Lsi03G017300.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G017300.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Seed maturation protein LEA 4
Location	chr03 : 28687574 .. 28689823 (-)
Sequence length	321

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATCGGGAAGGAACGCAGCGGAGTCGGCGAAGGAATCGGCCGCCAATGTGGGGGCCTCTGCCAAAGCTGGCATGGAAAAGACCAAAGCCACTGCTCAAGAAAAGGTTTAATTACAATTTCTTTTTTCAAATTGCAAATTTAATTTCGGATATTACAATTTTGATATTTATCTTTATTTAACCTATTCTTTTGACTTTTATAGGTTTTTAAAACTTTAAAACAAAGGGGTCTTAGCTTGACGAACTTTTCTTCATTTAGAAGAGTTGCACACATGTTCAGTTCATTTTGTGCAAACTCTTTGTTCATAAATTTTATTTTATTTTATTTTATTTTTTCTCGACAGTTCTTTTATTTGGTGAGACTTCTATTTTTGTAAATAACGTGTTTGAAGTTAGTTAATGTCGTCTTTTGCTATGAACTTCTGCTCATTTATTTTGCTCTATTTCACAAGAAATGAGTATTTAGAAAGTAATAGAAAAGTGAATTATGTCAAAATTGCCCTAAAAATTATAGAAAAATTTTACGGTTGATATTTTATCTATTTATAATTTTTTTATATTCTAAAGGATTTGTAATTTTTCTAAATAAAAAACTCTAGTATTTAGAGAGTAATATAAAACTGAATCTTGTCAAAATTGAGATAAAAATTATTTTGCTTCTAGACTTGATTATTCTAGAGGATTTGTGATTTTTTTTCAACAATTAGCAAAAAAAAAGAATGTAGCTATTTTTTAGATAAAAATTATTTTTACTACTGGACTTAATTATTCTAATGAGGATTTGTAATTTTTTTTCAACAATTACCCAAAAAAAAAAAGAATTGTAGTTATTTTTTAAAATTAGAACATTGACGAAACGAAAAAAAGTTGGAACGTTGACGAAAAAGGGAGGGTGGCCGGTGGTGTTTTGTAATTAATTAATGCAAGGTTTTGAATATGATATGACAAACCCACGCTATTATAAATATGGTAGATAAAACACACATAAATATAGTAAATAAAACACGTGGTATAATGGATATAATTAATAATTTATTCTAAAAAAAAAAATAGTAACTCAAGTAATAGTCACATACATGACACACATACCTACTTAGCTTAGCCTATAAATACTTATGGAGGCAAAATATTGGATTTAGTATGATATTTAATACCTACTTAGCCTACAAATATTTATACCTACCTACGATATTTATGAAGCCAAAATATTGGATTTATTGTTAAAAATAGTCCTTTAGAAAACAATTTGCAAAAAACTAGTTGTATGGAATATTTATATTAGTTTCTACAACCCACTAAAAGTTTATGTATGTATTGAAAGTTTTCTTTTATTTTCTTTGTATCAGAAGTTTTGTTCTTTTATTTTCTTTTCACTTTTTTTTTTTAAATTTATTTTGGATCTTTTATTTTCTTTTCACTTTTTTTTAAAAATTATTTTGGACCTTATTTTCTTTTTTTAGTCCGTACAAGTTTATATGTATGTAAAATAACTTTTATTCTTTCACTGTTTTTATATATTTTGGACCTTATTTTCATTTTTTTTAAGATTTAAATTAACAATAAAATGTTTAATTAATTTTTTTAAAAAAATAAACGAAAATTAAAAATTATCAAACTATATTTTTTAATTTAAAGAATAAAAAATAAAAAATGAAAATATTTAAATAGTCAAGCTTAAGTCAGGGTATTGTAGTGTCTGACTTGCATCGTGTGAGTCTCATATTGAGAGTCAAGGAATTGGAAAATTTTACCGTTTATCTATATATATATATATATATATATATATATATATATTTTAAAAAAAAGTTTCAATTTGCAGAAAAAATTTATTTAATTCTATTTGTAAAAATACTTTTCATACAAGGTTTTTTTTCAGGACTTTTTCATACTATTCTTTTAAAGAGATTATATTTTAACACTAGTTTCCAAAATATTTGTGTAGCGGACTATTAATTTGAATTGACACTATCATTAAATAATATATTAAATTAGACAATAAAAACACATCATATAGTTAACGCGTGCAAATGCCAGGTGGACAAAATGCGGGCCCACGATCCAATTGAGAAAGACATGGCGAGAGAAAGGAAAGAGGGGAGGGTTCAGGAGGCTGAGCTGGACAAGCAGCAGGCGCGTGCAGAACACGCAGCAGAGAAGCAGGCCGGTTCAGGACCCGGGACCCGTGTCGGGTTGGGAACCGGGACTGGAACTGGAACCCACACCTATGACCCGACCGTGGGTAGATAA

