Cp4.1LG02g07780.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG02g07780.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	conserved peptide upstream open reading frame 5
Location	Cp4.1LG02 : 522765 .. 523739 (-)
Sequence length	537

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCCGGTTCTCAGTGAAATCCTCCGTTCCGGTTTCACCATAAGCTCATCTCTCCGCCGCCGCACCCACTTAGTTCAGTCCTTCTCCGTTGTATTCCTCCACTGGTTCTACGTCTTCTCATGAACCGTTTCCCCTCACTCCCACTCTAATATATATATATATATATATATATATATTCCCTAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATTATATATCAATTATATAATAGTTATTTATATTATGGGGTGTTGTAGTGGGAATTCTTCAGGTTCGATATCTCAGATTGGGGTTCAGAACCAGAGCTCTGGTTCGGAAGAGGAGCTGAGGCAATTGATGGACCAGAGAAAAAGAAGGAGAATGCAATCGAACCGGGAATCGGCGCGGCGGTCGAGGATGCGGAAACAGCAGCACTTGGACGGGCTGATGGCGCAGGTGGGCCAATTGAGGGAAAATAAAAACCAAATGATTTCCAGAATTAATCTCACAACCCATCTTTTTCTCAACGTTGAAGCTGAAAACTCTGTTTTGAGAGCTCAGATTCTGGAACTTACTCATAGATTAGACTCCCTAAACCGGATCTTATCTCACATCAACAACAACAACAACGACAAAGATGAAGAACAACATATTTTTCTTCAAAACTTCGATGATTACGATTATCATTATGATTTTGATTTTGATTTTGATTTTGATCATAACCCATCATTCCTCAACTCATTTCTAAGCCAGCAACCCCCCATTGTGGCTTCTGCTGATCATCACGTGCTTCACTGCTGA

mRNA sequence

ATGTCTCCGGTTCTCAGTGAAATCCTCCGTTCCGGTTTCACCATAAGCTCATCTCTCCGCCGCCGCACCCACTTAGTTCAGTCCTTCTCCGTTGTATTCCTCCACTGGTTCGATATCTCAGATTGGGGTTCAGAACCAGAGCTCTGGTTCGGAAGAGGAGCTGAGGCAATTGATGGACCAGAGAAAAAGAAGGAGAATGCAATCGAACCGGGAATCGGCGCGGCGGTCGAGGATGCGGAAACAGCAGCACTTGGACGGGCTGATGGCGCAGCTGAAAACTCTGTTTTGAGAGCTCAGATTCTGGAACTTACTCATAGATTAGACTCCCTAAACCGGATCTTATCTCACATCAACAACAACAACAACGACAAAGATGAAGAACAACATATTTTTCTTCAAAACTTCGATGATTACGATTATCATTATGATTTTGATTTTGATTTTGATTTTGATCATAACCCATCATTCCTCAACTCATTTCTAAGCCAGCAACCCCCCATTGTGGCTTCTGCTGATCATCACGTGCTTCACTGCTGA

Coding sequence (CDS)

ATGTCTCCGGTTCTCAGTGAAATCCTCCGTTCCGGTTTCACCATAAGCTCATCTCTCCGCCGCCGCACCCACTTAGTTCAGTCCTTCTCCGTTGTATTCCTCCACTGGTTCGATATCTCAGATTGGGGTTCAGAACCAGAGCTCTGGTTCGGAAGAGGAGCTGAGGCAATTGATGGACCAGAGAAAAAGAAGGAGAATGCAATCGAACCGGGAATCGGCGCGGCGGTCGAGGATGCGGAAACAGCAGCACTTGGACGGGCTGATGGCGCAGCTGAAAACTCTGTTTTGAGAGCTCAGATTCTGGAACTTACTCATAGATTAGACTCCCTAAACCGGATCTTATCTCACATCAACAACAACAACAACGACAAAGATGAAGAACAACATATTTTTCTTCAAAACTTCGATGATTACGATTATCATTATGATTTTGATTTTGATTTTGATTTTGATCATAACCCATCATTCCTCAACTCATTTCTAAGCCAGCAACCCCCCATTGTGGCTTCTGCTGATCATCACGTGCTTCACTGCTGA

