CsGy2G013240.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G013240.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	auxin transporter-like protein 2
Location	Chr2 : 13010050 .. 13011327 (-)
Sequence length	624

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATGGCGGAGGCAGCTGCCGAGACGACGACGACAATGACAACGACAACAGTGATAGTTGGGAAGAATAGTAATCATAACAATAATGAGCCAACCAACGCGAAAACGAAGCTCTCGAAGCTGTTTTGGCATGGGGTTCAGGTTATGATGCTTGGTTCAGTTGTGCTTCAAACCAGGTAAATTATTATAAGGACCCTAATCAATTGAATGCTGATTATAGTAATATGGGTTTTGAATTTGGGTTTTTAATGATGATGAACAGGTTGCTCAAGTTCTTCTTACATTGCCATATTCATTTTCTCAAATGGGAATGGTTTCTGGAATTGTTCTTCAGCTGTTGTATGGATTGATGGGAAGTTGGACAGCTTATCTTATTACTTCACTTTATCTTGAATATAAACTAAGGAAACAGACTCAAAAACCTCAATACTTTACAAATCATGTCATTCAGGTCTCAACACTCTTCTCTTTAGACAGATTCTCCAGAAGTCATTTTCCTTCCCAATTAATAATAATAATATTACAACTTAAGCTTTAGGTTAAACGTTAAACAATACAATTTTGTTGTTATGATGATAATACAGTGGTTTGAGGTTCTAGAGGGGCTACTAGGGAGGCGATGGAGGAACGTGGGACTAGTGTTCAATTGCACGTTTTTGTTATTCGGGTCAGTGATCCAACTAATAGCATGTGCAAGGTAAGATGATGAATAGTATGGAAATTAGTTAAATCTTAACATATTGATATCATTATCAATTAATATTGTGGAGTAAAACAATATTTATATATATTTTGGTGTGTAGCAACATATATTACATAAATGAGAAGATTGAGAAGAGGACATGGACATACATCTTTGGAGCATGCTGTGCAACAACTGTGTTTGTTCCTTCTTTTCATAATTACAGAATTTGGTCTTTTTTGGGTCTTGCAATGACCACTTACACTGCTTGGTATCTTGCCATTGCCTCCTTCCTTCATGGCCAGGTAAATGCTATCAATATACCAAAATATCATACAGTTTATAGACCACTTGCTATCATCTATCGATCTGTATGATAATAAACACAAAGATGGTCCTATATTTCATAGATAGATTGCAGTAGTTACTATGTCTGTAAATATTTTGAAAAAAAATGTGATTTAAAATAAGGTTTGGTGGAACACATTTAGGTTGAAGGAGTGAAACACTCGGGTCCGACCAAGATGGTCCTATACTTCACAGGGGCCACTAACATTCTGTACACATTTGGGGGACATGCCGTCACTGTGTAA

mRNA sequence

ATGGAGATGGCGGAGGCAGCTGCCGAGACGACGACGACAATGACAACGACAACAGTGATAGTTGGGAAGAATAGTAATCATAACAATAATGAGCCAACCAACGCGAAAACGAAGCTCTCGAAGCTGTTTTGGCATGGGGTTCAGGTTATGATGCTTGGTTCAGTTGTGCTTCAAACCAGGTTAAACGTTAAACAATACAATTTTGTTGTTATGATGATAATACAGTGGTTTGAGGTTCTAGAGGGGCTACTAGGGAGGCGATGGAGGAACGTGGGACTAGTGTTCAATTGCACGTTTTTGTTATTCGGGTCAGTGATCCAACTAATAGCATGTGCAAGCAACATATATTACATAAATGAGAAGATTGAGAAGAGGACATGGACATACATCTTTGGAGCATGCTGTGCAACAACTGTGTTTGTTCCTTCTTTTCATAATTACAGAATTTGGTCTTTTTTGGGTCTTGCAATGACCACTTACACTGCTTGGTATCTTGCCATTGCCTCCTTCCTTCATGGCCAGGTTGAAGGAGTGAAACACTCGGGTCCGACCAAGATGGTCCTATACTTCACAGGGGCCACTAACATTCTGTACACATTTGGGGGACATGCCGTCACTGTGTAA

Coding sequence (CDS)