mRNA sequence

ATGCAATCGGGAAGGAACGCAGCGGAGTCGGCGAAGGAATCGGCCGCCAATGTGGGGGCCTCTGCCAAAGCTGGCATGGAAAAGACCAAAGCCACTGCTCAAGAAAAGGTGGACAAAATGCGGGCCCACGATCCAATTGAGAAAGACATGGCGAGAGAAAGGAAAGAGGGGAGGGTTCAGGAGGCTGAGCTGGACAAGCAGCAGGCGCGTGCAGAACACGCAGCAGAGAAGCAGGCCGGTTCAGGACCCGGGACCCGTGTCGGGTTGGGAACCGGGACTGGAACTGGAACCCACACCTATGACCCGACCGTGGGTAGATAA

Coding sequence (CDS)

ATGCAATCGGGAAGGAACGCAGCGGAGTCGGCGAAGGAATCGGCCGCCAATGTGGGGGCCTCTGCCAAAGCTGGCATGGAAAAGACCAAAGCCACTGCTCAAGAAAAGGTGGACAAAATGCGGGCCCACGATCCAATTGAGAAAGACATGGCGAGAGAAAGGAAAGAGGGGAGGGTTCAGGAGGCTGAGCTGGACAAGCAGCAGGCGCGTGCAGAACACGCAGCAGAGAAGCAGGCCGGTTCAGGACCCGGGACCCGTGTCGGGTTGGGAACCGGGACTGGAACTGGAACCCACACCTATGACCCGACCGTGGGTAGATAA

Protein sequence

MQSGRNAAESAKESAANVGASAKAGMEKTKATAQEKVDKMRAHDPIEKDMARERKEGRVQEAELDKQQARAEHAAEKQAGSGPGTRVGLGTGTGTGTHTYDPTVGR

Homology

[Close]

BLAST of Lsi03G017300.1 vs. Swiss-Prot
Match: LEA11_HELAN (11 kDa late embryogenesis abundant protein OS=Helianthus annuus PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.5e-20
Identity = 63/103 (61.17%), Postives = 76/103 (73.79%), Query Frame = 1


Query: 1   MQSGRNAAESAKESAANVGASAKAGMEKTKATAQEKVDKMRAHDPIEKDMARERKEGRVQ 60
           MQSG+NAA SAKE+AANV ASAKAGMEKTKA+ QEK +KM AHDP++K+MARE+KE R  
Sbjct: 1   MQSGKNAAASAKETAANVAASAKAGMEKTKASLQEKGEKMTAHDPMQKEMAREKKEERKH 60

Query: 61  EAELDKQQARAEHAAEKQAGSGPGTRVGLGTGTGTGTHTYDPT 104
           EAE +KQ A+  +AA+KQ            TG GTGTH+Y  T
Sbjct: 61  EAEYEKQAAKEHNAAQKQT-----------TGIGTGTHSYTTT 92

