Lsi05G004620 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AACATAAATTCATGAATTTTTTTACGATAAAATGAAAAGAAAATATCGAGAAGCTTCTTAACCAAAATCCAAAATCTTACAACAAAAAAAACACTCTAAAACCAAATTCCGTCAGCTTTCCGCGCTGGCGGGGCCGTTTTCACATAGCGTGTCGTTTCAGGTCAAAAAAAGTTCTAAATTCCTTCTTCAGAACTTGCTACAATCATCTTCCATAACATTACATCGCCAATTTCTCTTGGGTTGATTTCCGCTTCTGTGTGTAGTGATGTCGTACGATTATCTATTCAAGTACATCATCATCGGGGATACAGGTTTGCTTAGAATCTTTGTTTTGATTGTTTTTTCTTCTGGGTTTCTTTTGAAATTGGGGTTTTTGTGTGGGTTACAGGTGTGGGCAAATCTTGCTTGCTATTGCAGTTCACGGACAAGAGGTTTCAGCCTGTGCACGATCTCACTATTGGCGTTGAGTTTGGTGCTCGTATGGTCACCATCGATGGCCGACCTATTAAGCTTCAGATATGGGATACTGTGAGTTTCACTTCTTATTCCGTTTGCCTTTGCAGATTTTAATTTCTTTATATATATATATATATATATATATATATATATAAGTGGCAATATAGAATATGAGAAAGTAACAAGAACTGGAAGATTCTATAAATGATGGACAATTTCAGATGAATATTGGCTTGGTAAGTTTTTGTCCTCACCTATGGGACTTCTGAGATCAATCTTTTGGATGCGAGAACTTTACCCTCTGGTTTCGTAGATAGAATCAGTGATGTGTGTGTGGTACCAAGAACTTTCAAGTGATCCTAAGAAATCCCTTTAGAAACTCAGTCGTATTCGTCCATGATCTTTTATTGATGGGTCATGTGTTTAGATCATGTTTTGTGGGAATGTTAGTTTTCTAAGGCTATTAGGGACACATTTTTGGAGGCTTTAGGTGGCCAGCCAGATAGCTTGTAACAGATTGTGCAGGGCTATGGTAGAGGAGGTAAATATCATCCTCCTTTTGAGATTGATTGATGGCTTTTTGGCACTCTGCTTTCTTCGCAGTTTTATGGAATATTGACTTGCGAGGGATAGGAGGGGTTTTAGAGATGTGTAGAGCTTTTGGAGGAGATTTGGGCCTTGGCTTGGTTCAATGCCTCCCTTGTGTATCATTTCATGACCTCTCAAATGGATTATGAAGTATTTGAGAATATTTCTTGTTATCCTCTGGTCTATGCCAGCCTTTATTGGTTATGAATCGTGGGGGACAAGTTACCTTTCCACTCATCTATAATATAAGGGCAAGAAAGAAAAAGATGACCAACAGATTGGATTGTTGTGCACCGTTCCCAGTATCGGAGGAGATAACTTTTTGTTGATATGCATGCGCTGAAAATGAAGACAGAGACCAAACAGAATGCCTTAGATTTATTTCTATATGTGTTGTGTGGTGGTTGGGCCTACCCACCCTATTTGTTCCATGATCTATTATCGGTCTATTGATACTGGCCACTTTGATAAATTGTCCCTGATTTTGACCAGATTCAAAATAAATGGGGGCCCATTCTTAGTCTTCCAATGAACTCTACAAACAGCCAGATTCTCAAAAGCATGCTCCCTTGGCACAAACATGTTAATGAGGGATTTGGCCATGATAGAACCCAAGATGTTCAGAATCTTGATTATTAGAGGGGTGGAAGCACTTTATTTTCTGGCTAAGAATAGCCCATTTATAAGACTCCTTATACCGGAGATCTTCTAAACTATGGCATTTTTCTGATTCACCTTTTATTATTATTATTATTATTATTTATTATTATTATTATTATTTTATATCCGCGAGTATTCGGGCAAATTTACGTATAACTCGACTAATCTCATGGGACAACTATGTTCCTCTCAATTAATCAACTGGAATTTTTATAATGTCTTATAATTTTTTTCTAGAAGTTTTTTTCTCTCTCCTTATTTTCTTATTTTGAGTACAACAATTGCGGGGTGTGGAATCAAACCCCACCTCAAGGAAGGGAGTAAATGTCAATTACCATTCAGTTAAAACTCGCTTTTCTTATTAGAATTTATTCTCGTGGATCACATATTTTCATTCTTAGAATGCTGAGTTTCCTTAGAAGTCAATGGTTCTATGAATGGAAATTTCAATGTTACAATGATGTTTACTTTCACAACTTATCTAATTAAAGTTCTTCAAAATAATCTTAAAGATAAAAATGGCAAGCTATTTGCATCTGTTTGGAAGCTCTTTAGAAAATAACCTTTGACTTTTGCTTTTAAAACAATTTTCAAGAACTGACATTGTGTAATTCATGAGAATGAAAGTTGTACTCTTGAAATCATTATTCAGTAGCCATGATCAAACAATTATCCAAATGTAAATTTCCATGAATTTTTGTTTTAGAAAAATGCAATATTTTTTTTTCAAAACAGCTGTCAAATAGTTCTTTATGTTTGCTAAACATCAGACAGTAGATTCTTTACTGGTAATGGTGTAAATAGATGATGTTTCCCCTCGTAGAAAATTCCTTTTCCTTTTGGGTAGATAAGGAAGGGACATTTTACTTTATTGCAGGCTGGGCAAGAATCATTCAGATCAATTACAAGATCTTACTACAGAGGGGCAGCTGGTGCTCTTTTAGTTTATGACATTACCAGGTGAGTCTGATGGATGGATGGATGGATGAGATTAACTTTTCTTATCGTCTCAAAACTGTCTCTTCTTTCTAATTGTTAGCTATATTTCATTGCATTGAACTTAGGGATGTTTGCTTTTCTACCTTCAGAGTTCGTAACTGTTAAGCTAGTTTTCTTATGATTGACCAATTTGTATTTACTATGTGGCTTCTCTTGGTAAAGATCGACAACCAATCTTCACTAATATCCCCTTGCAGTTGCAGTTGAATTTGATTTTTTTTTTTTCTTGTTTTGAGAAATCTAAGATCATCTCATGATTTTGTTATCAGGAGGGAAACTTTCAATCACTTGGCGAGCTGGTTGGAAGATGCTCGGCAGCATGCAAATCCCAACATGTCGATTATGCTTGTAGGAAACAAGGCTGATCTCGCTCATCGAAGAGCTGTAAGCAAGGAAGAGGGAGAACAATTTGCAAAAGAAAATGGACTCTTATTCTTAGAGGCTTCTGCTAGAACAGCACAAAATGTTGAGGAGGTCAATTTTGTTTTATATGATATGTGCTTCTTCTAAAAATGTAGACTGTGTTGTACATCATCTTGATGTTTGATTTTACAGGCATTCATAAAGACTGCAGCTAAAATACTTCAAAATATTCAAGAAGGTGTCTTTGATGTATCCAATGAGGTAAATTGGGTCTATCTTTTGTGGTAAAAATGTAAATTATTGATTGTGAATGTTACCTACCCACTCTGCACTGTGATATTACTTATTTGACAATTATCTGACATTATGGGCATTCATACGACTGCAGTAGGTCGTAGTACAAACTAGTGGCACTGGGACGTGTAAAAATTAGCAAAGGGCCATAGTAGCGATTTGTCTAGACTATTAAAATTATAGGAGTCTTATGATAACCAATATTGTAGCATTAGATTCTTATCTCATGAGATTAGTTAAAGTTGTGCATAAGTTAGTGTGAACACCTATGAATATAAAAAAAAGGTTAGGCATTTGTGGGACAACATTTTCATTCTTTGCTGTTATTTTTTAGGGTTGTGGTTAGAGAGAAATATAAGAGTTTTTAAGAGCTTGAGAGATCTTGGGAGGAAATGTGGTCTCTGATTATGTTTAACGCTTTGTTGGCTGTTCTATATTCTTTCATTAGTTAGGGTGTTTCATTTTGTTGGCTGTTCTATATTCTTTCATTGAGAATATCAATTTCCATTTTTTCCTGAGCTTAAACTACTGTTAGCATAGTTTCTGTTTTAAGAACATGTTGCATTGCAACCATGAAGAACAGAAATTGAGTTTTACGAGACAACTGTTTTGATTGAATATTGCAGTCATCTGGGATCAAGGTCGGTTACGGGCGTCCTCAAGGGCCATCGGGGGCGAGAGATGGAACAGTTGCACAGCGAGGTGGATGCTGTGGCTAATTGTAAAACTAAAAGAAAGTATTGTGTATATGATGAAGAACCATTTTGTGCAAGTTGTTTTACTCTTGTGCAAACCGCCATGATTAAGTTTCTTGTGTATCCCCTTCTATTAGCATTGAATGTACAATGTACAGTGTCTGATCATATAACTCAGAAGTCTACTTCCCCAAACTATTACTTTACTGCTCACTCCCAAAGAAATATCTTGACGATCTTATGAATTTTAGTTTGTACATTTAATTAGATCTTGTCTCCATCCATTTGTTCTATCCTTCGCCATGGAATTTGCCATAAAAGAAATTATGTTTTCATGTAGCTTTAAGGTCGGGGTTGGTATCATATAT