CmoCh16G012640 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAGAGAACGCAACGCCAGTGGTGCTCCGCATGAAGAAGGCATTGACGAAACTCACTGCCTTCGTCCGCCTCTGTCACGTTTTCCGGCCGCCTTCCCGGCGGATGCGATCATTCGATTCCGACGGTCGGACGGCAGGTCTACGGAGTATCTTGGGAGACGAAAGCATCGTCGAGAAGTGCTCGGTGAGAAAGCTCGAGCGTGGTGAGAGTTCGAGGAATGGAAGCTGTGAAGACGATGTCGATCAGCGAGCGCAGATTTTCATCGACAATTTCCGCCGTCAATTGATGCTAGAAAGACAAATTTCTTTAAAATTGAGGTACTATGGCATTAATAGCTCTGAAATCGATTACGAAGCGAGATCTCCGCCGTTCTCGTCCTCGATTCGTTGA ATGGCAGAGAACGCAACGCCAGTGGTGCTCCGCATGAAGAAGGCATTGACGAAACTCACTGCCTTCGTCCGCCTCTGTCACGTTTTCCGGCCGCCTTCCCGGCGGATGCGATCATTCGATTCCGACGGTCGGACGGCAGGTCTACGGAGTATCTTGGGAGACGAAAGCATCGTCGAGAAGTGCTCGGTGAGAAAGCTCGAGCGTGGTGAGAGTTCGAGGAATGGAAGCTGTGAAGACGATGTCGATCAGCGAGCGCAGATTTTCATCGACAATTTCCGCCGTCAATTGATGCTAGAAAGACAAATTTCTTTAAAATTGAGGTACTATGGCATTAATAGCTCTGAAATCGATTACGAAGCGAGATCTCCGCCGTTCTCGTCCTCGATTCGTTGA ATGGCAGAGAACGCAACGCCAGTGGTGCTCCGCATGAAGAAGGCATTGACGAAACTCACTGCCTTCGTCCGCCTCTGTCACGTTTTCCGGCCGCCTTCCCGGCGGATGCGATCATTCGATTCCGACGGTCGGACGGCAGGTCTACGGAGTATCTTGGGAGACGAAAGCATCGTCGAGAAGTGCTCGGTGAGAAAGCTCGAGCGTGGTGAGAGTTCGAGGAATGGAAGCTGTGAAGACGATGTCGATCAGCGAGCGCAGATTTTCATCGACAATTTCCGCCGTCAATTGATGCTAGAAAGACAAATTTCTTTAAAATTGAGGTACTATGGCATTAATAGCTCTGAAATCGATTACGAAGCGAGATCTCCGCCGTTCTCGTCCTCGATTCGTTGA
BLAST of CmoCh16G012640 vs. TrEMBL
Match: A0A0A0L4Z8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004530 PE=4 SV=1) HSP 1 Score: 133.3 bits (334), Expect = 2.2e-28 Identity = 75/125 (60.00%), Postives = 92/125 (73.60%), Query Frame = 1
BLAST of CmoCh16G012640 vs. TrEMBL
Match: A0A0A0L6A3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004520 PE=4 SV=1) HSP 1 Score: 89.4 bits (220), Expect = 3.6e-15 Identity = 61/123 (49.59%), Postives = 73/123 (59.35%), Query Frame = 1
BLAST of CmoCh16G012640 vs. TrEMBL
Match: B9ILG0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s03620g PE=4 SV=2) HSP 1 Score: 70.9 bits (172), Expect = 1.3e-09 Identity = 40/73 (54.79%), Postives = 50/73 (68.49%), Query Frame = 1
BLAST of CmoCh16G012640 vs. TrEMBL
Match: B9RNM1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0918640 PE=4 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 1.9e-08 Identity = 46/122 (37.70%), Postives = 70/122 (57.38%), Query Frame = 1
BLAST of CmoCh16G012640 vs. TrEMBL
Match: A0A067KMD1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07021 PE=4 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 1.6e-07 Identity = 44/120 (36.67%), Postives = 67/120 (55.83%), Query Frame = 1
BLAST of CmoCh16G012640 vs. TAIR10
Match: AT5G57510.1 (AT5G57510.1 unknown protein) HSP 1 Score: 48.1 bits (113), Expect = 4.7e-06 Identity = 25/52 (48.08%), Postives = 37/52 (71.15%), Query Frame = 1
BLAST of CmoCh16G012640 vs. NCBI nr
Match: gi|700200554|gb|KGN55687.1| (hypothetical protein Csa_3G004530 [Cucumis sativus]) HSP 1 Score: 133.3 bits (334), Expect = 3.1e-28 Identity = 75/125 (60.00%), Postives = 92/125 (73.60%), Query Frame = 1
BLAST of CmoCh16G012640 vs. NCBI nr
Match: gi|778688278|ref|XP_011652707.1| (PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus]) HSP 1 Score: 125.9 bits (315), Expect = 5.0e-26 Identity = 71/115 (61.74%), Postives = 86/115 (74.78%), Query Frame = 1
BLAST of CmoCh16G012640 vs. NCBI nr
Match: gi|700200553|gb|KGN55686.1| (hypothetical protein Csa_3G004520 [Cucumis sativus]) HSP 1 Score: 89.4 bits (220), Expect = 5.2e-15 Identity = 61/123 (49.59%), Postives = 73/123 (59.35%), Query Frame = 1
BLAST of CmoCh16G012640 vs. NCBI nr
Match: gi|566214045|ref|XP_002324391.2| (hypothetical protein POPTR_0018s03620g [Populus trichocarpa]) HSP 1 Score: 70.9 bits (172), Expect = 1.9e-09 Identity = 40/73 (54.79%), Postives = 50/73 (68.49%), Query Frame = 1
BLAST of CmoCh16G012640 vs. NCBI nr
Match: gi|255548568|ref|XP_002515340.1| (PREDICTED: uncharacterized protein LOC8265180 [Ricinus communis]) HSP 1 Score: 67.0 bits (162), Expect = 2.8e-08 Identity = 46/122 (37.70%), Postives = 70/122 (57.38%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: None |