[Close]

BLAST of Lsi03G017300.1 vs. Swiss-Prot
Match: PM1_SOYBN (18 kDa seed maturation protein OS=Glycine max GN=GMPM1 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.3e-19
Identity = 59/106 (55.66%), Postives = 77/106 (72.64%), Query Frame = 1


Query: 1   MQSGRNAAESAKESAANVGASAKAGMEKTKATAQEKVDKMRAHDPIEKDMARERKEGRVQ 60
           MQ G+ A ES KE+A N+GASAKAGMEKTKAT QEK ++M A DP++K++A ++KE ++ 
Sbjct: 1   MQGGKKAGESIKETATNIGASAKAGMEKTKATVQEKAERMTARDPVQKELATQKKEAKMN 60

Query: 61  EAELDKQQARAEHAAEKQAGSGPGTRVGLG---TGTGTGTHTYDPT 104
           +AELDKQ AR  + A KQ+ +  G  +G G   TGTGTGT TY  T
Sbjct: 61  QAELDKQAARQHNTAAKQSATTAG-HMGHGHHTTGTGTGTATYSTT 105

[Close]

BLAST of Lsi03G017300.1 vs. Swiss-Prot
Match: LE25_SOLLC (Protein LE25 OS=Solanum lycopersicum GN=LE25 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.8e-11
Identity = 49/100 (49.00%), Postives = 65/100 (65.00%), Query Frame = 1


Query: 1   MQSGRNAAESAKESAANVGASAKAGMEKTKATAQEKVDKMRAHDPIEKDMARERKEGRVQ 60
           MQ+G++AA           ++AKAGMEKTKA  QEK ++M   DP++K+MA E+KE RV 
Sbjct: 1   MQTGKDAA-----------SAAKAGMEKTKANVQEKAERMTTRDPLKKEMATEKKEDRVA 60

Query: 61  EAELDKQQARAEHAAEKQAGSGPGTRVGLGTGTG-TGTHT 100
            AE+ K+ A+A+HAAEKQ  +  GT     TG G TG HT
Sbjct: 61  AAEMGKRDAKAQHAAEKQGAATTGTGT---TGYGATGNHT 86

[Close]

BLAST of Lsi03G017300.1 vs. Swiss-Prot
Match: LEA13_GOSHI (Late embryogenesis abundant protein D-113 OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 4.1e-10
Identity = 47/89 (52.81%), Postives = 59/89 (66.29%), Query Frame = 1


Query: 13  ESAANVGASAKAGMEKTKATAQEKVDKMRAHDPIEKDMARERKEGRVQEAELDKQQARAE 72
           +S  +  ASAKAGMEK KA+ QEKVD+M+  DP EK+MARERKE R ++AEL KQ+AR  
Sbjct: 2   QSMKDAAASAKAGMEKAKASMQEKVDQMKTRDPNEKEMARERKEERQEDAELRKQEARHH 61

Query: 73  HAAEKQAGSGPGTRVGLGTGTGTGTHTYD 102
           +A     G G     G+G GTG  T  Y+
Sbjct: 62  NATAGHVGGG-----GIG-GTGYTTAGYN 84

[Close]

BLAST of Lsi03G017300.1 vs. TrEMBL
Match: A0A0A0LBV1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G808370 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 3.0e-36
Identity = 90/105 (85.71%), Postives = 95/105 (90.48%), Query Frame = 1


Query: 1   MQSGRNAAESAKESAANVGASAKAGMEKTKATAQEKVDKMRAHDPIEKDMARERKEGRVQ 60
           MQSGRNAAE+ KESAANVGASAKAGMEKTKATAQEKVDKMRAHDP EKDMARERK+ R+Q
Sbjct: 1   MQSGRNAAEAMKESAANVGASAKAGMEKTKATAQEKVDKMRAHDPFEKDMARERKDERIQ 60

