Cp4.1LG20g04980 (gene) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TATAATTTCTTAATTTTAAGTTTAAAACTAATAATTCAAACCCGAGCTAACTTGATTTCGAATATAGGAATTAAGGTCTACCCGAAAACTAAAAGAAACTATTTAAAAAAAAATTAAGAGAATCAATACTCTCTAAAGCTAAACAAACAAATTAAAAAAAAGTAAAAAGAAAGTAAAGAATCTTAGAAATATAACACATTAAAAGGATTAAATTGAAACGGCACCGTAAGAGCGTAATTTTTTCAATAAATTGTGTCAAACGTTTCTTGTCACCGTCGAAGGAAAGAAAATGGCCACAACGGCGGCGTCTTTTCCGGTCGTTTTGTTCTTCCTCCTCCTCCTCACCTCTCCACCGCCGTCCCTCTCCTTCTCCTTCTCCCAATTCAAAACCCTATTTTCACTCGCACATTCCCTCATGTCTCGTGTCGCCAATCTACGCGCCTCTCGCGGAGACTTCGCCGGCTCGCAACGGGCCAGGCACATTGCCCAACAGCTAGAGCAAGGTCTCGGACTAAACTTCTGGGGCTCCATGTGGTCGCTCGCGTGGGACTACGCGAAGAACTACGCTTGGAGAGACATCTCCTATTCAGATCTCTACGACGCCGTTCCCGACATGAACGAGTTGCTTAGGGCTTTCGCCGAGTTGACTGGGTTGGAATCAGACATGGCAAGAGCGAGTTGGGTTACGCGGAATTACCAATCGGTCCTGAGGGTAGCCAATTCGTTGTTGAAGAGGCTTCTTAAAGTGTTTAGAAAATCGGTACGTTGATGGGTCGCTTTCGGTTGCTTGCAAGGTGTTCGATAAAATGTCTGAATGAAAAGTAGGGTGTAAAATGGCGCAATTAATCTGTATTTTGTTGTTTTTTGCGATTGGCATGGCAGGGGGCTTGGAGGAATGTGGTGGAGACGGTTCAAGTGGAGGTGGTGGACGGTGGATTGCTGAAGGACTGTTTGGAGCTGGGAAGTGGCGATTTGAAAGGCATGGTTCAGATTCTCAAGGATTTGGCTTTGAATTTCTATTCCTCCACTTCTCAACGCCGTAATGAACTGTAAGAATTATTTACAGTAATTTAGTTTTTGAATTTCTGATCTCTTAATTAATAAAGATGGGAAGCCATTTAATTAGTG TATAATTTCTTAATTTTAAGTTTAAAACTAATAATTCAAACCCGAGCTAACTTGATTTCGAATATAGGAATTAAGGTCTACCCGAAAACTAAAAGAAACTATTTAAAAAAAAATTAAGAGAATCAATACTCTCTAAAGCTAAACAAACAAATTAAAAAAAAGTAAAAAGAAAGTAAAGAATCTTAGAAATATAACACATTAAAAGGATTAAATTGAAACGGCACCGTAAGAGCGTAATTTTTTCAATAAATTGTGTCAAACGTTTCTTGTCACCGTCGAAGGAAAGAAAATGGCCACAACGGCGGCGTCTTTTCCGGTCGTTTTGTTCTTCCTCCTCCTCCTCACCTCTCCACCGCCGTCCCTCTCCTTCTCCTTCTCCCAATTCAAAACCCTATTTTCACTCGCACATTCCCTCATGTCTCGTGTCGCCAATCTACGCGCCTCTCGCGGAGACTTCGCCGGCTCGCAACGGGCCAGGCACATTGCCCAACAGCTAGAGCAAGGTCTCGGACTAAACTTCTGGGGCTCCATGTGGTCGCTCGCGTGGGACTACGCGAAGAACTACGCTTGGAGAGACATCTCCTATTCAGATCTCTACGACGCCGTTCCCGACATGAACGAGTTGCTTAGGGCTTTCGCCGAGTTGACTGGGTTGGAATCAGACATGGCAAGAGCGAGTTGGGTTACGCGGAATTACCAATCGGTCCTGAGGGTAGCCAATTCGTTGTTGAAGAGGCTTCTTAAAGTGTTTAGAAAATCGGGGGCTTGGAGGAATGTGGTGGAGACGGTTCAAGTGGAGGTGGTGGACGGTGGATTGCTGAAGGACTGTTTGGAGCTGGGAAGTGGCGATTTGAAAGGCATGGTTCAGATTCTCAAGGATTTGGCTTTGAATTTCTATTCCTCCACTTCTCAACGCCGTAATGAACTGTAAGAATTATTTACAGTAATTTAGTTTTTGAATTTCTGATCTCTTAATTAATAAAGATGGGAAGCCATTTAATTAGTG ATGGCCACAACGGCGGCGTCTTTTCCGGTCGTTTTGTTCTTCCTCCTCCTCCTCACCTCTCCACCGCCGTCCCTCTCCTTCTCCTTCTCCCAATTCAAAACCCTATTTTCACTCGCACATTCCCTCATGTCTCGTGTCGCCAATCTACGCGCCTCTCGCGGAGACTTCGCCGGCTCGCAACGGGCCAGGCACATTGCCCAACAGCTAGAGCAAGGTCTCGGACTAAACTTCTGGGGCTCCATGTGGTCGCTCGCGTGGGACTACGCGAAGAACTACGCTTGGAGAGACATCTCCTATTCAGATCTCTACGACGCCGTTCCCGACATGAACGAGTTGCTTAGGGCTTTCGCCGAGTTGACTGGGTTGGAATCAGACATGGCAAGAGCGAGTTGGGTTACGCGGAATTACCAATCGGTCCTGAGGGTAGCCAATTCGTTGTTGAAGAGGCTTCTTAAAGTGTTTAGAAAATCGGGGGCTTGGAGGAATGTGGTGGAGACGGTTCAAGTGGAGGTGGTGGACGGTGGATTGCTGAAGGACTGTTTGGAGCTGGGAAGTGGCGATTTGAAAGGCATGGTTCAGATTCTCAAGGATTTGGCTTTGAATTTCTATTCCTCCACTTCTCAACGCCGTAATGAACTGTAA MATTAASFPVVLFFLLLLTSPPPSLSFSFSQFKTLFSLAHSLMSRVANLRASRGDFAGSQRARHIAQQLEQGLGLNFWGSMWSLAWDYAKNYAWRDISYSDLYDAVPDMNELLRAFAELTGLESDMARASWVTRNYQSVLRVANSLLKRLLKVFRKSGAWRNVVETVQVEVVDGGLLKDCLELGSGDLKGMVQILKDLALNFYSSTSQRRNEL
