CmoCh14G004160 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G004160
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	WRC protein
Location	Cmo_Chr14 : 1976921 .. 1979030 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTCTTCCACCCTGGCATCGCTCTCCCTCTCCGTACTCCCAGTCCCCACCTGCCTCTCCGATTCCTACCGGCTACCTGCTCTTCCGGTTGCCCTCCCCACCCCGGTGCAACTCATTAAGGCCTTACCCACACAAATTCCATTACCAAAAAATCAAAGATAAGACCATACACACACACACACTACACTTTTCCCTTCTTCTTCTTCCTCCTTTTTCTGCACAAATAATCCGACAATTTGGGTTGTCCGCCGGCGACATGAGGATCAGAAAACGGCAGGTCCCATTACCCTTCTCCTCTCTCTCTCCTCTCCCTCTCTCAGATCCCCTCCTCCGCCGCACTCCGCCGGTGCAACTCCATCTCCAACTCCCCTCCTCCGATCCTCCAAATCTACACCCCTACGCCTGCGATTCCGCCGCCTACCACACTAATAATGCCTTGGTCAGTAATCAAATACCCCCCTCCCTCTTTTTTCTTCACTCGATTTGGGATTTTTCTGTTTTCTTTTGGGCGGCGCGTTCTATTGAAGAATGGTCCCTGAAATCGCTCATGGGGTTGTCGGATTTTTCGTGTGCAGGGGAAGAAGGATCAGCTAGAACAACACGATTCCAGGTAACGATTCAAAGCCCCCATTTCTGTTCTTCCTCCAAATAAAAAAACCCAAAATACCGCTTAATCCATTTACTTTTATGTTTAGGAGAGTAAAAAAGGACAGCGGAAATCACTGTTCTGATGTTTTTTTTTTTTTTAATATGATTTCGTTGGCTTTTGCCTGTGAAAACATCTGGGGCTCTGCATGTTCTTCGCTGTTCCACAGCTCCTGTCTTCTTCTGAAATCATGGCTTACAGTAATTACACATTTTCTTGTGGGTTTCCTTCTTTTAATGTTACCCATGTGAATTTCATAGCTATGTGTATCTCTGAATTATTTTAGGGAAACGACTGTGTTTGGTGCAGAAGCAAGCAATGGTGTTCTTCCACTGTCCTCCTCTTCTCCTCAAGGTTCACCCCTTTTGTTTTTTTCATATCACTTTCTGGGCTGCTTGGTTTTCCTTTGCTGTACTGTAATGATTTGATTATGTTTGTGTGAATAAATGTGCACCATGATCATGAGTTTTCACTAGTGATTTGATGGGAAGTCCAATCTTCAAATTATGTGAAAATTATATGAAATAATTAGTGTTTTATCTACTAAAAATTACGATATGATACTCAATTTGTGTAATGTTGTGGTCGGTTTTTGTTTTCGAGTTTCGATTCAGCTTAGATTTTGTTTATTTATGTTTGATTGTAGTGGGTGATGGGCAATGGTGCGAGAGGGATAAGGATTTTCCATTAAAGAAGAGAAGAGGGAGCTTTGAGAGGCAAAGTGACGATGATCAGAACAATGCCGATGATCAAACCACCACCGCCGCCGCCGCCGCCGCCATGGAGTCACTGCCAGATCATAAGAAGACAACGAAGAACAAGAAACAACCCAAACTGGGTTTGAATCTCGCCGGAAAAAAGAGGTCGAGAGGCGGCGCGTTAATGGAGGGATCCCGGTGCAGCCGCGTCAATGGAAGAGGATGGCGATGTTGCCAACAAACTCTCGTCGGTTATTCTCTCTGTGAACATCACTTGGGAAAAGGCCGTCTCCGCAGCATGAACAACGTACGCAGCCGCTCTTTGGCCGCCGCCGCCGCCACACTGAAAAACATTGTCACCGTCGATAAAGACGAGAAAAAGCCACCTCCATGCCCACCACCGCCGTCGCCATCATTGACGTTAGCCAGCAAGAAGAGAACGAAACTGGGTTTGGTGAAAGCTCGGTCAATAAGCAGCTTACTCGGCCAACCAGACGGCATGGCGGCAATACCGCCGCCTCCGCCCCCGTCTCAGTCAACATTGCCTAACGACAACATTAACCAGTAGAAAACTATAATTTATTACAAAGTGACCCCTCATCTTTTAAGTAATTTAAAATTTTCAATTAGGCTGTTTTGTAAAAAGAAAAAAAAAAAAAAACAATATTTATTGTCTTATTAATATATTTGAACATTATTAAAATTCATCTATTTCATAAATTAAATTTATTTCACGACTTCAAATAAATATATACTAAAAAATAAA