Query: 61  EAELDKQQARAEHAAEKQAGSGPGTRVGLGTGTGTGTHTYDPTVG 106
           EAELDKQQAR EHAAE+Q G+GPGTR GLG    TGTHTYDPTVG
Sbjct: 61  EAELDKQQARVEHAAERQTGTGPGTRTGLG----TGTHTYDPTVG 101

[Close]

BLAST of Lsi03G017300.1 vs. TrEMBL
Match: A0A103YMX2_CYNCS (Late embryogenesis abundant protein, LEA-25/LEA-D113 (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_009534 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.7e-18
Identity = 61/103 (59.22%), Postives = 77/103 (74.76%), Query Frame = 1


Query: 1   MQSGRNAAESAKESAANVGASAKAGMEKTKATAQEKVDKMRAHDPIEKDMARERKEGRVQ 60
           MQS +NAA S KESAAN+ ASAKAGM+KTKAT QEK ++M AHDP++K+MA E+KE R  
Sbjct: 1   MQSAKNAAASVKESAANMAASAKAGMDKTKATMQEKGERMTAHDPMQKEMATEKKEARKN 60

Query: 61  EAELDKQQARAEHAAEKQAGSGPGTRVGLGTGTGTGTHTYDPT 104
           +AE +KQ AR ++A ++QA     T    GTGTGTGTH+Y  T
Sbjct: 61  QAEYEKQVARDQNAVQRQA-----TEATTGTGTGTGTHSYSTT 98

[Close]

BLAST of Lsi03G017300.1 vs. TrEMBL
Match: A0A059A421_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_K01836 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.8e-18
Identity = 66/109 (60.55%), Postives = 78/109 (71.56%), Query Frame = 1


Query: 1   MQSGRNAAESAKESAANVGASAKAGMEKTKATAQEKVDKMRAHDPIEKDMARERKEGRVQ 60
           MQ  +NAA SAKE+AANVGASAKAGMEKTKA AQEK++KM AHDP+EK MA E+K  R+ 
Sbjct: 6   MQPMKNAAASAKEAAANVGASAKAGMEKTKAVAQEKMEKMTAHDPVEKQMATEKKHERID 65

Query: 61  EAELDKQQARAEHAAEKQAGSGPG----TRVGLGTGTGTGTHTYDPTVG 106
           +AEL+KQ AR E+AA KQ+ +  G    T  G GT T TGT     T G
Sbjct: 66  QAELNKQMAREENAASKQSTAATGHLANTTTGPGTTTTTGTTATYSTTG 114

[Close]

BLAST of Lsi03G017300.1 vs. TrEMBL
Match: A0A165YHG0_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_013554 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.8e-17
Identity = 60/103 (58.25%), Postives = 77/103 (74.76%), Query Frame = 1


Query: 1   MQSGRNAAESAKESAANVGASAKAGMEKTKATAQEKVDKMRAHDPIEKDMARERKEGRVQ 60
           MQS +NAA SAKESAAN+ A+AK+GMEKTKAT QEK ++M AHDP+EKDMA ++KE R+ 
Sbjct: 1   MQSAKNAAASAKESAANMAATAKSGMEKTKATLQEKGERMTAHDPLEKDMATQKKEERIN 60

Query: 61  EAELDKQQARAEHAAEKQAGSGPGTRVGLGTGTGTGTHTYDPT 104
           +AE +KQ+A+  +AA KQA +         TGTGTG H+Y  T
Sbjct: 61  QAEWNKQEAKELNAANKQATA--------ATGTGTGAHSYSTT 95

[Close]

BLAST of Lsi03G017300.1 vs. TrEMBL
Match: A0A103XPZ6_CYNCS (Late embryogenesis abundant protein, LEA-25/LEA-D113 OS=Cynara cardunculus var. scolymus GN=Ccrd_003231 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.4e-17
Identity = 60/97 (61.86%), Postives = 74/97 (76.29%), Query Frame = 1