BLAST of Cp4.1LG20g04980 vs. TrEMBL
Match: A0A0A0LV11_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G467080 PE=4 SV=1) HSP 1 Score: 349.7 bits (896), Expect = 2.4e-93 Identity = 181/213 (84.98%), Postives = 196/213 (92.02%), Query Frame = 1
BLAST of Cp4.1LG20g04980 vs. TrEMBL
Match: B9I133_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s03090g PE=4 SV=2) HSP 1 Score: 240.7 bits (613), Expect = 1.6e-60 Identity = 125/203 (61.58%), Postives = 157/203 (77.34%), Query Frame = 1
BLAST of Cp4.1LG20g04980 vs. TrEMBL
Match: A5BXI5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001819 PE=4 SV=1) HSP 1 Score: 233.8 bits (595), Expect = 1.9e-58 Identity = 120/207 (57.97%), Postives = 158/207 (76.33%), Query Frame = 1
BLAST of Cp4.1LG20g04980 vs. TrEMBL
Match: A0A067JMF0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21641 PE=4 SV=1) HSP 1 Score: 233.4 bits (594), Expect = 2.5e-58 Identity = 120/209 (57.42%), Postives = 155/209 (74.16%), Query Frame = 1
BLAST of Cp4.1LG20g04980 vs. TrEMBL
Match: W9RLB2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_015610 PE=4 SV=1) HSP 1 Score: 230.3 bits (586), Expect = 2.1e-57 Identity = 119/196 (60.71%), Postives = 146/196 (74.49%), Query Frame = 1
BLAST of Cp4.1LG20g04980 vs. TAIR10
Match: AT5G45660.1 (AT5G45660.1 unknown protein) HSP 1 Score: 202.2 bits (513), Expect = 3.2e-52 Identity = 107/211 (50.71%), Postives = 144/211 (68.25%), Query Frame = 1
BLAST of Cp4.1LG20g04980 vs. NCBI nr
Match: gi|449459322|ref|XP_004147395.1| (PREDICTED: uncharacterized protein LOC101205837 [Cucumis sativus]) HSP 1 Score: 349.7 bits (896), Expect = 3.5e-93 Identity = 181/213 (84.98%), Postives = 196/213 (92.02%), Query Frame = 1
BLAST of Cp4.1LG20g04980 vs. NCBI nr
Match: gi|659068295|ref|XP_008443717.1| (PREDICTED: uncharacterized protein LOC103487237 [Cucumis melo]) HSP 1 Score: 345.5 bits (885), Expect = 6.6e-92 Identity = 177/207 (85.51%), Postives = 194/207 (93.72%), Query Frame = 1
BLAST of Cp4.1LG20g04980 vs. NCBI nr
Match: gi|1009106781|ref|XP_015876289.1| (PREDICTED: uncharacterized protein LOC107412951 isoform X1 [Ziziphus jujuba]) HSP 1 Score: 271.2 bits (692), Expect = 1.6e-69 Identity = 135/205 (65.85%), Postives = 169/205 (82.44%), Query Frame = 1
BLAST of Cp4.1LG20g04980 vs. NCBI nr
Match: gi|1009106785|ref|XP_015876298.1| (PREDICTED: uncharacterized protein LOC107412951 isoform X3 [Ziziphus jujuba]) HSP 1 Score: 255.8 bits (652), Expect = 6.8e-65 Identity = 129/193 (66.84%), Postives = 159/193 (82.38%), Query Frame = 1
BLAST of Cp4.1LG20g04980 vs. NCBI nr
Match: gi|1009106789|ref|XP_015876308.1| (PREDICTED: uncharacterized protein LOC107412951 isoform X5 [Ziziphus jujuba]) HSP 1 Score: 255.4 bits (651), Expect = 8.9e-65 Identity = 129/192 (67.19%), Postives = 158/192 (82.29%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: |