ATGGAGATGGCGGAGGCAGCTGCCGAGACGACGACGACAATGACAACGACAACAGTGATAGTTGGGAAGAATAGTAATCATAACAATAATGAGCCAACCAACGCGAAAACGAAGCTCTCGAAGCTGTTTTGGCATGGGGTTCAGGTTATGATGCTTGGTTCAGTTGTGCTTCAAACCAGGTTAAACGTTAAACAATACAATTTTGTTGTTATGATGATAATACAGTGGTTTGAGGTTCTAGAGGGGCTACTAGGGAGGCGATGGAGGAACGTGGGACTAGTGTTCAATTGCACGTTTTTGTTATTCGGGTCAGTGATCCAACTAATAGCATGTGCAAGCAACATATATTACATAAATGAGAAGATTGAGAAGAGGACATGGACATACATCTTTGGAGCATGCTGTGCAACAACTGTGTTTGTTCCTTCTTTTCATAATTACAGAATTTGGTCTTTTTTGGGTCTTGCAATGACCACTTACACTGCTTGGTATCTTGCCATTGCCTCCTTCCTTCATGGCCAGGTTGAAGGAGTGAAACACTCGGGTCCGACCAAGATGGTCCTATACTTCACAGGGGCCACTAACATTCTGTACACATTTGGGGGACATGCCGTCACTGTGTAA

Protein sequence

MEMAEAAAETTTTMTTTTVIVGKNSNHNNNEPTNAKTKLSKLFWHGVQVMMLGSVVLQTRLNVKQYNFVVMMIIQWFEVLEGLLGRRWRNVGLVFNCTFLLFGSVIQLIACASNIYYINEKIEKRTWTYIFGACCATTVFVPSFHNYRIWSFLGLAMTTYTAWYLAIASFLHGQVEGVKHSGPTKMVLYFTGATNILYTFGGHAVTV

Homology

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BLAST of CsGy2G013240.1 vs. NCBI nr
Match: XP_004147069.2 (PREDICTED: auxin transporter-like protein 2 [Cucumis sativus] >KGN61915.1 hypothetical protein Csa_2G264590 [Cucumis sativus])

HSP 1 Score: 295.0 bits (754), Expect = 1.9e-76
Identity = 154/223 (69.06%), Postives = 161/223 (72.20%), Query Frame = 0


Query: 33  TNAKTKLSKLFWHG--------------------------VQVMMLGSVVLQ-------- 92
           TNAKTKLSKLFWHG                           Q+ M+  +VLQ        
Sbjct: 33  TNAKTKLSKLFWHGGSGYDAWFSCASNQVAQVLLTLPYSFSQMGMVSGIVLQLLYGLMGS 92

Query: 93  --------------TRLNVKQYNFVVMMIIQWFEVLEGLLGRRWRNVGLVFNCTFLLFGS 152
                          R   ++  +    +IQWFEVLEGLLGRRWRNVGLVFNCTFLLFGS
Sbjct: 93  WTAYLITSLYLEYKLRKQTQKPQYFTNHVIQWFEVLEGLLGRRWRNVGLVFNCTFLLFGS 152

Query: 153 VIQLIACASNIYYINEKIEKRTWTYIFGACCATTVFVPSFHNYRIWSFLGLAMTTYTAWY 208
           VIQLIACASNIYYINEKIEKRTWTYIFGACCATTVFVPSFHNYRIWSFLGLAMTTYTAWY
Sbjct: 153 VIQLIACASNIYYINEKIEKRTWTYIFGACCATTVFVPSFHNYRIWSFLGLAMTTYTAWY 212

[Close]

BLAST of CsGy2G013240.1 vs. NCBI nr
Match: AVN97812.1 (auxin transporter protein, partial [Cucumis sativus])

HSP 1 Score: 295.0 bits (754), Expect = 1.9e-76
Identity = 154/223 (69.06%), Postives = 161/223 (72.20%), Query Frame = 0


Query: 33  TNAKTKLSKLFWHG--------------------------VQVMMLGSVVLQ-------- 92
           TNAKTKLSKLFWHG                           Q+ M+  +VLQ        
Sbjct: 33  TNAKTKLSKLFWHGGSGYDAWFSCASNQVAQVLLTLPYSFSQMGMVSGIVLQLLYGLMGS 92

Query: 93  --------------TRLNVKQYNFVVMMIIQWFEVLEGLLGRRWRNVGLVFNCTFLLFGS 152
                          R   ++  +    +IQWFEVLEGLLGRRWRNVGLVFNCTFLLFGS
Sbjct: 93  WTAYLITSLYLEYKLRKQTQKPQYFTNHVIQWFEVLEGLLGRRWRNVGLVFNCTFLLFGS 152

Query: 153 VIQLIACASNIYYINEKIEKRTWTYIFGACCATTVFVPSFHNYRIWSFLGLAMTTYTAWY 208
           VIQLIACASNIYYINEKIEKRTWTYIFGACCATTVFVPSFHNYRIWSFLGLAMTTYTAWY
Sbjct: 153 VIQLIACASNIYYINEKIEKRTWTYIFGACCATTVFVPSFHNYRIWSFLGLAMTTYTAWY 212

[Close]

BLAST of CsGy2G013240.1 vs. NCBI nr
Match: XP_008457668.1 (PREDICTED: auxin transporter-like protein 2 [Cucumis melo])

HSP 1 Score: 292.4 bits (747), Expect = 1.2e-75
Identity = 153/223 (68.61%), Postives = 161/223 (72.20%), Query Frame = 0