mRNA sequence

CTCTCTTCCACCCTGGCATCGCTCTCCCTCTCCGTACTCCCAGTCCCCACCTGCCTCTCCGATTCCTACCGGCTACCTGCTCTTCCGGTTGCCCTCCCCACCCCGGTGCAACTCATTAAGGCCTTACCCACACAAATTCCATTACCAAAAAATCAAAGATAAGACCATACACACACACACACTACACTTTTCCCTTCTTCTTCTTCCTCCTTTTTCTGCACAAATAATCCGACAATTTGGGTTGTCCGCCGGCGACATGAGGATCAGAAAACGGCAGGTCCCATTACCCTTCTCCTCTCTCTCTCCTCTCCCTCTCTCAGATCCCCTCCTCCGCCGCACTCCGCCGGTGCAACTCCATCTCCAACTCCCCTCCTCCGATCCTCCAAATCTACACCCCTACGCCTGCGATTCCGCCGCCTACCACACTAATAATGCCTTGGGGAAGAAGGATCAGCTAGAACAACACGATTCCAGGGAAACGACTGTGTTTGGTGCAGAAGCAAGCAATGGTGTTCTTCCACTGTCCTCCTCTTCTCCTCAAGTGGGTGATGGGCAATGGTGCGAGAGGGATAAGGATTTTCCATTAAAGAAGAGAAGAGGGAGCTTTGAGAGGCAAAGTGACGATGATCAGAACAATGCCGATGATCAAACCACCACCGCCGCCGCCGCCGCCGCCATGGAGTCACTGCCAGATCATAAGAAGACAACGAAGAACAAGAAACAACCCAAACTGGGTTTGAATCTCGCCGGAAAAAAGAGGTCGAGAGGCGGCGCGTTAATGGAGGGATCCCGGTGCAGCCGCGTCAATGGAAGAGGATGGCGATGTTGCCAACAAACTCTCGTCGGTTATTCTCTCTGTGAACATCACTTGGGAAAAGGCCGTCTCCGCAGCATGAACAACGTACGCAGCCGCTCTTTGGCCGCCGCCGCCGCCACACTGAAAAACATTGTCACCGTCGATAAAGACGAGAAAAAGCCACCTCCATGCCCACCACCGCCGTCGCCATCATTGACGTTAGCCAGCAAGAAGAGAACGAAACTGGGTTTGGTGAAAGCTCGGTCAATAAGCAGCTTACTCGGCCAACCAGACGGCATGGCGGCAATACCGCCGCCTCCGCCCCCGTCTCAGTCAACATTGCCTAACGACAACATTAACCAGTAGAAAACTATAATTTATTACAAAGTGACCCCTCATCTTTTAAGTAATTTAAAATTTTCAATTAGGCTGTTTTGTAAAAAGAAAAAAAAAAAAAAACAATATTTATTGTCTTATTAATATATTTGAACATTATTAAAATTCATCTATTTCATAAATTAAATTTATTTCACGACTTCAAATAAATATATACTAAAAAATAAA

Coding sequence (CDS)

ATGAGGATCAGAAAACGGCAGGTCCCATTACCCTTCTCCTCTCTCTCTCCTCTCCCTCTCTCAGATCCCCTCCTCCGCCGCACTCCGCCGGTGCAACTCCATCTCCAACTCCCCTCCTCCGATCCTCCAAATCTACACCCCTACGCCTGCGATTCCGCCGCCTACCACACTAATAATGCCTTGGGGAAGAAGGATCAGCTAGAACAACACGATTCCAGGGAAACGACTGTGTTTGGTGCAGAAGCAAGCAATGGTGTTCTTCCACTGTCCTCCTCTTCTCCTCAAGTGGGTGATGGGCAATGGTGCGAGAGGGATAAGGATTTTCCATTAAAGAAGAGAAGAGGGAGCTTTGAGAGGCAAAGTGACGATGATCAGAACAATGCCGATGATCAAACCACCACCGCCGCCGCCGCCGCCGCCATGGAGTCACTGCCAGATCATAAGAAGACAACGAAGAACAAGAAACAACCCAAACTGGGTTTGAATCTCGCCGGAAAAAAGAGGTCGAGAGGCGGCGCGTTAATGGAGGGATCCCGGTGCAGCCGCGTCAATGGAAGAGGATGGCGATGTTGCCAACAAACTCTCGTCGGTTATTCTCTCTGTGAACATCACTTGGGAAAAGGCCGTCTCCGCAGCATGAACAACGTACGCAGCCGCTCTTTGGCCGCCGCCGCCGCCACACTGAAAAACATTGTCACCGTCGATAAAGACGAGAAAAAGCCACCTCCATGCCCACCACCGCCGTCGCCATCATTGACGTTAGCCAGCAAGAAGAGAACGAAACTGGGTTTGGTGAAAGCTCGGTCAATAAGCAGCTTACTCGGCCAACCAGACGGCATGGCGGCAATACCGCCGCCTCCGCCCCCGTCTCAGTCAACATTGCCTAACGACAACATTAACCAGTAG

