Lsi05G002550 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTCGCAGTCACCATTATGTATTATGCCCTCGTATTTGCAGATGGTCATGCCAAAATTAGGTTGGAGATGGCTCCTCGCATTTTCTTCCTTTCCTTCATTTCTCCTACTACTCTTCTACCAATCTACTCCAGAGTCCCCACGGTATCTCTGTTTACAAGGTAGAACAAGTGATGCAGCTATTATTTTAGAGAAAATAGCACGACGTAATAGAACGAATCTCCCCCCTGGCATTCTTGTTTCTAGTCACTCGTATGATTTTGAGGAGCAAAGTATTCCCGTGGAAGATGTGCATTTGCTCTCACTAACACAAACTAAAGTTGAAACTTCTCAAGCAATAAAATCTAATATGCTGGGTCTCTCTCCATTGTTAAAGCTTCTTTCTCGAGAACTGCTTGTATCTACATTGCTCCTCTGGGTGGTTTTCTTTGGAAATGCATTCTCTTATTATGGCCTCGTGCTGCTGACCACTGAGTTGACTGGGACGAGTAGATGTACGTCTACTGATATACATCTAAAAGAACACGAAGATGTCAACTACAGAGATGTCTTTATCTCGAGTTTTGCAGGTAACAGTCTTTTGGTTGTTCCAAAGTTTTCTCTAGCCAGGGGCAAAGGTTTGGTGCGTGGATGATAATCTAACCTCAAATTTTCTTTGAAGAATTACCTGGTCTCGCGTTATCAGCTGTCATGGTTGACAAACTAGGGCGTAAGTTATCGATGTCTTCAATGTTCTTCCTGGGCGCTACATTTCTATTTCCTCTAGCATTTTATCGGGTTGATGGCTTAACAACAGCCCTTTTGTTTGGAGCTCGCATATGTGTCACATCTACATTCACAGTTGTCTATATATATGCTCCCGAGGTAAGTTGGAACACTAAACTTTGCATCGCCAAGAGACAATTGCCACATCATGCATCACAACTAGAAATACTTTTTTTCTGCAGGTTCATATTATTTATGCTCCCAATAATAATGTGATTTTTTAAGAGGATGGTCTGTTGTCTGCTTTTGATACTTGGTTTTTTTTTTTTTTATCTGGACTTGCATTCTCCTATCATATGTCTTTCTCCTTTAAAACTGAAAACTTTTTTAGTCTCCATGTTAGTTGCTTGTGTGATTTATCATTACATGATTTATTGAATTACATTCTCTTATAAGAATATCTTATTTTTTTACCAAATTATCTTTCCTCTGTCCTTCATTCCACTTTGGTTCGAAATGTGATTACCAACCAAAAATTTCCTCCATACATGTTTATGTTTCTTGGTGCCATAATTGTTTACACCCCGAGAATTTTATGTAGTTCTTAAGCTCTTTCTTTGCTGTGGTGTAACGTATTTATACTCTAACAATCAATGCAAACCACAGATATATCCGACCTCAATCCGAACGACTGGTGTCGGGGTTGCTAGCTCTGTAGGAAGAATTGGGGGAATGATATGCCCTCTCGTGGCAGTAGCTCTGGTTAAAGGATGCCATCAAACAGCGGCTATTATTTTGTTTGAGATTGTATTTTTTCTGTCAGGGATCTGTGTTGTGCTGTTTCCATTCGAAACCAAGGGACAAGATCTTCCTGAAAAAGTGTAGCTGAAACTTAGAAATCATATTGATCACATAGTTATAATTGGACTCGATCTCACCCCTATTACCTCTATTCATTATCTGCTGCTAATAGATATTGTTGAAGAGACCGTGCCTTCGGTCTCATCTTGCACATGTATAATTCAAGGTCTAGCAAAATGCTATTGAAATTCTCAAACTATTAGATGGATACAATGTAGAACTTACACGACTTGATTTATGTATAATATATATGAGCAAATGTTGAAATGTGATTTCTGA ATGGTCGCAGTCACCATTATGTATTATGCCCTCGTATTTGCAGATGGTCATGCCAAAATTAGGTTGGAGATGGCTCCTCGCATTTTCTTCCTTTCCTTCATTTCTCCTACTACTCTTCTACCAATCTACTCCAGAGTCCCCACGGTATCTCTGTTTACAAGTCACTCGTATGATTTTGAGGAGCAAAGTATTCCCGTGGAAGATGTGCATTTGCTCTCACTAACACAAACTAAAGTTGAAACTTCTCAAGCAATAAAATCTAATATGCTGGGTCTCTCTCCATTGTTAAAGCTTCTTTCTCGAGAACTGCTTGTATCTACATTGCTCCTCTGGGTGGTTTTCTTTGGAAATGCATTCTCTTATTATGGCCTCGTGCTGCTGACCACTGAGTTGACTGGGACGAGTAGATGTACGTCTACTGATATACATCTAAAAGAACACGAAGATGTCAACTACAGAGATGTCTTTATCTCGAGTTTTGCAGAATTACCTGGTCTCGCGTTATCAGCTGTCATGGTTGACAAACTAGGGCGTAAGTTATCGATGTCTTCAATGTTCTTCCTGGGCGCTACATTTCTATTTCCTCTAGCATTTTATCGGGTTGATGGCTTAACAACAGCCCTTTTGTTTGGAGCTCGCATATGTGTCACATCTACATTCACAGTTGTCTATATATATGCTCCCGAGATATATCCGACCTCAATCCGAACGACTGGTGTCGGGGTTGCTAGCTCTGTAGGAAGAATTGGGGGAATGATATGCCCTCTCGTGGCAGTAGCTCTGGTTAAAGGATGCCATCAAACAGCGGCTATTATTTTGTTTGAGATTGTATTTTTTCTGTCAGGGATCTGTGTTGTGCTGTTTCCATTCGAAACCAAGGGACAAGATCTTCCTGAAAAAGTGTAGCTGAAACTTAGAAATCATATTGATCACATAGTTATAATTGGACTCGATCTCACCCCTATTACCTCTATTCATTATCTGCTGCTAATAGATATTGTTGAAGAGACCGTGCCTTCGGTCTCATCTTGCACATGTATAATTCAAGGTCTAGCAAAATGCTATTGAAATTCTCAAACTATTAGATGGATACAATGTAGAACTTACACGACTTGATTTATGTATAATATATATGAGCAAATGTTGAAATGTGATTTCTGA