Query: 33  TNAKTKLSKLFWHG--------------------------VQVMMLGSVVLQ-------- 92
           T+A TKLSKLFWHG                           QV M+  +VLQ        
Sbjct: 33  TDAMTKLSKLFWHGGSGYDAWFSCASNQVAQVLLTLPYSFSQVGMVSGIVLQLLYGLMGS 92

Query: 93  --------------TRLNVKQYNFVVMMIIQWFEVLEGLLGRRWRNVGLVFNCTFLLFGS 152
                          R   ++ ++    +IQWFEVLEGLLGRRWRNVGLVFNCTFLLFGS
Sbjct: 93  WTAYLITSLYLEYRLRKQTQKPHYFTNHVIQWFEVLEGLLGRRWRNVGLVFNCTFLLFGS 152

Query: 153 VIQLIACASNIYYINEKIEKRTWTYIFGACCATTVFVPSFHNYRIWSFLGLAMTTYTAWY 208
           VIQLIACASNIYYINEKIEKRTWTYIFGACCATTVFVPSFHNYRIWSFLGLAMTTYTAWY
Sbjct: 153 VIQLIACASNIYYINEKIEKRTWTYIFGACCATTVFVPSFHNYRIWSFLGLAMTTYTAWY 212

[Close]

BLAST of CsGy2G013240.1 vs. NCBI nr
Match: XP_023534043.1 (auxin transporter-like protein 5 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 279.6 bits (714), Expect = 8.4e-72
Identity = 143/207 (69.08%), Postives = 158/207 (76.33%), Query Frame = 0


Query: 34  NAKTKLSKLFWHG------------VQVMMLGSVVLQ--------------TRLNV---- 93
           + KTKLSKLFWHG             Q+ M+  ++LQ              T L +    
Sbjct: 10  DVKTKLSKLFWHGGSAYDAWFSCASNQLGMVSGILLQLFYGLMGSWTAYLITSLYLEYRL 69

Query: 94  ---KQYNFVVMMIIQWFEVLEGLLGRRWRNVGLVFNCTFLLFGSVIQLIACASNIYYINE 153
              +Q       +IQWFEVL+GLLG+RWRNVGL FNCTFLLFGSVIQLIACASNIYYINE
Sbjct: 70  RKERQKAEFRNHVIQWFEVLDGLLGKRWRNVGLAFNCTFLLFGSVIQLIACASNIYYINE 129

Query: 154 KIEKRTWTYIFGACCATTVFVPSFHNYRIWSFLGLAMTTYTAWYLAIASFLHGQVEGVKH 208
           K++KRTWTYIFGACCATTVF+PSFHNYRIWSFLGLAMTTYTAWYL +ASFLHGQVEGVKH
Sbjct: 130 KLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLAMTTYTAWYLTMASFLHGQVEGVKH 189

[Close]

BLAST of CsGy2G013240.1 vs. NCBI nr
Match: XP_022146211.1 (auxin transporter-like protein 5 [Momordica charantia])

HSP 1 Score: 278.1 bits (710), Expect = 2.4e-71
Identity = 144/223 (64.57%), Postives = 159/223 (71.30%), Query Frame = 0


Query: 33  TNAKTKLSKLFWHG--------------------------VQVMMLGSVVLQ-------- 92
           T+ KTKLSKLFWHG                           Q+ M+  ++LQ        
Sbjct: 27  TDVKTKLSKLFWHGGSAYDAWFSCASNQVAQVLLTLPYSFAQLGMVSGILLQLFYGLMGS 86

Query: 93  --------------TRLNVKQYNFVVMMIIQWFEVLEGLLGRRWRNVGLVFNCTFLLFGS 152
                         TR    + +F    +IQWFEVL+GLLG+RWRNVGL FNCTFLLFGS
Sbjct: 87  WTAYLITSLYLEYRTRKERHKTDF-RNHVIQWFEVLDGLLGKRWRNVGLAFNCTFLLFGS 146

Query: 153 VIQLIACASNIYYINEKIEKRTWTYIFGACCATTVFVPSFHNYRIWSFLGLAMTTYTAWY 208
           VIQLIACASNIYYIN+K++KRTWTYIFGACCATTVF+PSFHNYRIWSFLGLAMTTYTAWY
Sbjct: 147 VIQLIACASNIYYINDKLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLAMTTYTAWY 206

[Close]

BLAST of CsGy2G013240.1 vs. TAIR10
Match: AT2G21050.1 (like AUXIN RESISTANT 2)

HSP 1 Score: 264.2 bits (674), Expect = 6.6e-71
Identity = 125/153 (81.70%), Postives = 137/153 (89.54%), Query Frame = 0