Query: 1  MQSGRNAAESAKESAANVGASAKAGMEKTKATAQEKVDKMRAHDPIEKDMARERKEGRVQ 60
          MQ+G+NAA S KESAAN+ ASAKAGMEKTKAT QEK +KM AHDP++K+MARE+K+ R  
Sbjct: 1  MQTGKNAAASVKESAANMAASAKAGMEKTKATMQEKGEKMTAHDPMQKEMAREKKDERKH 60

Query: 61 EAELDKQQARAEHAAEKQAGSGPGTRVGLGTGTGTGT 98
          EAE +KQ AR ++AA++QA    GT     TG  TGT
Sbjct: 61 EAEYEKQAAREQNAAQRQAAGTTGTHTYSTTGDYTGT 97

[Close]

BLAST of Lsi03G017300.1 vs. TAIR10
Match: AT5G06760.1 (AT5G06760.1 Late Embryogenesis Abundant 4-5)

HSP 1 Score: 77.4 bits (189), Expect = 5.9e-15
Identity = 48/99 (48.48%), Postives = 70/99 (70.71%), Query Frame = 1


Query: 9  ESAKESAANVGASAKAGMEKTKATAQEKVDKMRAHDPIEKDMARERKEGRVQEAELDKQQ 68
          +S KE+A+N+ ASAK+GM+KTKAT +EK +KM+  DP++K MA + KE ++ +AE+ K++
Sbjct: 2  QSMKETASNIAASAKSGMDKTKATLEEKAEKMKTRDPVQKQMATQVKEDKINQAEMQKRE 61

Query: 69 ARAEHAAEKQAGSGPGTRVGLGTGT---------GTGTH 99
           R  +AA K+A +G GT +GLGT T         GTGTH
Sbjct: 62 TRQHNAAMKEA-AGAGTGLGLGTATHSTTGQVGHGTGTH 99

[Close]

BLAST of Lsi03G017300.1 vs. NCBI nr
Match: gi|700204175|gb|KGN59308.1| (hypothetical protein Csa_3G808370 [Cucumis sativus])

HSP 1 Score: 159.1 bits (401), Expect = 4.3e-36
Identity = 90/105 (85.71%), Postives = 95/105 (90.48%), Query Frame = 1


Query: 1   MQSGRNAAESAKESAANVGASAKAGMEKTKATAQEKVDKMRAHDPIEKDMARERKEGRVQ 60
           MQSGRNAAE+ KESAANVGASAKAGMEKTKATAQEKVDKMRAHDP EKDMARERK+ R+Q
Sbjct: 1   MQSGRNAAEAMKESAANVGASAKAGMEKTKATAQEKVDKMRAHDPFEKDMARERKDERIQ 60

Query: 61  EAELDKQQARAEHAAEKQAGSGPGTRVGLGTGTGTGTHTYDPTVG 106
           EAELDKQQAR EHAAE+Q G+GPGTR GLG    TGTHTYDPTVG
Sbjct: 61  EAELDKQQARVEHAAERQTGTGPGTRTGLG----TGTHTYDPTVG 101

[Close]

BLAST of Lsi03G017300.1 vs. NCBI nr
Match: gi|976929192|gb|KVI12051.1| (Late embryogenesis abundant protein, LEA-25/LEA-D113, partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 100.1 bits (248), Expect = 2.4e-18
Identity = 61/103 (59.22%), Postives = 77/103 (74.76%), Query Frame = 1


Query: 1   MQSGRNAAESAKESAANVGASAKAGMEKTKATAQEKVDKMRAHDPIEKDMARERKEGRVQ 60
           MQS +NAA S KESAAN+ ASAKAGM+KTKAT QEK ++M AHDP++K+MA E+KE R  
Sbjct: 1   MQSAKNAAASVKESAANMAASAKAGMDKTKATMQEKGERMTAHDPMQKEMATEKKEARKN 60

