CmoCh15G005580 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCATGCCCTAAAGAAGGTGAAACTTTTTCCTATCTATATGCTAGTTGTTTAATATATACACACACACACACATATATAATATACACATAACATATGCTTTGTGTGTTTGGATGGTTCTATTCTGCAGCTACATACATTATTAAGACGCTTTTACATAATGTAGGATGATATAATAATATAATGCTACCGAGTGTAGTAGTCGTAGTAGTAGTAAAGTAAAGAAGGCGAGTTCAGTAGTAGAGGAATCATAAGCTCTCAATTATTATTAGTGTATTTCTGGGAACTTAAAACGTACTTGTTGCTTTTGAATGTTTATACTATATTGGATATTTTTCTTGAATTTGCTTTATTGTGACATTCATGCATTTGATTTTTTTTTTTTTAAATAATTTTTAACAATATTACTAAGATGGGTATGGGGGATGAATGAGGGATTTGAGCTTTAAGGGGTTCAAGTTGGCATATTCATGCATCTGGTTGGGGGTGCTTGTTTATTGTGAACCAGCCAACAAACAAGGAGTTAATTGGATTTAAATGATGAGGGGATGAATTTTTCTTGTTTTTATTTTATTATTGTTATTATTATTATTATTATTATTTTTAATTCACTTTGAAGTTCGTATTTTCAACTTTCAACTTTGTCTAATACGTATTTTGTATTTTGTATTTTAGTAAATCTTTGAATTTTTAAAAAAATTGGAAGTTTGGGTACTTTTTTGTCGTTTTAAATGTTCAGAAATAGATAAAATTCTCAAAAAAACTTAAATTAATATCTTGCGTTTGAACTTTTTCATTTAAACCTACAACTTCATTTATCCGTAGATAAATAAATTTAAAAAAAAACGTTAATTTATATTCCAAAGTTCTTACGAAAGTTTTGAGCTTTAATTAATACAATTATTTGTCAAGTTTTTTAATGGATATAATTAAATAAATAAGGGGTATAATTTATTTATTTATTTTCTCTAAATTATATTATTGGATAATGAAAGTCATGAGAGCATCATAAGGTAATGCAAGAGCTAAATTCCTTACAAGCTGGCTTCCGTTCCTTTCCTTAGCTTTGGTTTTCTATCCTTCACTTCCTTCTCCTGTAGACAAGGGTTAAACTATTCTTTCAAGGCTGGATGATCTGCTCCTACTCGAGCTTTCTTTCATATGCGGTCATGTAATATGTCGACAATATCATACCATTGTGGATAGTTGTATTTGTCTAACATGGTATCAGAACTATGCCCTAAACTTAGTCATGTCAATAGATTGAATTTCCTCGAATGTCGAACAAAAGACTCCAAAAGAAAAGGAGTCAAACCAGCTCGAAGGCATAGTAAAAAATGACTAACACTCCAAAAGAGTCGAGCCTCGATTAAGAGGAGGCGTACTTTGTTCGATGAGAGATGTTGGATAATGAAAGTCACACATCGGCTAATTTAGGGAATGATCATAGGTTTATAATCAAATAATACTCTCACCATTGATATGAGGCCTTCTGAGAAGCCTAAAACAAAGCCATAAGAATTTATACTCAAAGTGGACAATATTATATCATTGGGGAGAGTCGTGTTCGTCGTAAAACTGATAGCAGAAGTTCATTGAATGGCAGCAGCAAAGGGAGGAGTGTTCTTCAATTTCTGCTCCCCCACTGCACTACACTACACGTGAACTTCTCCTGTCGTGTAGCAACTAAAACCCTACTGCACTTTTGTTCTTTAGACAGACAACAAGAGAGAGAACGAACCATTTTACCCAAATAATTTCCCCATTTCCCATTCACTTTGGACTATAATCCTCCCTTCACCCCTCCCTCAAAAGACAACAAAAGAGAGCTGAAAAGGTCAGGGGTGAAAGAAACTTAACAAAGCGTTCATAATCATATCATATACACACTGATTGTTACTTACAGAATCACTTAGAGTGCAATGCTGCCTTTGGTTGGGAATCCACAAACAGAAATGTCCTCTGTCAGTCGATTTCCCTTCTCGAGCTGGATGTTTGTTGTCCCAACCATTTTTCTAAGTTCAAAGTGATTCCGGCACGTAGGTTCATAACCAAACCAACTACTCCAACAGCACTCATCTATAAACCCGTTACGGGTACAAATAACATAAAGAAATGTAATCAACGTAACCCAAAAGATATGGGACCAAAAGCAGCCCAAGAGTCCAGACCTTTGAACTCCAGAAAAATCTGCAAAAACAGGAGGATGAAAACGAAGAATTGGTTTATAGTTCGGTAGCAAATTAAAAATCATAAAGAACACTAAAAATCCAAACATAATCAGAATATTGTTTTTACAAATAAACCCACCAAACAGAAAATGCACTAAATTCATTTCATTCCATTTATCTGGAAAAGAGCATAGACAATTCAAGCAGCTTCAATTACATGTACAGAATTTCCCAATCTTACGTTGTTGGCAATAATATCCAACTGGAAAACGACCGCTAGACTTGAAAATGATTTTCAACCTTCCTCCACCTCTATGGGATGCAACATTTATCAACACCTGAAACCACATTGACTATAAATGTATTTACCTACCATTGCAACACAACACATGAAGATAAAAATGTATCCACTTGTCACAATCGCACTTTTCTTCTCTTCTCGGCAGTAAGTGAGTCAAGCCAATTTGTGTTCACGTCACCTATGGCCGGACAACGTATTGCTCAAGCCTTTGACCCCGATTTGAAAAGAAGGTTTTAGAAAACAAAGACAAAGAGATTTTAAAAGGGAGTTTGAAAGCGATGTTATATGGCATACAAGCAAAAGGCAACACAACGTCGGGAAGATAAATCCACTCATGACAAGGGACAATGCTCTTAAATTTTCAAAATGCCAGACCCAAAGATTCAGCAATTGAAAATTTGATCTATAAGAGTAAAAAATATGTACCTTCGTACGTATAAGATCAAATGCCACAGTTCATTTAAAGTTTCAGAAGGTGTTGAGTTTACTTGCCAAAACATGTGAACCTTCAAAATGGGCCGTGGATCATGTGAGGTGAATCAGATGTACCTCTTCCTACATTAAAAACTAACCTTTGTTCCATTTTTACACCATAAAATGCCCACTGCATACTAAACCATCTGTCACCAACATTTCCAACAAACTTTGCAGTCTATTTCTCCTCCTTTAGCATCTCTACCACTTCTTATATCCTTTTGGCTTTTGCATTATCAAACAGCAATGAAGAAATTCCCACTTGTGGCTCAAACTTCTCTACTTTTCTGGATTTTCTTCATCATACTAATGATTGGAAGACGTCTTGATGCATCGACTCACTGGGATCACAGTAAGAAAAATCATCATCTATGTGGTTTTTGTCAACTTATTTTGCTATTCTAGTTGCTAGGAAAATGCACTCATATCCCTAAGCCTTTTAAGTGTATGATATTTCAGTGAGCTTTAATGCAGAAGATACTCACAGACCAGTAGGCAGCTCAACGCACCACGAGGTACTGTGTTTTCTTCGTCTCCTCGCCACTTCGTATCGAACATTTTGTGAGAAAATAAATATATCTGAGACAAGAATAGGAAAAACATGAATAATAGAGGCTCAACGAACAAGACGAACCATGACAACATGCTAACAGGAAAGAACTTTAATTCAGTTTCCTTGTCATGTATGCCTGTGCAGGAAAAAACTGAAGCACTAGGTATGGAGTTATACCCGACAGGATCCAGCCTCCCAGACTGTTCCCATGCATGTGGACCATGTTTTCCGTGCAAAAGGGTGATGGTGAGCTTCAAATGCTCTGCTGCAGAGTCCTGTCCCACTGTCTACAGGTGCATGTGTAAAGGGAAATATTATCACGTACCTTCCAATTGAGCATAAATTCAATCTGGAGGAGAATGCAGCAAAGAACAAAGCAATTAATGATTTGGTTAGCACTTGCACTGATGTGGTGACTATAAGGATACATTGAAGACTGAGACTATAATCTCTGTTGATTTCATTTGGGTTCATCTCCTTGTACTCGGATCATTCCGTATAAGAAAATAACTCAGAAAACAAATTTTTTCAAGCATCGGGAAGTTCAATTAGGAAGTGAGAAGTCGGTTTTTTACTAGTTTGTTCATGTCCAATATCATTTCCTTTGTTCTAGTTCTACTTGAAATGAGATCTGGTCTATCCTGCTCCCTA ATGCCATGCCCTAAAGAAGCAATGAAGAAATTCCCACTTGTGGCTCAAACTTCTCTACTTTTCTGGATTTTCTTCATCATACTAATGATTGGAAGACGTCTTGATGCATCGACTCACTGGGATCACATGAGCTTTAATGCAGAAGATACTCACAGACCAGTAGGCAGCTCAACGCACCACGAGGAAAAAACTGAAGCACTAGGTATGGAGTTATACCCGACAGGATCCAGCCTCCCAGACTGTTCCCATGCATGTGGACCATGTTTTCCGTGCAAAAGGGTGATGGTGAGCTTCAAATGCTCTGCTGCAGAGTCCTGTCCCACTGTCTACAGGTGCATGTGTAAAGGGAAATATTATCACGTACCTTCCAATTGAGCATAAATTCAATCTGGAGGAGAATGCAGCAAAGAACAAAGCAATTAATGATTTGGTTAGCACTTGCACTGATGTGGTGACTATAAGGATACATTGAAGACTGAGACTATAATCTCTGTTGATTTCATTTGGGTTCATCTCCTTGTACTCGGATCATTCCGTATAAGAAAATAACTCAGAAAACAAATTTTTTCAAGCATCGGGAAGTTCAATTAGGAAGTGAGAAGTCGGTTTTTTACTAGTTTGTTCATGTCCAATATCATTTCCTTTGTTCTAGTTCTACTTGAAATGAGATCTGGTCTATCCTGCTCCCTA