Query: 55  VVLQTRLNVKQYNFVVMMIIQWFEVLEGLLGRRWRNVGLVFNCTFLLFGSVIQLIACASN 114
           V  +TR   ++ NF    +IQWFEVL+GLLG+ WRNVGL FNCTFLLFGSVIQLIACASN
Sbjct: 96  VEYRTRKEREKVNF-RNHVIQWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASN 155

Query: 115 IYYINEKIEKRTWTYIFGACCATTVFVPSFHNYRIWSFLGLAMTTYTAWYLAIASFLHGQ 174
           IYYIN+ ++KRTWTYIFGACCATTVF+PSFHNYRIWSFLGL MTTYTAWYL IAS LHGQ
Sbjct: 156 IYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYLTIASILHGQ 215

Query: 175 VEGVKHSGPTKMVLYFTGATNILYTFGGHAVTV 208
           VEGVKHSGP+K+VLYFTGATNILYTFGGHAVTV
Sbjct: 216 VEGVKHSGPSKLVLYFTGATNILYTFGGHAVTV 247

[Close]

BLAST of CsGy2G013240.1 vs. TAIR10
Match: AT1G77690.1 (like AUX1 3)

HSP 1 Score: 263.5 bits (672), Expect = 1.1e-70
Identity = 134/223 (60.09%), Postives = 154/223 (69.06%), Query Frame = 0


Query: 33  TNAKTKLSKLFWHG--------------------------VQVMMLGSVVLQ-------- 92
           ++ KTKLS  FWHG                           Q+ M+  ++ Q        
Sbjct: 30  SSTKTKLSNFFWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMMSGILFQLFYGLMGS 89

Query: 93  --------------TRLNVKQYNFVVMMIIQWFEVLEGLLGRRWRNVGLVFNCTFLLFGS 152
                         TR   ++++F    +IQWFEVL+GLLG+ WRN+GL+FNCTFLLFGS
Sbjct: 90  WTAYLISVLYVEYRTRKEREKFDF-RNHVIQWFEVLDGLLGKHWRNLGLIFNCTFLLFGS 149

Query: 153 VIQLIACASNIYYINEKIEKRTWTYIFGACCATTVFVPSFHNYRIWSFLGLAMTTYTAWY 208
           VIQLIACASNIYYIN+K++KRTWTYIFGACCATTVF+PSFHNYRIWSFLGLAMTTYT+WY
Sbjct: 150 VIQLIACASNIYYINDKLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLAMTTYTSWY 209

[Close]

BLAST of CsGy2G013240.1 vs. TAIR10
Match: AT2G38120.1 (Transmembrane amino acid transporter family protein)

HSP 1 Score: 258.5 bits (659), Expect = 3.6e-69
Identity = 117/135 (86.67%), Postives = 127/135 (94.07%), Query Frame = 0


Query: 73  IIQWFEVLEGLLGRRWRNVGLVFNCTFLLFGSVIQLIACASNIYYINEKIEKRTWTYIFG 132
           +IQWFEVL+GLLG  W+ +GL FNCTFLLFGSVIQLIACASNIYYIN+ ++KRTWTYIFG
Sbjct: 119 VIQWFEVLDGLLGSYWKALGLAFNCTFLLFGSVIQLIACASNIYYINDHLDKRTWTYIFG 178

Query: 133 ACCATTVFVPSFHNYRIWSFLGLAMTTYTAWYLAIASFLHGQVEGVKHSGPTKMVLYFTG 192
           ACCATTVF+PSFHNYRIWSFLGL MTTYTAWYLAIAS +HGQ EGVKHSGPTK+VLYFTG
Sbjct: 179 ACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIASIIHGQAEGVKHSGPTKLVLYFTG 238

Query: 193 ATNILYTFGGHAVTV 208
           ATNILYTFGGHAVTV
Sbjct: 239 ATNILYTFGGHAVTV 253

[Close]

BLAST of CsGy2G013240.1 vs. TAIR10
Match: AT5G01240.1 (like AUXIN RESISTANT 1)

HSP 1 Score: 258.1 bits (658), Expect = 4.7e-69
Identity = 117/135 (86.67%), Postives = 126/135 (93.33%), Query Frame = 0


Query: 73  IIQWFEVLEGLLGRRWRNVGLVFNCTFLLFGSVIQLIACASNIYYINEKIEKRTWTYIFG 132
           +IQWFEVL+GLLG  W+  GL FNCTFLLFGSVIQLIACASNIYYIN++++KRTWTYIFG
Sbjct: 125 VIQWFEVLDGLLGPYWKAAGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFG 184

Query: 133 ACCATTVFVPSFHNYRIWSFLGLAMTTYTAWYLAIASFLHGQVEGVKHSGPTKMVLYFTG 192
           ACCATTVF+PSFHNYRIWSFLGL MTTYTAWYL IASFLHGQ EGV HSGPTK+VLYFTG
Sbjct: 185 ACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIASFLHGQAEGVTHSGPTKLVLYFTG 244