Query: 61  EAELDKQQARAEHAAEKQAGSGPGTRVGLGTGTGTGTHTYDPT 104
           +AE +KQ AR ++A ++QA     T    GTGTGTGTH+Y  T
Sbjct: 61  QAEYEKQVARDQNAVQRQA-----TEATTGTGTGTGTHSYSTT 98

[Close]

BLAST of Lsi03G017300.1 vs. NCBI nr
Match: gi|1170744|sp|P46515.1|LEA11_HELAN (RecName: Full=11 kDa late embryogenesis abundant protein; AltName: Full=DS11 [Helianthus annuus])

HSP 1 Score: 100.1 bits (248), Expect = 2.4e-18
Identity = 63/103 (61.17%), Postives = 76/103 (73.79%), Query Frame = 1


Query: 1   MQSGRNAAESAKESAANVGASAKAGMEKTKATAQEKVDKMRAHDPIEKDMARERKEGRVQ 60
           MQSG+NAA SAKE+AANV ASAKAGMEKTKA+ QEK +KM AHDP++K+MARE+KE R  
Sbjct: 1   MQSGKNAAASAKETAANVAASAKAGMEKTKASLQEKGEKMTAHDPMQKEMAREKKEERKH 60

Query: 61  EAELDKQQARAEHAAEKQAGSGPGTRVGLGTGTGTGTHTYDPT 104
           EAE +KQ A+  +AA+KQ            TG GTGTH+Y  T
Sbjct: 61  EAEYEKQAAKEHNAAQKQT-----------TGIGTGTHSYTTT 92

[Close]

BLAST of Lsi03G017300.1 vs. NCBI nr
Match: gi|629081655|gb|KCW48100.1| (hypothetical protein EUGRSUZ_K01836, partial [Eucalyptus grandis])

HSP 1 Score: 99.4 bits (246), Expect = 4.1e-18
Identity = 66/109 (60.55%), Postives = 78/109 (71.56%), Query Frame = 1


Query: 1   MQSGRNAAESAKESAANVGASAKAGMEKTKATAQEKVDKMRAHDPIEKDMARERKEGRVQ 60
           MQ  +NAA SAKE+AANVGASAKAGMEKTKA AQEK++KM AHDP+EK MA E+K  R+ 
Sbjct: 6   MQPMKNAAASAKEAAANVGASAKAGMEKTKAVAQEKMEKMTAHDPVEKQMATEKKHERID 65

Query: 61  EAELDKQQARAEHAAEKQAGSGPG----TRVGLGTGTGTGTHTYDPTVG 106
           +AEL+KQ AR E+AA KQ+ +  G    T  G GT T TGT     T G
Sbjct: 66  QAELNKQMAREENAASKQSTAATGHLANTTTGPGTTTTTGTTATYSTTG 114

[Close]

BLAST of Lsi03G017300.1 vs. NCBI nr
Match: gi|702493464|ref|XP_010036485.1| (PREDICTED: 18 kDa seed maturation protein [Eucalyptus grandis])

HSP 1 Score: 99.4 bits (246), Expect = 4.1e-18
Identity = 66/109 (60.55%), Postives = 78/109 (71.56%), Query Frame = 1


Query: 1   MQSGRNAAESAKESAANVGASAKAGMEKTKATAQEKVDKMRAHDPIEKDMARERKEGRVQ 60
           MQ  +NAA SAKE+AANVGASAKAGMEKTKA AQEK++KM AHDP+EK MA E+K  R+ 
Sbjct: 1   MQPMKNAAASAKEAAANVGASAKAGMEKTKAVAQEKMEKMTAHDPVEKQMATEKKHERID 60

Query: 61  EAELDKQQARAEHAAEKQAGSGPG----TRVGLGTGTGTGTHTYDPTVG 106
           +AEL+KQ AR E+AA KQ+ +  G    T  G GT T TGT     T G
Sbjct: 61  QAELNKQMAREENAASKQSTAATGHLANTTTGPGTTTTTGTTATYSTTG 109