Protein sequence

MSPVLSEILRSGFTISSSLRRRTHLVQSFSVVFLHWFDISDWGSEPELWFGRGAEAIDGPEKKKENAIEPGIGAAVEDAETAALGRADGAAENSVLRAQILELTHRLDSLNRILSHINNNNNDKDEEQHIFLQNFDDYDYHYDFDFDFDFDHNPSFLNSFLSQQPPIVASADHHVLHC

Homology

[Close]

BLAST of Cp4.1LG02g07780.1 vs. TrEMBL
Match: A0A0A0LJ32_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G860320 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.2e-15
Identity = 57/92 (61.96%), Postives = 68/92 (73.91%), Query Frame = 1


Query: 91  AENSVLRAQILELTHRLDSLNRILSHINNNNN-DKDEEQHIFLQNFDDYDYHYDFDFDFD 150
           AENSVLRAQILELTHRL+SLN+ILSHINNNNN D DE+Q     N +++   +  +FD D
Sbjct: 92  AENSVLRAQILELTHRLESLNQILSHINNNNNIDDDEQQQQQQHNNNNFLQDFWDNFD-D 151

Query: 151 FDHNPSFLNSFL----SQQPPIVASADHHVLH 178
           FD NP F+NS       QQPPI+ASA HH+LH
Sbjct: 152 FDLNPLFINSLFFTPQQQQPPIMASAHHHLLH 182

[Close]

BLAST of Cp4.1LG02g07780.1 vs. TrEMBL
Match: A0A0D2U3U9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G008000 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-11
Identity = 69/190 (36.32%), Postives = 105/190 (55.26%), Query Frame = 1


Query: 1   MSPVLSEILRSGFTISSSLRRRTHLVQSFSVVFLHWFD-ISDWGSEPELWFGRGAEAIDG 60
           MSPV+SEILRSGF I+SSLRRRTHLVQSFSVVFL+  + +S+ GSE +L   R  + ++ 
Sbjct: 1   MSPVVSEILRSGFMINSSLRRRTHLVQSFSVVFLYCGNSMSNSGSEEDLHNQRKRKRMES 60

Query: 61  P----------EKKKENAIEPGIGAAVEDAET-------AALGRADGAAENSVLRAQILE 120
                      ++K  + +   +   V+D                +  AENSVLRAQ++E
Sbjct: 61  NRESARRSRMRKQKHLDELMAQVTQLVKDNNQILTTINFTTQHYINMEAENSVLRAQMME 120

Query: 121 LTHRLDSLNRILSHINNNNNDKDEEQHIFLQNFDDYDYHYDFDFDFDFDHNPSFLNSFLS 173
           L+ RL+SLN IL+++N+  N  +       +  + ++   D  F     ++ +  N F+ 
Sbjct: 121 LSQRLESLNEILNYLNSGTNSNNSNDG--FETSEGFETTSDESFTTIISNHNN--NPFVI 180

[Close]

BLAST of Cp4.1LG02g07780.1 vs. TrEMBL
Match: A0A0D2S4P8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G199300 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.3e-11
Identity = 62/150 (41.33%), Postives = 83/150 (55.33%), Query Frame = 1


Query: 1   MSPVLSEILRSGFTISSSLRRRTHLVQSFSVVFLHWFD--------ISDWGSEPELWFGR 60
           MSPV+SEILRSGF I+SSLRRRTHLVQSFSVVFL+  +        + + GSE +L    
Sbjct: 1   MSPVVSEILRSGFMINSSLRRRTHLVQSFSVVFLYCGNSNSSSSSQLQNSGSEEDLHQQN 60

Query: 61  GAEAIDGPEKKKENAIEPGIGAAVED--------AETAALGRADGA-------------- 119
             +      K+KE+  E    + +          A+ A L + +                
Sbjct: 61  MMD--QRKRKRKESNRESARRSRMRKQQHLDELVAQVAQLSKDNNQILNSINFTTHHYLN 120

[Close]

BLAST of Cp4.1LG02g07780.1 vs. TrEMBL
Match: A0A0D2MA61_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G126500 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.8e-10
Identity = 73/200 (36.50%), Postives = 95/200 (47.50%), Query Frame = 1