Query: 193 ATNILYTFGGHAVTV 208
           ATNILYTFGGHAVTV
Sbjct: 245 ATNILYTFGGHAVTV 259

[Close]

BLAST of CsGy2G013240.1 vs. Swiss-Prot
Match: sp|Q9S836|LAX2_ARATH (Auxin transporter-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=LAX2 PE=2 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.2e-69
Identity = 125/153 (81.70%), Postives = 137/153 (89.54%), Query Frame = 0


Query: 55  VVLQTRLNVKQYNFVVMMIIQWFEVLEGLLGRRWRNVGLVFNCTFLLFGSVIQLIACASN 114
           V  +TR   ++ NF    +IQWFEVL+GLLG+ WRNVGL FNCTFLLFGSVIQLIACASN
Sbjct: 96  VEYRTRKEREKVNF-RNHVIQWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASN 155

Query: 115 IYYINEKIEKRTWTYIFGACCATTVFVPSFHNYRIWSFLGLAMTTYTAWYLAIASFLHGQ 174
           IYYIN+ ++KRTWTYIFGACCATTVF+PSFHNYRIWSFLGL MTTYTAWYL IAS LHGQ
Sbjct: 156 IYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYLTIASILHGQ 215

Query: 175 VEGVKHSGPTKMVLYFTGATNILYTFGGHAVTV 208
           VEGVKHSGP+K+VLYFTGATNILYTFGGHAVTV
Sbjct: 216 VEGVKHSGPSKLVLYFTGATNILYTFGGHAVTV 247

[Close]

BLAST of CsGy2G013240.1 vs. Swiss-Prot
Match: sp|Q9CA25|LAX3_ARATH (Auxin transporter-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=LAX3 PE=2 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 2.0e-69
Identity = 134/223 (60.09%), Postives = 154/223 (69.06%), Query Frame = 0


Query: 33  TNAKTKLSKLFWHG--------------------------VQVMMLGSVVLQ-------- 92
           ++ KTKLS  FWHG                           Q+ M+  ++ Q        
Sbjct: 30  SSTKTKLSNFFWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMMSGILFQLFYGLMGS 89

Query: 93  --------------TRLNVKQYNFVVMMIIQWFEVLEGLLGRRWRNVGLVFNCTFLLFGS 152
                         TR   ++++F    +IQWFEVL+GLLG+ WRN+GL+FNCTFLLFGS
Sbjct: 90  WTAYLISVLYVEYRTRKEREKFDF-RNHVIQWFEVLDGLLGKHWRNLGLIFNCTFLLFGS 149

Query: 153 VIQLIACASNIYYINEKIEKRTWTYIFGACCATTVFVPSFHNYRIWSFLGLAMTTYTAWY 208
           VIQLIACASNIYYIN+K++KRTWTYIFGACCATTVF+PSFHNYRIWSFLGLAMTTYT+WY
Sbjct: 150 VIQLIACASNIYYINDKLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLAMTTYTSWY 209

[Close]

BLAST of CsGy2G013240.1 vs. Swiss-Prot
Match: sp|Q8L883|LAX5_MEDTR (Auxin transporter-like protein 5 OS=Medicago truncatula OX=3880 GN=LAX5 PE=2 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 1.0e-68
Identity = 123/153 (80.39%), Postives = 136/153 (88.89%), Query Frame = 0


Query: 55  VVLQTRLNVKQYNFVVMMIIQWFEVLEGLLGRRWRNVGLVFNCTFLLFGSVIQLIACASN 114
           V  +TR   ++ NF    +IQWFEVL+GLLG+ WRNVGL FNCTFLLFGSVIQLIACASN
Sbjct: 98  VEYRTRKEREKVNF-RSHVIQWFEVLDGLLGKHWRNVGLGFNCTFLLFGSVIQLIACASN 157

Query: 115 IYYINEKIEKRTWTYIFGACCATTVFVPSFHNYRIWSFLGLAMTTYTAWYLAIASFLHGQ 174
           IYYIN+ ++KRTWTYIFGACCATTVF+PSFHNYRIWSFLGL MTTYTAWYL IA+ LHGQ
Sbjct: 158 IYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLVMTTYTAWYLTIAAVLHGQ 217

Query: 175 VEGVKHSGPTKMVLYFTGATNILYTFGGHAVTV 208
           VEGVKHSGP K++LYFTGATNILYTFGGHAVTV
Sbjct: 218 VEGVKHSGPNKIILYFTGATNILYTFGGHAVTV 249

[Close]

BLAST of CsGy2G013240.1 vs. Swiss-Prot
Match: sp|Q7XGU4|LAX13_ORYSJ (Auxin transporter-like protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0147400 PE=2 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.3e-68
Identity = 117/135 (86.67%), Postives = 127/135 (94.07%), Query Frame = 0