The following BLAST results are available for this feature:

BLAST of Lsi03G017300.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LEA11_HELAN	1.5e-20	61.17	11 kDa late embryogenesis abundant protein OS=Helianthus annuus PE=2 SV=1	[more]
PM1_SOYBN	6.3e-19	55.66	18 kDa seed maturation protein OS=Glycine max GN=GMPM1 PE=2 SV=1	[more]
LE25_SOLLC	4.8e-11	49.00	Protein LE25 OS=Solanum lycopersicum GN=LE25 PE=2 SV=1	[more]
LEA13_GOSHI	4.1e-10	52.81	Late embryogenesis abundant protein D-113 OS=Gossypium hirsutum PE=2 SV=2	[more]

BLAST of Lsi03G017300.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBV1_CUCSA	3.0e-36	85.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G808370 PE=4 SV=1	[more]
A0A103YMX2_CYNCS	1.7e-18	59.22	Late embryogenesis abundant protein, LEA-25/LEA-D113 (Fragment) OS=Cynara cardun...	[more]
A0A059A421_EUCGR	2.8e-18	60.55	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_K01836 PE=4 ...	[more]
A0A165YHG0_DAUCA	1.8e-17	58.25	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_013554 PE=4 SV=1	[more]
A0A103XPZ6_CYNCS	2.4e-17	61.86	Late embryogenesis abundant protein, LEA-25/LEA-D113 OS=Cynara cardunculus var. ...	[more]

BLAST of Lsi03G017300.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G06760.1	5.9e-15	48.48	Late Embryogenesis Abundant 4-5	[more]

BLAST of Lsi03G017300.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700204175\|gb\|KGN59308.1\|	4.3e-36	85.71	hypothetical protein Csa_3G808370 [Cucumis sativus]	[more]
gi\|976929192\|gb\|KVI12051.1\|	2.4e-18	59.22	Late embryogenesis abundant protein, LEA-25/LEA-D113, partial [Cynara cardunculu...	[more]
gi\|1170744\|sp\|P46515.1\|LEA11_HELAN	2.4e-18	61.17	RecName: Full=11 kDa late embryogenesis abundant protein; AltName: Full=DS11 [He...	[more]
gi\|629081655\|gb\|KCW48100.1\|	4.1e-18	60.55	hypothetical protein EUGRSUZ_K01836, partial [Eucalyptus grandis]	[more]
gi\|702493464\|ref\|XP_010036485.1\|	4.1e-18	60.55	PREDICTED: 18 kDa seed maturation protein [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0009790	embryo development

Vocabulary: **INTERPRO**
Term	Definition
IPR005513	LEA_1

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009790	embryo development
biological_process	GO:0009409	response to cold
biological_process	GO:0006970	response to osmotic stress
biological_process	GO:0009414	response to water deprivation
biological_process	GO:0048316	seed development
cellular_component	GO:0005829	cytosol
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi03G017300	Lsi03G017300	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi03G017300.1.CDS.2	Lsi03G017300.1.CDS.2	CDS
Lsi03G017300.1.CDS.1	Lsi03G017300.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi03G017300.1	Lsi03G017300.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005513	Late embryogenesis abundant protein, LEA-25/LEA-D113	PRODOM	PD005538		coord: 18..79 score: 7.0
IPR005513	Late embryogenesis abundant protein, LEA-25/LEA-D113	PFAM	PF03760	LEA_1	coord: 9..78 score: 8.5
None	No IPR available	unknown	Coil	Coil	coord: 52..79 scor
None	No IPR available	PANTHER	PTHR33493	FAMILY NOT NAMED	coord: 2..103 score: 5.2
None	No IPR available	PANTHER	PTHR33493:SF2	LATE EMBRYOGENESIS ABUNDANT PROTEIN 4-5	coord: 2..103 score: 5.2