ATGCCATGCCCTAAAGAAGCAATGAAGAAATTCCCACTTGTGGCTCAAACTTCTCTACTTTTCTGGATTTTCTTCATCATACTAATGATTGGAAGACGTCTTGATGCATCGACTCACTGGGATCACATGAGCTTTAATGCAGAAGATACTCACAGACCAGTAGGCAGCTCAACGCACCACGAGGAAAAAACTGAAGCACTAGGTATGGAGTTATACCCGACAGGATCCAGCCTCCCAGACTGTTCCCATGCATGTGGACCATGTTTTCCGTGCAAAAGGGTGATGGTGAGCTTCAAATGCTCTGCTGCAGAGTCCTGTCCCACTGTCTACAGGTGCATGTGTAAAGGGAAATATTATCACGTACCTTCCAATTGA
BLAST of CmoCh15G005580 vs. Swiss-Prot
Match: EPF2_ARATH (Protein EPIDERMAL PATTERNING FACTOR 2 OS=Arabidopsis thaliana GN=EPF2 PE=1 SV=1) HSP 1 Score: 109.0 bits (271), Expect = 3.8e-23 Identity = 46/71 (64.79%), Postives = 57/71 (80.28%), Query Frame = 1
BLAST of CmoCh15G005580 vs. Swiss-Prot
Match: EPFL7_ARATH (EPIDERMAL PATTERNING FACTOR-like protein 7 OS=Arabidopsis thaliana GN=EPFL7 PE=1 SV=1) HSP 1 Score: 91.3 bits (225), Expect = 8.1e-18 Identity = 36/50 (72.00%), Postives = 45/50 (90.00%), Query Frame = 1
BLAST of CmoCh15G005580 vs. Swiss-Prot
Match: EPF1_ARATH (Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana GN=EPF1 PE=1 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 3.5e-13 Identity = 49/124 (39.52%), Postives = 60/124 (48.39%), Query Frame = 1
BLAST of CmoCh15G005580 vs. TrEMBL
Match: A0A0A0KB66_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052050 PE=4 SV=1) HSP 1 Score: 201.4 bits (511), Expect = 6.2e-49 Identity = 98/118 (83.05%), Postives = 101/118 (85.59%), Query Frame = 1
BLAST of CmoCh15G005580 vs. TrEMBL
Match: B9MW47_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s12090g PE=4 SV=1) HSP 1 Score: 138.7 bits (348), Expect = 4.9e-30 Identity = 71/117 (60.68%), Postives = 80/117 (68.38%), Query Frame = 1
BLAST of CmoCh15G005580 vs. TrEMBL
Match: A0A061FK47_THECC (Membrane lipoprotein OS=Theobroma cacao GN=TCM_036636 PE=4 SV=1) HSP 1 Score: 135.6 bits (340), Expect = 4.2e-29 Identity = 68/118 (57.63%), Postives = 76/118 (64.41%), Query Frame = 1
BLAST of CmoCh15G005580 vs. TrEMBL
Match: M1CMS7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400027541 PE=4 SV=1) HSP 1 Score: 131.7 bits (330), Expect = 6.1e-28 Identity = 59/87 (67.82%), Postives = 69/87 (79.31%), Query Frame = 1