ATGGTCGCAGTCACCATTATGTATTATGCCCTCGTATTTGCAGATGGTCATGCCAAAATTAGGTTGGAGATGGCTCCTCGCATTTTCTTCCTTTCCTTCATTTCTCCTACTACTCTTCTACCAATCTACTCCAGAGTCCCCACGGTATCTCTGTTTACAAGTCACTCGTATGATTTTGAGGAGCAAAGTATTCCCGTGGAAGATGTGCATTTGCTCTCACTAACACAAACTAAAGTTGAAACTTCTCAAGCAATAAAATCTAATATGCTGGGTCTCTCTCCATTGTTAAAGCTTCTTTCTCGAGAACTGCTTGTATCTACATTGCTCCTCTGGGTGGTTTTCTTTGGAAATGCATTCTCTTATTATGGCCTCGTGCTGCTGACCACTGAGTTGACTGGGACGAGTAGATGTACGTCTACTGATATACATCTAAAAGAACACGAAGATGTCAACTACAGAGATGTCTTTATCTCGAGTTTTGCAGAATTACCTGGTCTCGCGTTATCAGCTGTCATGGTTGACAAACTAGGGCGTAAGTTATCGATGTCTTCAATGTTCTTCCTGGGCGCTACATTTCTATTTCCTCTAGCATTTTATCGGGTTGATGGCTTAACAACAGCCCTTTTGTTTGGAGCTCGCATATGTGTCACATCTACATTCACAGTTGTCTATATATATGCTCCCGAGATATATCCGACCTCAATCCGAACGACTGGTGTCGGGGTTGCTAGCTCTGTAGGAAGAATTGGGGGAATGATATGCCCTCTCGTGGCAGTAGCTCTGGTTAAAGGATGCCATCAAACAGCGGCTATTATTTTGTTTGAGATTGTATTTTTTCTGTCAGGGATCTGTGTTGTGCTGTTTCCATTCGAAACCAAGGGACAAGATCTTCCTGAAAAAGTGTAG MVAVTIMYYALVFADGHAKIRLEMAPRIFFLSFISPTTLLPIYSRVPTVSLFTSHSYDFEEQSIPVEDVHLLSLTQTKVETSQAIKSNMLGLSPLLKLLSRELLVSTLLLWVVFFGNAFSYYGLVLLTTELTGTSRCTSTDIHLKEHEDVNYRDVFISSFAELPGLALSAVMVDKLGRKLSMSSMFFLGATFLFPLAFYRVDGLTTALLFGARICVTSTFTVVYIYAPEIYPTSIRTTGVGVASSVGRIGGMICPLVAVALVKGCHQTAAIILFEIVFFLSGICVVLFPFETKGQDLPEKV
BLAST of Lsi05G002550 vs. Swiss-Prot
Match: OCT7_ARATH (Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana GN=OCT7 PE=2 SV=1) HSP 1 Score: 272.3 bits (695), Expect = 6.3e-72 Identity = 147/246 (59.76%), Postives = 184/246 (74.80%), Query Frame = 1
BLAST of Lsi05G002550 vs. Swiss-Prot
Match: SVOP_MOUSE (Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1) HSP 1 Score: 112.5 bits (280), Expect = 8.3e-24 Identity = 73/206 (35.44%), Postives = 108/206 (52.43%), Query Frame = 1
BLAST of Lsi05G002550 vs. Swiss-Prot
Match: SVOP_BOVIN (Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1) HSP 1 Score: 111.7 bits (278), Expect = 1.4e-23 Identity = 75/207 (36.23%), Postives = 112/207 (54.11%), Query Frame = 1
BLAST of Lsi05G002550 vs. Swiss-Prot
Match: SVOP_PONAB (Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 2.4e-23 Identity = 75/210 (35.71%), Postives = 114/210 (54.29%), Query Frame = 1
BLAST of Lsi05G002550 vs. Swiss-Prot
Match: SVOP_HUMAN (Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 2.4e-23 Identity = 75/210 (35.71%), Postives = 114/210 (54.29%), Query Frame = 1
BLAST of Lsi05G002550 vs. TrEMBL
Match: A0A0A0L6X7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G198470 PE=4 SV=1) HSP 1 Score: 425.2 bits (1092), Expect = 6.4e-116 Identity = 223/258 (86.43%), Postives = 232/258 (89.92%), Query Frame = 1
BLAST of Lsi05G002550 vs. TrEMBL