Query: 1   MSPVLSEILRSGFTISSSLRRRTHLVQSFSVVFLHWFDISDWGSEPELWFGRGAEAIDGP 60
           MSPV+SEILRSGF I+SSLRRRTHLVQSFSVVFLH  + +  GS      G   +     
Sbjct: 1   MSPVVSEILRSGFMINSSLRRRTHLVQSFSVVFLHCGNSNSSGSTLLQISGSEEDLHRLM 60

Query: 61  EKKKENAIEPGIGAAVEDAETAALGRADGAAE---------------------------- 120
           +++K   +E    +A            D  A+                            
Sbjct: 61  DERKRKRMESNRESARRSRMRKQKYLDDLMAQLTLLRKDNNQILTSINFITHHYFNIEAE 120

Query: 121 NSVLRAQILELTHRLDSLNRILSHINNNNNDKDEEQHIFLQNFDDYDYHYDFDFDFDFDH 173
           NSVLRAQ +EL+ RLDSLN IL+++    ND      I++   + ++   D         
Sbjct: 121 NSVLRAQFMELSQRLDSLNHILNYL----NDPTLNNGIWVYETEPFETSAD--------- 180

[Close]

BLAST of Cp4.1LG02g07780.1 vs. TrEMBL
Match: V7CRI2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G011900g PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.1e-09
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 1


Query: 1  MSPVLSEILRSGFTISSSLRRRTHLVQSFSVVFLHWF 38
          MSPVLSEILRSGF I+SSLRRRTHLVQSFSVVFL+WF
Sbjct: 1  MSPVLSEILRSGFMINSSLRRRTHLVQSFSVVFLYWF 37

[Close]

BLAST of Cp4.1LG02g07780.1 vs. TAIR10
Match: AT1G75388.1 (AT1G75388.1 conserved peptide upstream open reading frame 5)

HSP 1 Score: 68.6 bits (166), Expect = 4.6e-12
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 1


Query: 1  MSPVLSEILRSGFTISSSLRRRTHLVQSFSVVFLHWF 38
          MSPV+SEILRSG TI SSLRRRTHLVQSFSVVFL+WF
Sbjct: 1  MSPVISEILRSGLTIDSSLRRRTHLVQSFSVVFLYWF 37

[Close]

BLAST of Cp4.1LG02g07780.1 vs. TAIR10
Match: AT2G18162.1 (AT2G18162.1 conserved peptide upstream open reading frame 1)

HSP 1 Score: 58.9 bits (141), Expect = 3.6e-09
Identity = 28/37 (75.68%), Postives = 32/37 (86.49%), Query Frame = 1


Query: 1  MSPVLSEILRSGFTISSSLRRRTHLVQSFSVVFLHWF 38
          M+PVL EIL SG T+ S+L RRTHLVQSFSVVFL+WF
Sbjct: 1  MTPVLCEILLSGLTVKSALCRRTHLVQSFSVVFLYWF 37

[Close]

BLAST of Cp4.1LG02g07780.1 vs. TAIR10
Match: AT4G34588.1 (AT4G34588.1 conserved peptide upstream open reading frame 2)

HSP 1 Score: 55.5 bits (132), Expect = 4.0e-08
Identity = 27/37 (72.97%), Postives = 33/37 (89.19%), Query Frame = 1


Query: 1  MSPV-LSEILRSGFTISSSLRRRTHLVQSFSVVFLHW 37
          MSP+ LSEI  SGF ++S++RRRTHLVQSFSVVFL+W
Sbjct: 1  MSPIILSEIFLSGFMLNSTIRRRTHLVQSFSVVFLYW 37

[Close]

BLAST of Cp4.1LG02g07780.1 vs. NCBI nr
Match: gi|778686677|ref|XP_011652434.1| (PREDICTED: ocs element-binding factor 1-like [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 3.2e-15
Identity = 57/92 (61.96%), Postives = 68/92 (73.91%), Query Frame = 1


Query: 91  AENSVLRAQILELTHRLDSLNRILSHINNNNN-DKDEEQHIFLQNFDDYDYHYDFDFDFD 150
           AENSVLRAQILELTHRL+SLN+ILSHINNNNN D DE+Q     N +++   +  +FD D
Sbjct: 92  AENSVLRAQILELTHRLESLNQILSHINNNNNIDDDEQQQQQQHNNNNFLQDFWDNFD-D 151