Query: 73  IIQWFEVLEGLLGRRWRNVGLVFNCTFLLFGSVIQLIACASNIYYINEKIEKRTWTYIFG 132
           +IQWFEVL+GLLGR WRNVGL FNCTFLLFGSVIQLI CASNIYYIN+ ++KRTWTYIFG
Sbjct: 134 VIQWFEVLDGLLGRHWRNVGLAFNCTFLLFGSVIQLIGCASNIYYINDHLDKRTWTYIFG 193

Query: 133 ACCATTVFVPSFHNYRIWSFLGLAMTTYTAWYLAIASFLHGQVEGVKHSGPTKMVLYFTG 192
           ACCATTVF+PSFHNYRIWSFLGL MTTYTAWY+A+AS +HGQVEGV HSGPT +VLYFTG
Sbjct: 194 ACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYIAVASLIHGQVEGVAHSGPTSIVLYFTG 253

Query: 193 ATNILYTFGGHAVTV 208
           ATNILYTFGGHAVTV
Sbjct: 254 ATNILYTFGGHAVTV 268

[Close]

BLAST of CsGy2G013240.1 vs. Swiss-Prot
Match: sp|Q9FEL6|LAX3_MEDTR (Auxin transporter-like protein 3 OS=Medicago truncatula OX=3880 GN=LAX3 PE=2 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 2.2e-68
Identity = 117/135 (86.67%), Postives = 127/135 (94.07%), Query Frame = 0


Query: 73  IIQWFEVLEGLLGRRWRNVGLVFNCTFLLFGSVIQLIACASNIYYINEKIEKRTWTYIFG 132
           +IQWFEVL+GLLG+ WRN+GL FNCTFLLFGSVIQLIACASNIYYIN+ ++KRTWTYIFG
Sbjct: 112 VIQWFEVLDGLLGKHWRNLGLFFNCTFLLFGSVIQLIACASNIYYINDHLDKRTWTYIFG 171

Query: 133 ACCATTVFVPSFHNYRIWSFLGLAMTTYTAWYLAIASFLHGQVEGVKHSGPTKMVLYFTG 192
           ACCATTVF+PSFHNYRIWSFLGL MTTYTAWY+ IAS LHGQ E VKHSGPTK+VLYFTG
Sbjct: 172 ACCATTVFIPSFHNYRIWSFLGLVMTTYTAWYMTIASILHGQAEDVKHSGPTKLVLYFTG 231

Query: 193 ATNILYTFGGHAVTV 208
           ATNILYTFGGHAVTV
Sbjct: 232 ATNILYTFGGHAVTV 246

[Close]

BLAST of CsGy2G013240.1 vs. TrEMBL
Match: tr|A0A2P1JH91|A0A2P1JH91_CUCSA (Auxin transporter protein (Fragment) OS=Cucumis sativus OX=3659 GN=ns PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 1.3e-76
Identity = 154/223 (69.06%), Postives = 161/223 (72.20%), Query Frame = 0


Query: 33  TNAKTKLSKLFWHG--------------------------VQVMMLGSVVLQ-------- 92
           TNAKTKLSKLFWHG                           Q+ M+  +VLQ        
Sbjct: 33  TNAKTKLSKLFWHGGSGYDAWFSCASNQVAQVLLTLPYSFSQMGMVSGIVLQLLYGLMGS 92

Query: 93  --------------TRLNVKQYNFVVMMIIQWFEVLEGLLGRRWRNVGLVFNCTFLLFGS 152
                          R   ++  +    +IQWFEVLEGLLGRRWRNVGLVFNCTFLLFGS
Sbjct: 93  WTAYLITSLYLEYKLRKQTQKPQYFTNHVIQWFEVLEGLLGRRWRNVGLVFNCTFLLFGS 152

Query: 153 VIQLIACASNIYYINEKIEKRTWTYIFGACCATTVFVPSFHNYRIWSFLGLAMTTYTAWY 208
           VIQLIACASNIYYINEKIEKRTWTYIFGACCATTVFVPSFHNYRIWSFLGLAMTTYTAWY
Sbjct: 153 VIQLIACASNIYYINEKIEKRTWTYIFGACCATTVFVPSFHNYRIWSFLGLAMTTYTAWY 212

[Close]

BLAST of CsGy2G013240.1 vs. TrEMBL
Match: tr|A0A0A0LJ42|A0A0A0LJ42_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G264590 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 1.3e-76
Identity = 154/223 (69.06%), Postives = 161/223 (72.20%), Query Frame = 0


Query: 33  TNAKTKLSKLFWHG--------------------------VQVMMLGSVVLQ-------- 92
           TNAKTKLSKLFWHG                           Q+ M+  +VLQ        
Sbjct: 33  TNAKTKLSKLFWHGGSGYDAWFSCASNQVAQVLLTLPYSFSQMGMVSGIVLQLLYGLMGS 92