Homology

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BLAST of CmoCh14G004160 vs. TrEMBL
Match: A0A0A0LGX5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G806230 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 9.4e-75
Identity = 188/317 (59.31%), Postives = 219/317 (69.09%), Query Frame = 1


Query: 1   MRIRKRQVPLP-FSSLSPLPLSDPLLRRTPPVQLHLQLPSSDPPNLHPYACDSAAYHTNN 60
           MRIRKRQ+PLP FSSLS            PPVQL   LPSSDPP ++P          NN
Sbjct: 1   MRIRKRQLPLPTFSSLSD-----------PPVQL--PLPSSDPP-INPL--------DNN 60

Query: 61  ALGKKDQLEQHDSRETTVFGAEA-SNGVLPLSSSSPQVGDGQWCERDKDFPLKKRRGSFE 120
              K+  L+Q+DSRET + GAE  +N +LP SSSS   G G+WCE++K FPLKKRRGSFE
Sbjct: 61  Q--KQKLLQQYDSRETILIGAETINNALLPHSSSSSSQGGGRWCEKEKAFPLKKRRGSFE 120

Query: 121 RQSDDDQNN----ADDQTTTAAA-AAAMESLPDHKKTTKNKKQPKLGLN-LAGKKRSRGG 180
           R SD+D ++    +D Q  T       M     +KK T ++KQ K+GL+ + GKKRSRGG
Sbjct: 121 RSSDEDNDDHSKDSDHQVATKLQDEKKMMKTKMNKKCTLSQKQSKVGLDAVVGKKRSRGG 180

Query: 181 ALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRSRSLAAAAATLKNIV 240
           ALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVR+RSL   AAT KNIV
Sbjct: 181 ALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRNRSL--VAATPKNIV 240

Query: 241 TVDKDEKKPPPCP--------PPPSPSLTLASKKRTKLGLVKARSISSLLGQPDGMAAIP 300
            V+KDEKKP P P        PPP  S +L SKKR KLG+VKARS+SSLLGQP+ MA   
Sbjct: 241 VVEKDEKKPSPSPPPSPFPSSPPPPSSFSLTSKKRMKLGVVKARSMSSLLGQPEAMAVAT 289

Query: 301 PPPPPSQSTLPNDNINQ 302
           P  PP  STL +DNI++
Sbjct: 301 PLSPP--STLHDDNIDK 289

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BLAST of CmoCh14G004160 vs. TrEMBL
Match: A0A067JP86_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25554 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 8.0e-50
Identity = 143/310 (46.13%), Postives = 183/310 (59.03%), Query Frame = 1


Query: 1   MRIRKRQVPLPFSSLSPLPLSDPLLRRTPPVQLHLQ-------LPSSDPPNL----HPYA 60
           MRIRKR+VP P SSLSP+PLSDP LRR+P VQL L+        PSS  P +    +PY 
Sbjct: 1   MRIRKRKVPFPLSSLSPVPLSDPNLRRSPVVQLQLEDDTAAYFNPSSSNPPIGDGNNPYQ 60

Query: 61  CD--SAAYHTNNALGKKDQLEQHDSRETTVFGAEASNG-VLPLSSSSPQVGDGQWCERDK 120
            +    A  +    G +D    + +R  ++F AE     V   S+SS Q  DG+WCE +K
Sbjct: 61  EEVKKEAKDSPKDEGGRDGETSNYTRRGSLFNAETETEMVFQESNSSHQ--DGRWCEGEK 120

Query: 121 DFPLKKRRGSFERQSDDDQNNADDQTTTAAAAAAMESLPDHKKTTKN---KKQPKLGLNL 180
            FPLKKRRG+ ER   +++       T       ++   D+    +    +K+ K     
Sbjct: 121 AFPLKKRRGNLERSKQEEETKEKKMKTKMNKKCQLQHNSDNNNNNQEIEEEKEIKESNTS 180

Query: 181 AGKKRSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRSRSLAA 240
             KK+ RGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSM +VR+RS+A+
Sbjct: 181 TSKKKVRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMTSVRNRSMAS 240

Query: 241 AAATL-----------------KNIVTVDKDEKKPPPCPPPPSPSLTLASKKRTKLGLVK 277
           +AA                   K++V +D ++K      P     LT+ SKK+ KLG+VK
Sbjct: 241 SAAKKASSCALSPLPPQEDKERKDMVELDGEDKGNDDKKP-----LTI-SKKKMKLGVVK 300

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BLAST of CmoCh14G004160 vs. TrEMBL
Match: A0A061EXI8_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_024932 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.4e-49
Identity = 160/372 (43.01%), Postives = 191/372 (51.34%), Query Frame = 1


Query: 1   MRIRKRQVPLPFSSLSPLPL-SDPLLRRTPPVQLHLQL-------------PSSDPPN-- 60
           MRIRKRQVPLPFSS+SP+PL SDP   R P VQL LQ              PSSD PN  
Sbjct: 1   MRIRKRQVPLPFSSISPVPLPSDPNFNRPPVVQLPLQQQQPPLPTPRFDLRPSSDRPNHP 60

Query: 61  ---LHPYACDSAAY----------HTNNALGKKDQ----LEQ----------------HD 120
              L     DS+A+          + NN   KK +    L+Q                +D
Sbjct: 61  IGQLQTQGRDSSAFPAGTTTHGEDNNNNKKPKKKEDYLVLKQGGGGEEEERGGEGEKSND 120

Query: 121 SRETTVFGAEASNGVLPLSSSSPQVGDGQWCERDKDFPLKKRRGSFERQS--DDDQ---- 180
           +RE +V GAE  +G  P SSSS Q   G+W E +K FPLKKRRGSFER+   DDD     
Sbjct: 121 TREKSVLGAELGSGFPPQSSSSHQAL-GRWGEGEKAFPLKKRRGSFERRGNYDDDTIMEK 180

Query: 181 ------NNADDQTTTAAAAAAMESLPDHKKTTKNKKQPKLGLNL---AGKKRSRGGALME 240
                  N +   T        +   +H++  K  K     ++    + KKR RGGALME
Sbjct: 181 DNNKKVTNINKMKTKMNKKFVQQQNDNHEQEEKEIKDSTASVDSNPSSAKKRGRGGALME 240

Query: 241 GSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRSRSLAAAAATLKNIVTVDK 284
           GSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSM +VRSRSLA + A  K     + 
Sbjct: 241 GSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMTSVRSRSLAGSNAAKKEEQQPNN 300

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BLAST of CmoCh14G004160 vs. TrEMBL
Match: A0A0D2QCR9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G156300 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.2e-47
Identity = 144/319 (45.14%), Postives = 166/319 (52.04%), Query Frame = 1


Query: 1   MRIRKRQVPLPFSSLSPLPL-SDPLLRRTPPVQLHLQLPSSDPPNLHP----------YA 60
           MRIRKRQ  LPFSS+SP PL SDP   R+P VQ H  L    PP  HP            
Sbjct: 1   MRIRKRQAQLPFSSISPPPLSSDPNFNRSPVVQ-HPPLRKPPPPADHPNHPIRRQKPTQG 60

Query: 61  CDSAAY------HTNNALGKKD-----------------QLEQHDSRETTVFGAEASNGV 120
            DS+A+      H    L KK+                 +   + +R+   F  E   G 
Sbjct: 61  RDSSAFPETTTSHGGEELKKKEDYLVLKQEGEEERGENGEKSNYTARKKNDFDEELGTGS 120

Query: 121 LPLSSSSPQVGDGQWCERDKDFPLKKRRGSFER--QSDDDQNNADDQTTTAAAAAAMESL 180
           L L       G G+WCE +K FPLKKRRGSFER  Q  DD  N                 
Sbjct: 121 LSLQ------GVGKWCEGEKAFPLKKRRGSFERIMQKKDDIIN----------------- 180

Query: 181 PDHKKTTKNKKQPKLGLNLAGKKRSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHH 240
            DH                +GKK+ R GALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHH
Sbjct: 181 -DHNYN-------------SGKKKGRNGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHH 240

Query: 241 LGKGRLRSMNNVRSRSLAAAAATLKNIVTVDKDEKKPPPCPPPPSPSLTLASKKRTKLGL 284
           LGKGRLRS+ +VRSRSL +      N     K E++PP       P +T   KKR KLG+
Sbjct: 241 LGKGRLRSITSVRSRSLGS-----NNNNNAGKKEEQPPLSKQEEKPLMTTTIKKRVKLGM 276

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BLAST of CmoCh14G004160 vs. TrEMBL
Match: A0A067FU33_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g019760mg PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.8e-47
Identity = 145/332 (43.67%), Postives = 182/332 (54.82%), Query Frame = 1


Query: 1   MRIRKRQVPLPFSSLSPLPLS-DPLLRRTPPVQLHLQLPSSDP----PNLHPYACDSAAY 60
           MRIRKRQVPLP SSLSP+P+S DP    +P VQLH   P  DP    P      C   + 
Sbjct: 1   MRIRKRQVPLPLSSLSPIPISSDPHYNGSPVVQLH---PGHDPHQNLPQQADAVCSQPSD 60

Query: 61  HTNNALGKKDQLEQ----------------HDSRETTVFGAE-ASNGVLPLSSSSPQVGD 120
           H+N  +G  + L+Q                 DSR+ ++ GAE A+ GVL   SSS  V  
Sbjct: 61  HSNQPIGSGNTLDQMDKDCLVLEDENGEKSDDSRKNSILGAEIAAAGVLSQLSSSHHVV- 120

Query: 121 GQWCERDKDFPLKKRRGSFERQSDDDQ--------NN----ADDQTTTAAAAAAMESLPD 180
           G+W E +K FPLKKR  S  R++D+D         NN     +DQ          E    
Sbjct: 121 GRWREGEKAFPLKKR--SSRRENDEDNFKKMKTKLNNKKFAGNDQQEQGEQEEEEEQEEQ 180