Query: 151 FDHNPSFLNSFL----SQQPPIVASADHHVLH 178
           FD NP F+NS       QQPPI+ASA HH+LH
Sbjct: 152 FDLNPLFINSLFFTPQQQQPPIMASAHHHLLH 182

[Close]

BLAST of Cp4.1LG02g07780.1 vs. NCBI nr
Match: gi|659133042|ref|XP_008466523.1| (PREDICTED: ocs element-binding factor 1-like [Cucumis melo])

HSP 1 Score: 88.2 bits (217), Expect = 1.6e-14
Identity = 55/96 (57.29%), Postives = 70/96 (72.92%), Query Frame = 1


Query: 91  AENSVLRAQILELTHRLDSLNRILSHINNNNNDKDEEQ-----HIFLQNFDDYDYHYDFD 150
           AENSVLRAQILELTHRL+SLN+ILSHINNN++D+ +++     + FLQ+F D       +
Sbjct: 92  AENSVLRAQILELTHRLESLNQILSHINNNDDDEQQQRQQQHNNNFLQDFCD-------N 151

Query: 151 FDFDFDHNPSFLNSFL----SQQPPIVASADHHVLH 178
           FD +FD NP F+NS       QQPPI+ASA HH+LH
Sbjct: 152 FD-EFDLNPLFINSLFFTPQQQQPPIMASAHHHLLH 179

[Close]

BLAST of Cp4.1LG02g07780.1 vs. NCBI nr
Match: gi|763796639|gb|KJB63594.1| (hypothetical protein B456_010G008000 [Gossypium raimondii])

HSP 1 Score: 78.2 bits (191), Expect = 1.6e-11
Identity = 69/190 (36.32%), Postives = 105/190 (55.26%), Query Frame = 1


Query: 1   MSPVLSEILRSGFTISSSLRRRTHLVQSFSVVFLHWFD-ISDWGSEPELWFGRGAEAIDG 60
           MSPV+SEILRSGF I+SSLRRRTHLVQSFSVVFL+  + +S+ GSE +L   R  + ++ 
Sbjct: 1   MSPVVSEILRSGFMINSSLRRRTHLVQSFSVVFLYCGNSMSNSGSEEDLHNQRKRKRMES 60

Query: 61  P----------EKKKENAIEPGIGAAVEDAET-------AALGRADGAAENSVLRAQILE 120
                      ++K  + +   +   V+D                +  AENSVLRAQ++E
Sbjct: 61  NRESARRSRMRKQKHLDELMAQVTQLVKDNNQILTTINFTTQHYINMEAENSVLRAQMME 120

Query: 121 LTHRLDSLNRILSHINNNNNDKDEEQHIFLQNFDDYDYHYDFDFDFDFDHNPSFLNSFLS 173
           L+ RL+SLN IL+++N+  N  +       +  + ++   D  F     ++ +  N F+ 
Sbjct: 121 LSQRLESLNEILNYLNSGTNSNNSNDG--FETSEGFETTSDESFTTIISNHNN--NPFVI 180

[Close]

BLAST of Cp4.1LG02g07780.1 vs. NCBI nr
Match: gi|763791212|gb|KJB58208.1| (hypothetical protein B456_009G199300 [Gossypium raimondii])

HSP 1 Score: 76.3 bits (186), Expect = 6.2e-11
Identity = 62/150 (41.33%), Postives = 83/150 (55.33%), Query Frame = 1


Query: 1   MSPVLSEILRSGFTISSSLRRRTHLVQSFSVVFLHWFD--------ISDWGSEPELWFGR 60
           MSPV+SEILRSGF I+SSLRRRTHLVQSFSVVFL+  +        + + GSE +L    
Sbjct: 1   MSPVVSEILRSGFMINSSLRRRTHLVQSFSVVFLYCGNSNSSSSSQLQNSGSEEDLHQQN 60