Query: 93  --------------TRLNVKQYNFVVMMIIQWFEVLEGLLGRRWRNVGLVFNCTFLLFGS 152
                          R   ++  +    +IQWFEVLEGLLGRRWRNVGLVFNCTFLLFGS
Sbjct: 93  WTAYLITSLYLEYKLRKQTQKPQYFTNHVIQWFEVLEGLLGRRWRNVGLVFNCTFLLFGS 152

Query: 153 VIQLIACASNIYYINEKIEKRTWTYIFGACCATTVFVPSFHNYRIWSFLGLAMTTYTAWY 208
           VIQLIACASNIYYINEKIEKRTWTYIFGACCATTVFVPSFHNYRIWSFLGLAMTTYTAWY
Sbjct: 153 VIQLIACASNIYYINEKIEKRTWTYIFGACCATTVFVPSFHNYRIWSFLGLAMTTYTAWY 212

[Close]

BLAST of CsGy2G013240.1 vs. TrEMBL
Match: tr|A0A1S3C601|A0A1S3C601_CUCME (auxin transporter-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103497313 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 8.3e-76
Identity = 153/223 (68.61%), Postives = 161/223 (72.20%), Query Frame = 0


Query: 33  TNAKTKLSKLFWHG--------------------------VQVMMLGSVVLQ-------- 92
           T+A TKLSKLFWHG                           QV M+  +VLQ        
Sbjct: 33  TDAMTKLSKLFWHGGSGYDAWFSCASNQVAQVLLTLPYSFSQVGMVSGIVLQLLYGLMGS 92

Query: 93  --------------TRLNVKQYNFVVMMIIQWFEVLEGLLGRRWRNVGLVFNCTFLLFGS 152
                          R   ++ ++    +IQWFEVLEGLLGRRWRNVGLVFNCTFLLFGS
Sbjct: 93  WTAYLITSLYLEYRLRKQTQKPHYFTNHVIQWFEVLEGLLGRRWRNVGLVFNCTFLLFGS 152

Query: 153 VIQLIACASNIYYINEKIEKRTWTYIFGACCATTVFVPSFHNYRIWSFLGLAMTTYTAWY 208
           VIQLIACASNIYYINEKIEKRTWTYIFGACCATTVFVPSFHNYRIWSFLGLAMTTYTAWY
Sbjct: 153 VIQLIACASNIYYINEKIEKRTWTYIFGACCATTVFVPSFHNYRIWSFLGLAMTTYTAWY 212

[Close]

BLAST of CsGy2G013240.1 vs. TrEMBL
Match: tr|B9RJ49|B9RJ49_RICCO (Amino acid transporter, putative OS=Ricinus communis OX=3988 GN=RCOM_1031400 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 8.0e-71
Identity = 130/175 (74.29%), Postives = 146/175 (83.43%), Query Frame = 0


Query: 33  TNAKTKLSKLFWHGVQVMMLGSVVLQTRLNVKQYNFVVMMIIQWFEVLEGLLGRRWRNVG 92
           ++ K KLS  FWHG  V    +   + +++ + +      +IQWFEVL+GLLG+ WRN G
Sbjct: 25  SSTKGKLSNFFWHGGSVYDAWTRKEREKVDFRNH------VIQWFEVLDGLLGKHWRNAG 84

Query: 93  LVFNCTFLLFGSVIQLIACASNIYYINEKIEKRTWTYIFGACCATTVFVPSFHNYRIWSF 152
           L FNCTFLLFGSVIQLIACASNIYYIN+ ++KRTWTYIFGACCATTVF+PSFHNYRIWSF
Sbjct: 85  LFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSF 144

Query: 153 LGLAMTTYTAWYLAIASFLHGQVEGVKHSGPTKMVLYFTGATNILYTFGGHAVTV 208
           LGL MTTYTAWYL IASFLHGQVEGVKHSGP KMVLYFTGATNILYTFGGHAVTV
Sbjct: 145 LGLMMTTYTAWYLTIASFLHGQVEGVKHSGPAKMVLYFTGATNILYTFGGHAVTV 193

[Close]

BLAST of CsGy2G013240.1 vs. TrEMBL
Match: tr|A0A2I0I3N8|A0A2I0I3N8_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_041152 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 8.8e-70
Identity = 131/174 (75.29%), Postives = 148/174 (85.06%), Query Frame = 0


Query: 36  KTKLSKLFWHGVQV--MMLGSVVLQTRLNVKQYNFVVMMIIQWFEVLEGLLGRRWRNVGL 95
           K +LS+LFWHG  V    +  V  +TR   ++ +F    +IQWFEVL+GLLG+ WRN+GL
Sbjct: 28  KGRLSRLFWHGGSVYDACVLYVEYRTRKERQKVDF-RNHVIQWFEVLDGLLGKHWRNIGL 87