Query: 181 HKKTTKNKKQPKLGLNLAGKKRSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLG 240
            ++    +       +   K+ ++GGA+MEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLG
Sbjct: 181 EEREVTKESVDNNSTSSKNKRGTKGGAIMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLG 240

Query: 241 KGRLRSMNNVRSRS--LAAAAATLKNIVTVDKDEKKPPPCPPPPSPS------------- 279
           KGRLRSMN+VRSRS  L ++A++ K+  T      KP     P S +             
Sbjct: 241 KGRLRSMNSVRSRSSNLGSSASSNKSTATTAAATNKPAISSSPSSTTLQESKMKQELVSD 300

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BLAST of CmoCh14G004160 vs. TAIR10
Match: AT2G42040.1 (AT2G42040.1 WRC (InterPro:IPR014977))

HSP 1 Score: 131.0 bits (328), Expect = 1.3e-30
Identity = 109/294 (37.07%), Postives = 139/294 (47.28%), Query Frame = 1


Query: 1   MRIRKRQVPLPFSSLSPLPLSDPLLRRTPPVQLH---------------LQLPSSDPPNL 60
           MRIRKRQVPLP SSL P+PLSD    R+P                    LQL    P  +
Sbjct: 1   MRIRKRQVPLPLSSLLPVPLSDLYFNRSPTATARYFRGGYKDGGDDFGSLQLSLPPPSQI 60

Query: 61  HPYACDSAAYHTNNALGKKDQLE--QHDSRETTVFGAEASNGVLPLSSSSPQVGDGQWCE 120
                 S      + + KK++++    D+ +  V     ++G   ++     V   Q  E
Sbjct: 61  ------SDRLIQRDLIKKKEEVKALDDDNGDVDVKSRTDASGSKNVNPRGESVSSIQVVE 120

Query: 121 R-DKDFPLKKRRGSFERQSDDDQNNADDQTTTAAAAAAMESLPDHKKTTKNKKQPKLGLN 180
           + +K   L+KRRG    +  +D+   +D+  +              +  K KK       
Sbjct: 121 KNEKVVSLRKRRGFINFEDYEDE---EDEEASGGGG----------RINKGKK------- 180

Query: 181 LAGKKRSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRSRSLA 240
              K +  GG L EGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGR+RSMN    +S  
Sbjct: 181 ---KAKKSGGGLEEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRVRSMN----KSGG 240

Query: 241 AAAATLKNIVTVDKDEKKPPPCPPPPSPSLTLASKKRTKLGLVKARSISSLLGQ 277
                 K +V   K                    KKR KLG+VKARSISSLLGQ
Sbjct: 241 GRGGEKKAVVVEVK--------------------KKRVKLGMVKARSISSLLGQ 241

[Close]

BLAST of CmoCh14G004160 vs. NCBI nr
Match: gi|659084724|ref|XP_008443038.1| (PREDICTED: uncharacterized protein LOC103486754 isoform X2 [Cucumis melo])

HSP 1 Score: 294.3 bits (752), Expect = 2.5e-76
Identity = 191/314 (60.83%), Postives = 222/314 (70.70%), Query Frame = 1


Query: 1   MRIRKRQVPLP-FSSLSPLPLSDPLLRRTPPVQLHL--QLPSSDPPNLHPYACDSAAYHT 60
           MRIRKRQ+PLP FSSLS            PPVQLHL     SSDPP ++P          
Sbjct: 1   MRIRKRQLPLPAFSSLSD-----------PPVQLHLPSSSSSSDPP-INPL--------- 60

Query: 61  NNALGKKDQLEQHDSRETTVFGAEA-SNGVLPLSSSSPQVGDGQWCERDKDFPLKKRRGS 120
           +N   K+  L+Q+DSRET + GAE  +N +LP SSSS QVG G+WCE++K FPLKKRRGS
Sbjct: 61  DNNNQKQKLLQQYDSRETILIGAETINNALLPHSSSSSQVGGGRWCEKEKAFPLKKRRGS 120

Query: 121 FERQSDDDQN--NADDQTTTAAA-AAAMESLPDHKKTTKNKKQPKLGLNLA-GKKRSRGG 180
           FER SD+D +  N D Q  T       M     +KK T ++KQ K+GL++  GKKRSRGG
Sbjct: 121 FERSSDEDNDDHNKDIQVATKLQDEKKMIKTKMNKKCTLSQKQSKVGLDIVVGKKRSRGG 180

Query: 181 ALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRSRSLAAAAATLKNIV 240
           ALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVR+RSL  AAAT KNIV
Sbjct: 181 ALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRNRSL--AAATPKNIV 240