Match: A0A059AK14_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03196 PE=4 SV=1) HSP 1 Score: 315.5 bits (807), Expect = 7.2e-83 Identity = 163/259 (62.93%), Postives = 204/259 (78.76%), Query Frame = 1
BLAST of Lsi05G002550 vs. TrEMBL
Match: V7AUH4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G165500g PE=4 SV=1) HSP 1 Score: 314.3 bits (804), Expect = 1.6e-82 Identity = 161/256 (62.89%), Postives = 201/256 (78.52%), Query Frame = 1
BLAST of Lsi05G002550 vs. TrEMBL
Match: V7ARC2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G165500g PE=4 SV=1) HSP 1 Score: 314.3 bits (804), Expect = 1.6e-82 Identity = 161/256 (62.89%), Postives = 201/256 (78.52%), Query Frame = 1
BLAST of Lsi05G002550 vs. TrEMBL
Match: A0A061G8P8_THECC (Major facilitator superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_027633 PE=4 SV=1) HSP 1 Score: 311.2 bits (796), Expect = 1.4e-81 Identity = 164/259 (63.32%), Postives = 199/259 (76.83%), Query Frame = 1
BLAST of Lsi05G002550 vs. TAIR10
Match: AT3G13050.1 (AT3G13050.1 Major facilitator superfamily protein) HSP 1 Score: 272.3 bits (695), Expect = 3.5e-73 Identity = 147/246 (59.76%), Postives = 184/246 (74.80%), Query Frame = 1
BLAST of Lsi05G002550 vs. TAIR10
Match: AT3G20660.1 (AT3G20660.1 organic cation/carnitine transporter4) HSP 1 Score: 51.2 bits (121), Expect = 1.3e-06 Identity = 48/175 (27.43%), Postives = 92/175 (52.57%), Query Frame = 1
BLAST of Lsi05G002550 vs. NCBI nr
Match: gi|659112367|ref|XP_008456184.1| (PREDICTED: organic cation/carnitine transporter 7 [Cucumis melo]) HSP 1 Score: 432.2 bits (1110), Expect = 7.5e-118 Identity = 226/258 (87.60%), Postives = 235/258 (91.09%), Query Frame = 1
BLAST of Lsi05G002550 vs. NCBI nr
Match: gi|449445929|ref|XP_004140724.1| (PREDICTED: organic cation/carnitine transporter 7 [Cucumis sativus]) HSP 1 Score: 425.2 bits (1092), Expect = 9.2e-116 Identity = 223/258 (86.43%), Postives = 232/258 (89.92%), Query Frame = 1
BLAST of Lsi05G002550 vs. NCBI nr
Match: gi|764610471|ref|XP_011467508.1| (PREDICTED: organic cation/carnitine transporter 7 [Fragaria vesca subsp. vesca]) HSP 1 Score: 316.6 bits (810), Expect = 4.6e-83 Identity = 164/258 (63.57%), Postives = 205/258 (79.46%), Query Frame = 1
BLAST of Lsi05G002550 vs. NCBI nr
Match: gi|702484949|ref|XP_010034101.1| (PREDICTED: organic cation/carnitine transporter 7 [Eucalyptus grandis]) HSP 1 Score: 315.5 bits (807), Expect = 1.0e-82 Identity = 163/259 (62.93%), Postives = 204/259 (78.76%), Query Frame = 1
BLAST of Lsi05G002550 vs. NCBI nr
Match: gi|593267396|ref|XP_007135876.1| (hypothetical protein PHAVU_010G165500g [Phaseolus vulgaris]) HSP 1 Score: 314.3 bits (804), Expect = 2.3e-82 Identity = 161/256 (62.89%), Postives = 201/256 (78.52%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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