Query: 96  VFNCTFLLFGSVIQLIACASNIYYINEKIEKRTWTYIFGACCATTVFVPSFHNYRIWSFL 155
            FNCTFLLFGSVIQLIACASNIYYIN+ ++KRTWTYIFGACCATTVF+PSFHNYRIWSFL
Sbjct: 88  FFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL 147

Query: 156 GLAMTTYTAWYLAIASFLHGQVEGVKHSGPTKMVLYFTGATNILYTFGGHAVTV 208
           GL MTTYTAWYL IAS LHGQ+EGVKHSGP+ MVLYFTGATNILYTFGGHAVTV
Sbjct: 148 GLLMTTYTAWYLTIASLLHGQIEGVKHSGPSSMVLYFTGATNILYTFGGHAVTV 200

The following BLAST results are available for this feature:

BLAST of CsGy2G013240.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147069.2	1.9e-76	69.06	PREDICTED: auxin transporter-like protein 2 [Cucumis sativus] >KGN61915.1 hypoth...	[more]
AVN97812.1	1.9e-76	69.06	auxin transporter protein, partial [Cucumis sativus]	[more]
XP_008457668.1	1.2e-75	68.61	PREDICTED: auxin transporter-like protein 2 [Cucumis melo]	[more]
XP_023534043.1	8.4e-72	69.08	auxin transporter-like protein 5 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022146211.1	2.4e-71	64.57	auxin transporter-like protein 5 [Momordica charantia]	[more]

BLAST of CsGy2G013240.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G21050.1	6.6e-71	81.70	like AUXIN RESISTANT 2	[more]
AT1G77690.1	1.1e-70	60.09	like AUX1 3	[more]
AT2G38120.1	3.6e-69	86.67	Transmembrane amino acid transporter family protein	[more]
AT5G01240.1	4.7e-69	86.67	like AUXIN RESISTANT 1	[more]

BLAST of CsGy2G013240.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9S836\|LAX2_ARATH	1.2e-69	81.70	Auxin transporter-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=LAX2 PE=2 SV...	[more]
sp\|Q9CA25\|LAX3_ARATH	2.0e-69	60.09	Auxin transporter-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=LAX3 PE=2 SV...	[more]
sp\|Q8L883\|LAX5_MEDTR	1.0e-68	80.39	Auxin transporter-like protein 5 OS=Medicago truncatula OX=3880 GN=LAX5 PE=2 SV=...	[more]
sp\|Q7XGU4\|LAX13_ORYSJ	1.3e-68	86.67	Auxin transporter-like protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os1...	[more]
sp\|Q9FEL6\|LAX3_MEDTR	2.2e-68	86.67	Auxin transporter-like protein 3 OS=Medicago truncatula OX=3880 GN=LAX3 PE=2 SV=...	[more]

BLAST of CsGy2G013240.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P1JH91\|A0A2P1JH91_CUCSA	1.3e-76	69.06	Auxin transporter protein (Fragment) OS=Cucumis sativus OX=3659 GN=ns PE=4 SV=1	[more]
tr\|A0A0A0LJ42\|A0A0A0LJ42_CUCSA	1.3e-76	69.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G264590 PE=4 SV=1	[more]
tr\|A0A1S3C601\|A0A1S3C601_CUCME	8.3e-76	68.61	auxin transporter-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103497313 PE=4 SV...	[more]
tr\|B9RJ49\|B9RJ49_RICCO	8.0e-71	74.29	Amino acid transporter, putative OS=Ricinus communis OX=3988 GN=RCOM_1031400 PE=...	[more]
tr\|A0A2I0I3N8\|A0A2I0I3N8_PUNGR	8.8e-70	75.29	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_041152 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR013057	AA_transpt_TM

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0003333	amino acid transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0015171	amino acid transmembrane transporter activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy2G013240	CsGy2G013240	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy2G013240.1	CsGy2G013240.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy2G013240.1.CDS.4	CsGy2G013240.1.CDS.4	CDS
CsGy2G013240.1.CDS.3	CsGy2G013240.1.CDS.3	CDS
CsGy2G013240.1.CDS.2	CsGy2G013240.1.CDS.2	CDS
CsGy2G013240.1.CDS.1	CsGy2G013240.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy2G013240.1.exon.4	CsGy2G013240.1.exon.4	exon
CsGy2G013240.1.exon.3	CsGy2G013240.1.exon.3	exon
CsGy2G013240.1.exon.2	CsGy2G013240.1.exon.2	exon
CsGy2G013240.1.exon.1	CsGy2G013240.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013057	Amino acid transporter, transmembrane domain	PFAM	PF01490	Aa_trans	coord: 73..206 e-value: 1.2E-18 score: 67.0
None	No IPR available	PANTHER	PTHR22950	AMINO ACID TRANSPORTER	coord: 69..207
None	No IPR available	PANTHER	PTHR22950:SF317	SUBFAMILY NOT NAMED	coord: 69..207