BLAST of CmoCh15G005580 vs. TrEMBL
Match: A0A0D2TTL6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G287400 PE=4 SV=1) HSP 1 Score: 131.3 bits (329), Expect = 7.9e-28 Identity = 60/70 (85.71%), Postives = 60/70 (85.71%), Query Frame = 1
BLAST of CmoCh15G005580 vs. TAIR10
Match: AT1G34245.1 (AT1G34245.1 Putative membrane lipoprotein) HSP 1 Score: 109.0 bits (271), Expect = 2.1e-24 Identity = 46/71 (64.79%), Postives = 57/71 (80.28%), Query Frame = 1
BLAST of CmoCh15G005580 vs. TAIR10
Match: AT1G71866.1 (AT1G71866.1 LOCATED IN: endomembrane system) HSP 1 Score: 91.3 bits (225), Expect = 4.6e-19 Identity = 36/50 (72.00%), Postives = 45/50 (90.00%), Query Frame = 1
BLAST of CmoCh15G005580 vs. TAIR10
Match: AT2G20875.1 (AT2G20875.1 epidermal patterning factor 1) HSP 1 Score: 75.9 bits (185), Expect = 2.0e-14 Identity = 49/124 (39.52%), Postives = 60/124 (48.39%), Query Frame = 1
BLAST of CmoCh15G005580 vs. NCBI nr
Match: gi|659113630|ref|XP_008456675.1| (PREDICTED: protein EPIDERMAL PATTERNING FACTOR 1-like [Cucumis melo]) HSP 1 Score: 206.5 bits (524), Expect = 2.8e-50 Identity = 100/118 (84.75%), Postives = 105/118 (88.98%), Query Frame = 1
BLAST of CmoCh15G005580 vs. NCBI nr
Match: gi|449446343|ref|XP_004140931.1| (PREDICTED: protein EPIDERMAL PATTERNING FACTOR 2 [Cucumis sativus]) HSP 1 Score: 201.4 bits (511), Expect = 8.9e-49 Identity = 98/118 (83.05%), Postives = 101/118 (85.59%), Query Frame = 1
BLAST of CmoCh15G005580 vs. NCBI nr
Match: gi|566200833|ref|XP_006376332.1| (hypothetical protein POPTR_0013s12090g [Populus trichocarpa]) HSP 1 Score: 138.7 bits (348), Expect = 7.1e-30 Identity = 71/117 (60.68%), Postives = 80/117 (68.38%), Query Frame = 1
BLAST of CmoCh15G005580 vs. NCBI nr
Match: gi|731430477|ref|XP_010665052.1| (PREDICTED: protein EPIDERMAL PATTERNING FACTOR 2 isoform X1 [Vitis vinifera]) HSP 1 Score: 135.6 bits (340), Expect = 6.0e-29 Identity = 68/114 (59.65%), Postives = 80/114 (70.18%), Query Frame = 1
BLAST of CmoCh15G005580 vs. NCBI nr
Match: gi|590604351|ref|XP_007020231.1| (Membrane lipoprotein [Theobroma cacao]) HSP 1 Score: 135.6 bits (340), Expect = 6.0e-29 Identity = 68/118 (57.63%), Postives = 76/118 (64.41%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
|