Query: 241 TVDKDEKKP-----PPCPPPPSPSLTLASKKRTKLGLVKARSISSLLGQPDGMAAIPPPP 300
            ++KDEKKP     P  PPPPS S +L +KKR KLG+VKARSISSLLGQPDG+ A P   
Sbjct: 241 VIEKDEKKPSPSQFPSSPPPPS-SFSLTNKKRMKLGVVKARSISSLLGQPDGIVATPLSL 287

Query: 301 PPSQSTLPNDNINQ 302
           P   STL +DNI++
Sbjct: 301 P---STLHDDNIDK 287

[Close]

BLAST of CmoCh14G004160 vs. NCBI nr
Match: gi|449437904|ref|XP_004136730.1| (PREDICTED: uncharacterized protein LOC101223014 isoform X1 [Cucumis sativus])

HSP 1 Score: 288.5 bits (737), Expect = 1.3e-74
Identity = 190/318 (59.75%), Postives = 221/318 (69.50%), Query Frame = 1


Query: 1   MRIRKRQVPLP-FSSLSPLPLSDPLLRRTPPVQLHLQLPSSDPPNLHPYACDSAAYHTNN 60
           MRIRKRQ+PLP FSSLS            PPVQL   LPSSDPP ++P          NN
Sbjct: 1   MRIRKRQLPLPTFSSLSD-----------PPVQL--PLPSSDPP-INPL--------DNN 60

Query: 61  ALGKKDQLEQHDSRETTVFGAEA-SNGVLP-LSSSSPQVGDGQWCERDKDFPLKKRRGSF 120
              K+  L+Q+DSRET + GAE  +N +LP  SSSS QVG G+WCE++K FPLKKRRGSF
Sbjct: 61  Q--KQKLLQQYDSRETILIGAETINNALLPHSSSSSSQVGGGRWCEKEKAFPLKKRRGSF 120

Query: 121 ERQSDDDQNN----ADDQTTTAAA-AAAMESLPDHKKTTKNKKQPKLGLN-LAGKKRSRG 180
           ER SD+D ++    +D Q  T       M     +KK T ++KQ K+GL+ + GKKRSRG
Sbjct: 121 ERSSDEDNDDHSKDSDHQVATKLQDEKKMMKTKMNKKCTLSQKQSKVGLDAVVGKKRSRG 180

Query: 181 GALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRSRSLAAAAATLKNI 240
           GALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVR+RSL   AAT KNI
Sbjct: 181 GALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRNRSL--VAATPKNI 240

Query: 241 VTVDKDEKKPPPCP--------PPPSPSLTLASKKRTKLGLVKARSISSLLGQPDGMAAI 300
           V V+KDEKKP P P        PPP  S +L SKKR KLG+VKARS+SSLLGQP+ MA  
Sbjct: 241 VVVEKDEKKPSPSPPPSPFPSSPPPPSSFSLTSKKRMKLGVVKARSMSSLLGQPEAMAVA 290

Query: 301 PPPPPPSQSTLPNDNINQ 302
            P  PP  STL +DNI++
Sbjct: 301 TPLSPP--STLHDDNIDK 290

[Close]

BLAST of CmoCh14G004160 vs. NCBI nr
Match: gi|778684741|ref|XP_011652086.1| (PREDICTED: uncharacterized protein LOC101223014 isoform X2 [Cucumis sativus])

HSP 1 Score: 288.5 bits (737), Expect = 1.3e-74
Identity = 188/317 (59.31%), Postives = 219/317 (69.09%), Query Frame = 1


Query: 1   MRIRKRQVPLP-FSSLSPLPLSDPLLRRTPPVQLHLQLPSSDPPNLHPYACDSAAYHTNN 60
           MRIRKRQ+PLP FSSLS            PPVQL   LPSSDPP ++P          NN
Sbjct: 1   MRIRKRQLPLPTFSSLSD-----------PPVQL--PLPSSDPP-INPL--------DNN 60

Query: 61  ALGKKDQLEQHDSRETTVFGAEA-SNGVLPLSSSSPQVGDGQWCERDKDFPLKKRRGSFE 120
              K+  L+Q+DSRET + GAE  +N +LP SSSS   G G+WCE++K FPLKKRRGSFE
Sbjct: 61  Q--KQKLLQQYDSRETILIGAETINNALLPHSSSSSSQGGGRWCEKEKAFPLKKRRGSFE 120

Query: 121 RQSDDDQNN----ADDQTTTAAA-AAAMESLPDHKKTTKNKKQPKLGLN-LAGKKRSRGG 180
           R SD+D ++    +D Q  T       M     +KK T ++KQ K+GL+ + GKKRSRGG
Sbjct: 121 RSSDEDNDDHSKDSDHQVATKLQDEKKMMKTKMNKKCTLSQKQSKVGLDAVVGKKRSRGG 180

Query: 181 ALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRSRSLAAAAATLKNIV 240
           ALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVR+RSL   AAT KNIV
Sbjct: 181 ALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRNRSL--VAATPKNIV 240