AACATAAATTCATGAATTTTTTTACGATAAAATGAAAAGAAAATATCGAGAAGCTTCTTAACCAAAATCCAAAATCTTACAACAAAAAAAACACTCTAAAACCAAATTCCGTCAGCTTTCCGCGCTGGCGGGGCCGTTTTCACATAGCGTGTCGTTTCAGGTCAAAAAAAGTTCTAAATTCCTTCTTCAGAACTTGCTACAATCATCTTCCATAACATTACATCGCCAATTTCTCTTGGGTTGATTTCCGCTTCTGTGTGTAGTGATGTCGTACGATTATCTATTCAAGTACATCATCATCGGGGATACAGGTGTGGGCAAATCTTGCTTGCTATTGCAGTTCACGGACAAGAGGTTTCAGCCTGTGCACGATCTCACTATTGGCGTTGAGTTTGGTGCTCGTATGGTCACCATCGATGGCCGACCTATTAAGCTTCAGATATGGGATACTGCTGGGCAAGAATCATTCAGATCAATTACAAGATCTTACTACAGAGGGGCAGCTGGTGCTCTTTTAGTTTATGACATTACCAGGAGGGAAACTTTCAATCACTTGGCGAGCTGGTTGGAAGATGCTCGGCAGCATGCAAATCCCAACATGTCGATTATGCTTGTAGGAAACAAGGCTGATCTCGCTCATCGAAGAGCTGTAAGCAAGGAAGAGGGAGAACAATTTGCAAAAGAAAATGGACTCTTATTCTTAGAGGCTTCTGCTAGAACAGCACAAAATGTTGAGGAGGCATTCATAAAGACTGCAGCTAAAATACTTCAAAATATTCAAGAAGGTGTCTTTGATGTATCCAATGAGTCATCTGGGATCAAGGTCGGTTACGGGCGTCCTCAAGGGCCATCGGGGGCGAGAGATGGAACAGTTGCACAGCGAGGTGGATGCTGTGGCTAATTGTAAAACTAAAAGAAAGTATTGTGTATATGATGAAGAACCATTTTGTGCAAGTTGTTTTACTCTTGTGCAAACCGCCATGATTAAGTTTCTTGTGTATCCCCTTCTATTAGCATTGAATGTACAATGTACAGTGTCTGATCATATAACTCAGAAGTCTACTTCCCCAAACTATTACTTTACTGCTCACTCCCAAAGAAATATCTTGACGATCTTATGAATTTTAGTTTGTACATTTAATTAGATCTTGTCTCCATCCATTTGTTCTATCCTTCGCCATGGAATTTGCCATAAAAGAAATTATGTTTTCATGTAGCTTTAAGGTCGGGGTTGGTATCATATAT ATGTCGTACGATTATCTATTCAAGTACATCATCATCGGGGATACAGGTGTGGGCAAATCTTGCTTGCTATTGCAGTTCACGGACAAGAGGTTTCAGCCTGTGCACGATCTCACTATTGGCGTTGAGTTTGGTGCTCGTATGGTCACCATCGATGGCCGACCTATTAAGCTTCAGATATGGGATACTGCTGGGCAAGAATCATTCAGATCAATTACAAGATCTTACTACAGAGGGGCAGCTGGTGCTCTTTTAGTTTATGACATTACCAGGAGGGAAACTTTCAATCACTTGGCGAGCTGGTTGGAAGATGCTCGGCAGCATGCAAATCCCAACATGTCGATTATGCTTGTAGGAAACAAGGCTGATCTCGCTCATCGAAGAGCTGTAAGCAAGGAAGAGGGAGAACAATTTGCAAAAGAAAATGGACTCTTATTCTTAGAGGCTTCTGCTAGAACAGCACAAAATGTTGAGGAGGCATTCATAAAGACTGCAGCTAAAATACTTCAAAATATTCAAGAAGGTGTCTTTGATGTATCCAATGAGTCATCTGGGATCAAGGTCGGTTACGGGCGTCCTCAAGGGCCATCGGGGGCGAGAGATGGAACAGTTGCACAGCGAGGTGGATGCTGTGGCTAA MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMSIMLVGNKADLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGVFDVSNESSGIKVGYGRPQGPSGARDGTVAQRGGCCG
BLAST of Lsi05G004620 vs. Swiss-Prot
Match: RAB1B_ARATH (Ras-related protein RABB1b OS=Arabidopsis thaliana GN=RABB1B PE=2 SV=1) HSP 1 Score: 401.7 bits (1031), Expect = 4.8e-111 Identity = 195/211 (92.42%), Postives = 206/211 (97.63%), Query Frame = 1
