BLAST of CsGy4G016700 vs. TrEMBL
Match: tr|A0A1S3BAN8|A0A1S3BAN8_CUCME (conserved oligomeric Golgi complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103487619 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.2e-35
Identity = 106/203 (52.22%), Postives = 117/203 (57.64%), Query Frame = 0

Query: 1   MCEQATEIRKSKGSGLISRRGRTTSGSGQNSKSSVDALLSQSSPALASQ----------- 60
           MCEQA EI KSKGS  ISRRGRT SGS QNSKSSVDALLSQS PA ASQ           
Sbjct: 475 MCEQAAEIHKSKGSSHISRRGRTNSGSSQNSKSSVDALLSQSGPAPASQDTETPSKIFLI 534

Query: 61  ----------------------VGMTIFSCLS----------MGQC-------------- 120
                                 +G+ I S LS          + +C              
Sbjct: 535 NCLCAIQQPLSGHEVAAEYVKKLGVMINSHLSVLVEKEVAAILRRCDLSQKMTYFHKSLE 594

Query: 121 --NGMD----RDSRHVSPASLSESLKAFFGHVLGSESFLPKFELLQVPKLRTEACVQVAR 141
             N  D     + +  SPASLSESLKAFFG  LGSES LP+FELLQVPKLR+EAC+QVAR
Sbjct: 595 AGNAADGLRLAEIQDTSPASLSESLKAFFGLALGSESSLPEFELLQVPKLRSEACIQVAR 654

BLAST of CsGy4G016700 vs. TrEMBL
Match: tr|A0A2I4E5B9|A0A2I4E5B9_9ROSI (conserved oligomeric Golgi complex subunit 6 OS=Juglans regia OX=51240 GN=LOC108986428 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.5e-29
Identity = 94/214 (43.93%), Postives = 115/214 (53.74%), Query Frame = 0

Query: 1   MCEQATEIRKSKGSGLISRRGRTTSGSGQNSKSSVDALLSQSSPALASQVGMT-----IF 60
           MCEQA E  KSKG+   SRR R +S +GQ SKSSVDA+LS SS A +SQ   T     I 
Sbjct: 473 MCEQAAEAHKSKGANYSSRRSRLSSDAGQMSKSSVDAILSNSSSAPSSQNNETPSKIFII 532

Query: 61  SCLS--------------------------------------MGQCNGMDRDSRH----- 120
           +CLS                                      +G+C G+ +   H     
Sbjct: 533 NCLSAIQQPLYGHEVAAEYVKNLRAMIDNHLRILVEKEVDSFLGRC-GLSQKMHHFHSSL 592

Query: 121 ---------------VSPASLSESLKAFFGHVLGSESFLPKFELLQVPKLRTEACVQVAR 152
                           SPASLS+ LKAFFG VLGSE+ LP+FE +QVPKLR+EAC+QVAR
Sbjct: 593 NKEAGNWAPLAELEETSPASLSDCLKAFFGLVLGSETSLPEFEQMQVPKLRSEACIQVAR 652

BLAST of CsGy4G016700 vs. TrEMBL
Match: tr|A0A2N9HPK3|A0A2N9HPK3_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS41787 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 5.0e-28
Identity = 93/216 (43.06%), Postives = 114/216 (52.78%), Query Frame = 0

Query: 1   MCEQATEIRKSKGSGLISRRGRTTSGSGQNSKSSVDALLSQSSPALASQVGMT-----IF 60
           MCEQA E  KSKGSG  SRR R  S SG  SKSSVDA+LS SS   +SQ   T     + 
Sbjct: 495 MCEQAAEAHKSKGSGYSSRRSRMNSDSGHISKSSVDAILSSSSSTPSSQNNETPSKIFLI 554

Query: 61  SCLS--------------------------------------MGQC----------NGMD 120
           +CLS                                      + +C          N ++
Sbjct: 555 NCLSSIQQPLYGHEVAAEYVKNLGAMIDNHMRVLVEKEVEAILRRCGLSQKMLHFHNSLN 614

Query: 121 RDS------------RHVSPASLSESLKAFFGHVLGSESFLPKFELLQVPKLRTEACVQV 152
           +++               +PASLSESLKAFFG +LGSES LP+FE +QVPKLR+EAC+QV
Sbjct: 615 KEAGNTITRSPLAELEDTTPASLSESLKAFFGLILGSESSLPEFEQMQVPKLRSEACIQV 674

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN54536.12.6e-4495.83hypothetical protein Csa_4G358740 [Cucumis sativus][more]
XP_022941125.11.3e-3549.52conserved oligomeric Golgi complex subunit 6 [Cucurbita moschata][more]
XP_023525183.11.3e-3549.52conserved oligomeric Golgi complex subunit 6 [Cucurbita pepo subsp. pepo][more]
XP_022980951.12.9e-3550.00conserved oligomeric Golgi complex subunit 6 [Cucurbita maxima][more]
XP_004142643.13.7e-3552.22PREDICTED: conserved oligomeric Golgi complex subunit 6 [Cucumis sativus] >KGN54... [more]
Match NameE-valueIdentityDescription
AT1G31780.12.1e-2439.81Conserved oligomeric complex COG6 (InterPro:IPR010490)[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0L353|A0A0A0L353_CUCSA1.7e-4495.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G358740 PE=4 SV=1[more]
tr|A0A0A0L1U3|A0A0A0L1U3_CUCSA2.5e-3552.22Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G358700 PE=4 SV=1[more]
tr|A0A1S3BAN8|A0A1S3BAN8_CUCME3.2e-3552.22conserved oligomeric Golgi complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC10348... [more]
tr|A0A2I4E5B9|A0A2I4E5B9_9ROSI3.5e-2943.93conserved oligomeric Golgi complex subunit 6 OS=Juglans regia OX=51240 GN=LOC108... [more]
tr|A0A2N9HPK3|A0A2N9HPK3_FAGSY5.0e-2843.06Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS41787 PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006891intra-Golgi vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0017119Golgi transport complex
Vocabulary: INTERPRO
TermDefinition
IPR010490COG6
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006891 intra-Golgi vesicle-mediated transport
cellular_component GO:0017119 Golgi transport complex
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G016700.1CsGy4G016700.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010490Conserved oligomeric Golgi complex subunit 6PFAMPF06419COG6coord: 32..143
e-value: 5.0E-12
score: 44.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..34