Query: 241 TVDKDEKKPPPCP--------PPPSPSLTLASKKRTKLGLVKARSISSLLGQPDGMAAIP 300
            V+KDEKKP P P        PPP  S +L SKKR KLG+VKARS+SSLLGQP+ MA   
Sbjct: 241 VVEKDEKKPSPSPPPSPFPSSPPPPSSFSLTSKKRMKLGVVKARSMSSLLGQPEAMAVAT 289

Query: 301 PPPPPSQSTLPNDNINQ 302
           P  PP  STL +DNI++
Sbjct: 301 PLSPP--STLHDDNIDK 289

[Close]

BLAST of CmoCh14G004160 vs. NCBI nr
Match: gi|659084726|ref|XP_008443039.1| (PREDICTED: uncharacterized protein LOC103486754 isoform X3 [Cucumis melo])

HSP 1 Score: 287.7 bits (735), Expect = 2.3e-74
Identity = 190/314 (60.51%), Postives = 221/314 (70.38%), Query Frame = 1


Query: 1   MRIRKRQVPLP-FSSLSPLPLSDPLLRRTPPVQLHL--QLPSSDPPNLHPYACDSAAYHT 60
           MRIRKRQ+PLP FSSLS            PPVQLHL     SSDPP ++P          
Sbjct: 1   MRIRKRQLPLPAFSSLSD-----------PPVQLHLPSSSSSSDPP-INPL--------- 60

Query: 61  NNALGKKDQLEQHDSRETTVFGAEA-SNGVLPLSSSSPQVGDGQWCERDKDFPLKKRRGS 120
           +N   K+  L+Q+DSRET + GAE  +N +LP SSSS Q G G+WCE++K FPLKKRRGS
Sbjct: 61  DNNNQKQKLLQQYDSRETILIGAETINNALLPHSSSSSQ-GGGRWCEKEKAFPLKKRRGS 120

Query: 121 FERQSDDDQN--NADDQTTTAAA-AAAMESLPDHKKTTKNKKQPKLGLNLA-GKKRSRGG 180
           FER SD+D +  N D Q  T       M     +KK T ++KQ K+GL++  GKKRSRGG
Sbjct: 121 FERSSDEDNDDHNKDIQVATKLQDEKKMIKTKMNKKCTLSQKQSKVGLDIVVGKKRSRGG 180

Query: 181 ALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRSRSLAAAAATLKNIV 240
           ALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVR+RSL  AAAT KNIV
Sbjct: 181 ALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRNRSL--AAATPKNIV 240

Query: 241 TVDKDEKKP-----PPCPPPPSPSLTLASKKRTKLGLVKARSISSLLGQPDGMAAIPPPP 300
            ++KDEKKP     P  PPPPS S +L +KKR KLG+VKARSISSLLGQPDG+ A P   
Sbjct: 241 VIEKDEKKPSPSQFPSSPPPPS-SFSLTNKKRMKLGVVKARSISSLLGQPDGIVATPLSL 286

Query: 301 PPSQSTLPNDNINQ 302
           P   STL +DNI++
Sbjct: 301 P---STLHDDNIDK 286

[Close]

BLAST of CmoCh14G004160 vs. NCBI nr
Match: gi|659084722|ref|XP_008443037.1| (PREDICTED: uncharacterized protein LOC103486754 isoform X1 [Cucumis melo])

HSP 1 Score: 287.3 bits (734), Expect = 3.0e-74
Identity = 191/321 (59.50%), Postives = 222/321 (69.16%), Query Frame = 1


Query: 1   MRIRKRQVPLP-FSSLSPLPLSDPLLRRTPPVQLHL--QLPSSDPPNLHPYACDSAAYHT 60
           MRIRKRQ+PLP FSSLS            PPVQLHL     SSDPP ++P          
Sbjct: 1   MRIRKRQLPLPAFSSLSD-----------PPVQLHLPSSSSSSDPP-INPL--------- 60

Query: 61  NNALGKKDQLEQHDSRETTVFGAEA-SNGVLPLSSSSPQV-------GDGQWCERDKDFP 120
           +N   K+  L+Q+DSRET + GAE  +N +LP SSSS QV       G G+WCE++K FP
Sbjct: 61  DNNNQKQKLLQQYDSRETILIGAETINNALLPHSSSSSQVVVVFDVVGGGRWCEKEKAFP 120

Query: 121 LKKRRGSFERQSDDDQN--NADDQTTTAAA-AAAMESLPDHKKTTKNKKQPKLGLNLA-G 180
           LKKRRGSFER SD+D +  N D Q  T       M     +KK T ++KQ K+GL++  G
Sbjct: 121 LKKRRGSFERSSDEDNDDHNKDIQVATKLQDEKKMIKTKMNKKCTLSQKQSKVGLDIVVG 180

Query: 181 KKRSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRSRSLAAAA 240
           KKRSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVR+RSL  AA
Sbjct: 181 KKRSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRNRSL--AA 240