BLAST of Lsi05G004620 vs. Swiss-Prot
Match: RAB1C_ARATH (Ras-related protein RABB1c OS=Arabidopsis thaliana GN=RABB1C PE=1 SV=1) HSP 1 Score: 375.6 bits (963), Expect = 3.7e-103 Identity = 184/211 (87.20%), Postives = 196/211 (92.89%), Query Frame = 1
BLAST of Lsi05G004620 vs. Swiss-Prot
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1) HSP 1 Score: 356.3 bits (913), Expect = 2.3e-97 Identity = 177/210 (84.29%), Postives = 190/210 (90.48%), Query Frame = 1
BLAST of Lsi05G004620 vs. Swiss-Prot
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1) HSP 1 Score: 352.1 bits (902), Expect = 4.4e-96 Identity = 176/210 (83.81%), Postives = 189/210 (90.00%), Query Frame = 1
BLAST of Lsi05G004620 vs. Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1) HSP 1 Score: 345.9 bits (886), Expect = 3.1e-94 Identity = 173/213 (81.22%), Postives = 186/213 (87.32%), Query Frame = 1
BLAST of Lsi05G004620 vs. TrEMBL
Match: A0A0A0LC04_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G597310 PE=4 SV=1) HSP 1 Score: 422.2 bits (1084), Expect = 3.8e-115 Identity = 210/211 (99.53%), Postives = 210/211 (99.53%), Query Frame = 1
BLAST of Lsi05G004620 vs. TrEMBL
Match: A0A061EC68_THECC (GTP-binding 2 OS=Theobroma cacao GN=TCM_017012 PE=4 SV=1) HSP 1 Score: 416.0 bits (1068), Expect = 2.7e-113 Identity = 205/211 (97.16%), Postives = 208/211 (98.58%), Query Frame = 1
BLAST of Lsi05G004620 vs. TrEMBL
Match: A0A0D2VKG4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G093900 PE=4 SV=1) HSP 1 Score: 412.9 bits (1060), Expect = 2.3e-112 Identity = 203/211 (96.21%), Postives = 208/211 (98.58%), Query Frame = 1
BLAST of Lsi05G004620 vs. TrEMBL
Match: A0A0B0NKZ8_GOSAR (Ras-related RABB1b-like protein OS=Gossypium arboreum GN=F383_20317 PE=4 SV=1) HSP 1 Score: 412.9 bits (1060), Expect = 2.3e-112 Identity = 203/211 (96.21%), Postives = 208/211 (98.58%), Query Frame = 1
BLAST of Lsi05G004620 vs. TrEMBL
Match: B9SJ79_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1478360 PE=4 SV=1) HSP 1 Score: 411.4 bits (1056), Expect = 6.7e-112 Identity = 202/210 (96.19%), Postives = 206/210 (98.10%), Query Frame = 1
BLAST of Lsi05G004620 vs. TAIR10
Match: AT4G35860.1 (AT4G35860.1 GTP-binding 2) HSP 1 Score: 401.7 bits (1031), Expect = 2.7e-112 Identity = 195/211 (92.42%), Postives = 206/211 (97.63%), Query Frame = 1