Query: 61  GAEAIDGPEKKKENAIEPGIGAAVED--------AETAALGRADGA-------------- 119
             +      K+KE+  E    + +          A+ A L + +                
Sbjct: 61  MMD--QRKRKRKESNRESARRSRMRKQQHLDELVAQVAQLSKDNNQILNSINFTTHHYLN 120

[Close]

BLAST of Cp4.1LG02g07780.1 vs. NCBI nr
Match: gi|763747033|gb|KJB14472.1| (hypothetical protein B456_002G126500 [Gossypium raimondii])

HSP 1 Score: 73.6 bits (179), Expect = 4.0e-10
Identity = 73/200 (36.50%), Postives = 95/200 (47.50%), Query Frame = 1


Query: 1   MSPVLSEILRSGFTISSSLRRRTHLVQSFSVVFLHWFDISDWGSEPELWFGRGAEAIDGP 60
           MSPV+SEILRSGF I+SSLRRRTHLVQSFSVVFLH  + +  GS      G   +     
Sbjct: 1   MSPVVSEILRSGFMINSSLRRRTHLVQSFSVVFLHCGNSNSSGSTLLQISGSEEDLHRLM 60

Query: 61  EKKKENAIEPGIGAAVEDAETAALGRADGAAE---------------------------- 120
           +++K   +E    +A            D  A+                            
Sbjct: 61  DERKRKRMESNRESARRSRMRKQKYLDDLMAQLTLLRKDNNQILTSINFITHHYFNIEAE 120

Query: 121 NSVLRAQILELTHRLDSLNRILSHINNNNNDKDEEQHIFLQNFDDYDYHYDFDFDFDFDH 173
           NSVLRAQ +EL+ RLDSLN IL+++    ND      I++   + ++   D         
Sbjct: 121 NSVLRAQFMELSQRLDSLNHILNYL----NDPTLNNGIWVYETEPFETSAD--------- 180

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g07780.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG02g07780.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ32_CUCSA	2.2e-15	61.96	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G860320 PE=4 SV=1	[more]
A0A0D2U3U9_GOSRA	1.1e-11	36.32	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G008000 PE=4 SV=1	[more]
A0A0D2S4P8_GOSRA	4.3e-11	41.33	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G199300 PE=4 SV=1	[more]
A0A0D2MA61_GOSRA	2.8e-10	36.50	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G126500 PE=4 SV=1	[more]
V7CRI2_PHAVU	4.1e-09	91.89	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G011900g PE=4 SV=1	[more]

BLAST of Cp4.1LG02g07780.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G75388.1	4.6e-12	89.19	conserved peptide upstream open reading frame 5	[more]
AT2G18162.1	3.6e-09	75.68	conserved peptide upstream open reading frame 1	[more]
AT4G34588.1	4.0e-08	72.97	conserved peptide upstream open reading frame 2	[more]

BLAST of Cp4.1LG02g07780.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778686677\|ref\|XP_011652434.1\|	3.2e-15	61.96	PREDICTED: ocs element-binding factor 1-like [Cucumis sativus]	[more]
gi\|659133042\|ref\|XP_008466523.1\|	1.6e-14	57.29	PREDICTED: ocs element-binding factor 1-like [Cucumis melo]	[more]
gi\|763796639\|gb\|KJB63594.1\|	1.6e-11	36.32	hypothetical protein B456_010G008000 [Gossypium raimondii]	[more]
gi\|763791212\|gb\|KJB58208.1\|	6.2e-11	41.33	hypothetical protein B456_009G199300 [Gossypium raimondii]	[more]
gi\|763747033\|gb\|KJB14472.1\|	4.0e-10	36.50	hypothetical protein B456_002G126500 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG02g07780	Cp4.1LG02g07780	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG02g07780.1:cds:001	Cp4.1LG02g07780.1:cds:001	CDS
Cp4.1LG02g07780.1:cds:002	Cp4.1LG02g07780.1:cds:002	CDS
Cp4.1LG02g07780.1:cds:003	Cp4.1LG02g07780.1:cds:003	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG02g07780.1	Cp4.1LG02g07780.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 107..127 scor
None	No IPR available	PANTHER	PTHR38362	FAMILY NOT NAMED	coord: 1..41 score: 4.2
None	No IPR available	PANTHER	PTHR38362:SF1	CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 2-RELATED	coord: 1..41 score: 4.2