Query: 241 ATLKNIVTVDKDEKKP-----PPCPPPPSPSLTLASKKRTKLGLVKARSISSLLGQPDGM 300
           AT KNIV ++KDEKKP     P  PPPPS S +L +KKR KLG+VKARSISSLLGQPDG+
Sbjct: 241 ATPKNIVVIEKDEKKPSPSQFPSSPPPPS-SFSLTNKKRMKLGVVKARSISSLLGQPDGI 294

Query: 301 AAIPPPPPPSQSTLPNDNINQ 302
            A P   P   STL +DNI++
Sbjct: 301 VATPLSLP---STLHDDNIDK 294

The following BLAST results are available for this feature:

BLAST of CmoCh14G004160 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh14G004160 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGX5_CUCSA	9.4e-75	59.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G806230 PE=4 SV=1	[more]
A0A067JP86_JATCU	8.0e-50	46.13	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25554 PE=4 SV=1	[more]
A0A061EXI8_THECC	1.4e-49	43.01	Uncharacterized protein OS=Theobroma cacao GN=TCM_024932 PE=4 SV=1	[more]
A0A0D2QCR9_GOSRA	2.2e-47	45.14	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G156300 PE=4 SV=1	[more]
A0A067FU33_CITSI	2.8e-47	43.67	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g019760mg PE=4 SV=1	[more]

BLAST of CmoCh14G004160 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G42040.1	1.3e-30	37.07	WRC (InterPro:IPR014977)	[more]

BLAST of CmoCh14G004160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659084724\|ref\|XP_008443038.1\|	2.5e-76	60.83	PREDICTED: uncharacterized protein LOC103486754 isoform X2 [Cucumis melo]	[more]
gi\|449437904\|ref\|XP_004136730.1\|	1.3e-74	59.75	PREDICTED: uncharacterized protein LOC101223014 isoform X1 [Cucumis sativus]	[more]
gi\|778684741\|ref\|XP_011652086.1\|	1.3e-74	59.31	PREDICTED: uncharacterized protein LOC101223014 isoform X2 [Cucumis sativus]	[more]
gi\|659084726\|ref\|XP_008443039.1\|	2.3e-74	60.51	PREDICTED: uncharacterized protein LOC103486754 isoform X3 [Cucumis melo]	[more]
gi\|659084722\|ref\|XP_008443037.1\|	3.0e-74	59.50	PREDICTED: uncharacterized protein LOC103486754 isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR014977	WRC_dom

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated
GO:0032502	developmental process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032502	developmental process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G004160.1	CmoCh14G004160.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014977	WRC domain	PFAM	PF08879	WRC	coord: 176..216 score: 3.0
IPR014977	WRC domain	PROFILE	PS51667	WRC	coord: 174..218 score: 21
None	No IPR available	PANTHER	PTHR31602:SF19	SUBFAMILY NOT NAMED	coord: 165..232 score: 4.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh14G004160	Cucsa.242590	Cucumber (Gy14) v1	cgycmoB0675
CmoCh14G004160	CmaCh14G004120	Cucurbita maxima (Rimu)	cmacmoB244
CmoCh14G004160	CmaCh06G001060	Cucurbita maxima (Rimu)	cmacmoB798
CmoCh14G004160	Cla017551	Watermelon (97103) v1	cmowmB214
CmoCh14G004160	Csa3G806230	Cucumber (Chinese Long) v2	cmocuB226
CmoCh14G004160	MELO3C009616	Melon (DHL92) v3.5.1	cmomeB215
CmoCh14G004160	ClCG10G017600	Watermelon (Charleston Gray)	cmowcgB207
CmoCh14G004160	CSPI03G36370	Wild cucumber (PI 183967)	cmocpiB229
CmoCh14G004160	Lsi03G017440	Bottle gourd (USVL1VR-Ls)	cmolsiB230
CmoCh14G004160	Cp4.1LG03g04070	Cucurbita pepo (Zucchini)	cmocpeB245
CmoCh14G004160	MELO3C009616.2	Melon (DHL92) v3.6.1	cmomedB244
CmoCh14G004160	CsaV3_3G038720	Cucumber (Chinese Long) v3	cmocucB0270
CmoCh14G004160	Cla97C10G200470	Watermelon (97103) v2	cmowmbB230
CmoCh14G004160	Bhi11G002111	Wax gourd	cmowgoB0283
CmoCh14G004160	CsGy3G033830	Cucumber (Gy14) v2	cgybcmoB279
CmoCh14G004160	Carg03576	Silver-seed gourd	carcmoB0347
CmoCh14G004160	Carg01222	Silver-seed gourd	carcmoB0213

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh14G004160	CmoCh06G001000	Cucurbita moschata (Rifu)	cmocmoB225

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh14G004160	Cucurbita pepo (Zucchini)	cmocpeB255
CmoCh14G004160	Cucumber (Gy14) v2	cgybcmoB898
CmoCh14G004160	Wax gourd	cmowgoB0351