BLAST of Lsi05G004620 vs. TAIR10
Match: AT4G17170.1 (AT4G17170.1 RAB GTPase homolog B1C) HSP 1 Score: 375.6 bits (963), Expect = 2.1e-104 Identity = 184/211 (87.20%), Postives = 196/211 (92.89%), Query Frame = 1
BLAST of Lsi05G004620 vs. TAIR10
Match: AT4G17160.1 (AT4G17160.1 RAB GTPase homolog B1A) HSP 1 Score: 305.1 bits (780), Expect = 3.4e-83 Identity = 152/212 (71.70%), Postives = 175/212 (82.55%), Query Frame = 1
BLAST of Lsi05G004620 vs. TAIR10
Match: AT5G45750.1 (AT5G45750.1 RAB GTPase homolog A1C) HSP 1 Score: 197.2 bits (500), Expect = 1.0e-50 Identity = 99/213 (46.48%), Postives = 137/213 (64.32%), Query Frame = 1
BLAST of Lsi05G004620 vs. TAIR10
Match: AT1G06400.1 (AT1G06400.1 Ras-related small GTP-binding family protein) HSP 1 Score: 196.4 bits (498), Expect = 1.7e-50 Identity = 98/208 (47.12%), Postives = 133/208 (63.94%), Query Frame = 1
BLAST of Lsi05G004620 vs. NCBI nr
Match: gi|659098152|ref|XP_008450002.1| (PREDICTED: ras-related protein RABB1b [Cucumis melo]) HSP 1 Score: 422.5 bits (1085), Expect = 4.2e-115 Identity = 210/211 (99.53%), Postives = 210/211 (99.53%), Query Frame = 1
BLAST of Lsi05G004620 vs. NCBI nr
Match: gi|449455912|ref|XP_004145694.1| (PREDICTED: ras-related protein RABB1b [Cucumis sativus]) HSP 1 Score: 422.2 bits (1084), Expect = 5.5e-115 Identity = 210/211 (99.53%), Postives = 210/211 (99.53%), Query Frame = 1
BLAST of Lsi05G004620 vs. NCBI nr
Match: gi|700203099|gb|KGN58232.1| (hypothetical protein Csa_3G597310 [Cucumis sativus]) HSP 1 Score: 422.2 bits (1084), Expect = 5.5e-115 Identity = 210/211 (99.53%), Postives = 210/211 (99.53%), Query Frame = 1
BLAST of Lsi05G004620 vs. NCBI nr
Match: gi|590646549|ref|XP_007031654.1| (GTP-binding 2 [Theobroma cacao]) HSP 1 Score: 416.0 bits (1068), Expect = 3.9e-113 Identity = 205/211 (97.16%), Postives = 208/211 (98.58%), Query Frame = 1
BLAST of Lsi05G004620 vs. NCBI nr
Match: gi|823248650|ref|XP_012456982.1| (PREDICTED: ras-related protein RABB1b-like [Gossypium raimondii]) HSP 1 Score: 412.9 bits (1060), Expect = 3.3e-112 Identity = 203/211 (96.21%), Postives = 208/211 (98.58%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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