CmaCh16G001110.1 (mRNA) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATAATTCCCATAACCATGGCCTCCAAATTTCCAGTTCCCACATTCCCATTTTCCCCATCGTCTTCATCTTCATCTTCCTCGTCCATCTTATACCCCAAAACCCCCAAAATTCGTCTCTCCTTGTGTAATTTCCCTCTGCATCTCCGGCTTTACTCTCCATGGAATGGTTTAAAGCATTTGGGTATTTCAAGCAGAGGAAGGTTTCCCGGTATGGATATACTTTTTGATGATTGATTCAAGTAATAGTTCATATTTGTTTGAATTAAACGTTTATTGATCTTTGTTCTTGTTATGTTGTCTAAAATGGTGTTGTTGTAGAGAGGAGGAAGAGAATTCCTAAGGGGAAGGCTGTTTTTGCATCTCTGTTTGGGGTTGGAGCTCCGGAGGCATTGGTTATTGGGGTTGTGGCTCTGTTGGTTTTTGGTCCCAAGGGCCTTGCTGAGGTGAGTGGTATAAATCATGTAGATGACTGAAATTTTGGAAATATTTGGCTGCCTCTGATGTGTTCTTTTACACATTTTAACTTGTTGCGGAACCTGAATATTGAAGTATTACATTTCATTCTCGTTTAAGGTATCTGTTAGGCTTTGGAGTTGTGCTGGGAATAGCAGCATGAAACTTCACTTACATTAATACTCTAGTCTTTATTGTCTTGAGCCACTGCGGAGAATCACCAGGTTGTATTGTTGTTGATGTCAACAAGGATAGCTTCTAATGTTATTGCTCAGCCTTCGATACTAGGGAGAGATTTCCACACCTTATAAGAAATGTTTCATTCTCATCTCCAATCAATATGGGATCTCACGATCCACCCTCCTTGGGGGCTCCTCGCTGGCACATCGCTCGGTGTCTGGCTTTAATCCATTTGTAACCGCACAAGCCTACTGCTAACTGATATTATCTACTTTGGCCTATTACGTATCACCGTCAACCTTACGGTGTTAAAATGCGTCTACTAGGGATAGGTTTCCACAACTTATAAGGAATGTTTCGTTCCCCTTTCCAACCAACGTGGGATCTCACAATCCACCCTCCTTAGGGTCTAGCTTCCTCACTAGCACACCGCTTGGTGTCTAGCTCTAATACCATTTGTAACAGCCTAAGCCCACCGCCGATAGATATTGTCCGCTTTGGCCCGTTATGTATCCTCGTCAACCTCACGATTTTAAAACGCGTCTACTAGGGAGAGATTTCCACACCTTATAAGGAATGTTTCGTTCCCTTCTCCAACCAACGTAAGATCTCACAATCCATCCCCCTTGGGGGCCAGCGTCCTCACTAGCACACTGTTCGGTGTCTAACTTTAATACCATTTGTAACAATTCAAGCCCACCGATAGCAGATATTATCCGTTTTGGTCCGTTACGTATCACAGTCAGCTTCATAGTTTTAAAACGCGTCTAATAGGGAGAGGTTTCCACACCTTTATAAGGAATGTTTCATTCCCCTCTCCAACGGACGTGGGATCTCACATGAACTATCCTAACCCCACCCATCAAACAAAAGGGAATTTGTTTTTGATTGAGAGCATCTAGGATATAATAAGACCCTTTGCGTCGTATAAAAAAAAAACTCAAAGTGACATTGATTACCAAGTCTTTACAAAAACCTGAAAACCATTTGGACAGGTTTGCTGTAAAGGATATCAGTAAGTACTTTCGTTGGACTGGAATTTAGTTTACTTATTTATATGCCAGGTTGCTCGAACTTTGGGGAAGACCTTACGTACATTTCAACCCACTATAAGAGAACTTCAGGTAATCATATTTCGGTTTTTGAGATTTTCCAGCATCACTTCTTAAAGACCTTCTTGTGGTTTTTTGCTCTTCATGTATGTCTGTAGGACGTTTCTCGAGAATTCAAGACCACACTTGAGCAAGAAATTGGTCTCGACGAAATCTCGAGTCCAGTCGAAAGCTCATACAATTCAAGCAAATCAGATACCTTCTCAAACCCACCTTTTGTTCCTAAAGCAGAAGAGTCTTTTGCAGTGGCTGAACCAAGTGAGTGGTTAACTTATTTGTCATCCATATTTTTATTTATTATCAGCACTTGTAGTATTCTAGGGAAAGATTTCAAAGCTACATAGAAAAAGTAGAATGCCAAAGGGGAAAAGAATATTGGTAATCAGCCTTGGTTCGCCGTCGGGCATCGTGTCTACGAATGATACGATTGGGTTCAATCATTAGGGATATAGAATCATCATTCTGTCAGCCTCGACTATTATACGATAATGAAAGATCGTTTTCTTATGTATATAAACAGCTGATAATTCTTTATCAGCAAGCAAAGCATACACCACTGAAGAGTACCTTAAGATTGCTAAAACCAAATCACTTTGGTCCTATTTGGTAGCTTTTTGGATGAACCAGTGTTTATAAGCTTTGTTTTAAAAATGCGCTATCACTCTAACATGTATGAACTTGTAACAGGAGGCGTCGAAGCACCTGTCGTGGTGGCTCCCGAACTCCAAAATCTTGAAGCAGGTAAGGTTGAGGAGTCTACTGCCTCAAGTCCTGGAGCTGAAAAATAAAGTTATTAGAATCGATTTTGGATGGAGGAGTATTTCTTTTAGGTGGTCGATTTAGAAAATTATGTGTTAGTGATTGAAGCTCCTAGGAGAGAAATGATTCTATTAGTGTCTTGGAACTTAACCCGCTTATTGATCTGGTCATGATGAAATGGGGTAAATGGTCGAGGCTACTTGAAGGCTTACTTTTTGGTTGACAGGTATTGTGACAGGTATTCCCATGATCGATTCAATAGATCTTTTCTTTTTCCGTTCATATTTCGAATTGGGTTTATCCTTGTAGTAATCGTATGAACACGATGGTAGTATAAACTCGATGGTACCCATTCAGATTCAACGTGAGAAAAGAACCATGCAGCAACCTGAGCCCTAAAGAGGAGAGGGGCAGGAGCACTCCAATTCGAAAGGCGTGCCGTTTGAAAGACTATATATGTGTATATATATATATATAATCCAAAGTTTTGTAACAAATTTGCCATAATTAAAAATATGCATAGATATTACAAGGTTAAACGAGCACAATAAGAAAAGAAGAAAAAGACAAGGAATATTAG ATAATTCCCATAACCATGGCCTCCAAATTTCCAGTTCCCACATTCCCATTTTCCCCATCGTCTTCATCTTCATCTTCCTCGTCCATCTTATACCCCAAAACCCCCAAAATTCGTCTCTCCTTGTGTAATTTCCCTCTGCATCTCCGGCTTTACTCTCCATGGAATGGTTTAAAGCATTTGGGTATTTCAAGCAGAGGAAGGTTTCCCGAGAGGAGGAAGAGAATTCCTAAGGGGAAGGCTGTTTTTGCATCTCTGTTTGGGGTTGGAGCTCCGGAGGCATTGGTTATTGGGGTTGTGGCTCTGTTGGTTTTTGGTCCCAAGGGCCTTGCTGAGGTTGCTCGAACTTTGGGGAAGACCTTACGTACATTTCAACCCACTATAAGAGAACTTCAGGACGTTTCTCGAGAATTCAAGACCACACTTGAGCAAGAAATTGGTCTCGACGAAATCTCGAGTCCAGTCGAAAGCTCATACAATTCAAGCAAATCAGATACCTTCTCAAACCCACCTTTTGTTCCTAAAGCAGAAGAGTCTTTTGCAGTGGCTGAACCAAGAGGCGTCGAAGCACCTGTCGTGGTGGCTCCCGAACTCCAAAATCTTGAAGCAGGTAAGGTTGAGGAGTCTACTGCCTCAAGTCCTGGAGCTGAAAAATAAAGTTATTAGAATCGATTTTGGATGGAGGAGTATTTCTTTTAGGTGGTCGATTTAGAAAATTATGTGTTAGTGATTGAAGCTCCTAGGAGAGAAATGATTCTATTAGTGTCTTGGAACTTAACCCGCTTATTGATCTGGTCATGATGAAATGGGGTAAATGGTCGAGGCTACTTGAAGGCTTACTTTTTGGTTGACAGGTATTGTGACAGGTATTCCCATGATCGATTCAATAGATCTTTTCTTTTTCCGTTCATATTTCGAATTGGGTTTATCCTTGTAGTAATCGTATGAACACGATGGTAGTATAAACTCGATGGTACCCATTCAGATTCAACGTGAGAAAAGAACCATGCAGCAACCTGAGCCCTAAAGAGGAGAGGGGCAGGAGCACTCCAATTCGAAAGGCGTGCCGTTTGAAAGACTATATATGTGTATATATATATATATAATCCAAAGTTTTGTAACAAATTTGCCATAATTAAAAATATGCATAGATATTACAAGGTTAAACGAGCACAATAAGAAAAGAAGAAAAAGACAAGGAATATTAG ATGGCCTCCAAATTTCCAGTTCCCACATTCCCATTTTCCCCATCGTCTTCATCTTCATCTTCCTCGTCCATCTTATACCCCAAAACCCCCAAAATTCGTCTCTCCTTGTGTAATTTCCCTCTGCATCTCCGGCTTTACTCTCCATGGAATGGTTTAAAGCATTTGGGTATTTCAAGCAGAGGAAGGTTTCCCGAGAGGAGGAAGAGAATTCCTAAGGGGAAGGCTGTTTTTGCATCTCTGTTTGGGGTTGGAGCTCCGGAGGCATTGGTTATTGGGGTTGTGGCTCTGTTGGTTTTTGGTCCCAAGGGCCTTGCTGAGGTTGCTCGAACTTTGGGGAAGACCTTACGTACATTTCAACCCACTATAAGAGAACTTCAGGACGTTTCTCGAGAATTCAAGACCACACTTGAGCAAGAAATTGGTCTCGACGAAATCTCGAGTCCAGTCGAAAGCTCATACAATTCAAGCAAATCAGATACCTTCTCAAACCCACCTTTTGTTCCTAAAGCAGAAGAGTCTTTTGCAGTGGCTGAACCAAGAGGCGTCGAAGCACCTGTCGTGGTGGCTCCCGAACTCCAAAATCTTGAAGCAGGTAAGGTTGAGGAGTCTACTGCCTCAAGTCCTGGAGCTGAAAAATAA MASKFPVPTFPFSPSSSSSSSSSILYPKTPKIRLSLCNFPLHLRLYSPWNGLKHLGISSRGRFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRTFQPTIRELQDVSREFKTTLEQEIGLDEISSPVESSYNSSKSDTFSNPPFVPKAEESFAVAEPRGVEAPVVVAPELQNLEAGKVEESTASSPGAEK
BLAST of CmaCh16G001110.1 vs. Swiss-Prot
Match: TATB_PEA (Sec-independent protein translocase protein TATB, chloroplastic OS=Pisum sativum GN=TATB PE=1 SV=1) HSP 1 Score: 163.7 bits (413), Expect = 2.2e-39 Identity = 97/183 (53.01%), Postives = 124/183 (67.76%), Query Frame = 1
BLAST of CmaCh16G001110.1 vs. Swiss-Prot
Match: TATB_ARATH (Sec-independent protein translocase protein TATB, chloroplastic OS=Arabidopsis thaliana GN=TATB PE=1 SV=1) HSP 1 Score: 148.3 bits (373), Expect = 9.6e-35 Identity = 102/195 (52.31%), Postives = 124/195 (63.59%), Query Frame = 1
BLAST of CmaCh16G001110.1 vs. Swiss-Prot
Match: TATB_ORYSJ (Sec-independent protein translocase protein TATB, chloroplastic OS=Oryza sativa subsp. japonica GN=TATB PE=2 SV=2) HSP 1 Score: 125.9 bits (315), Expect = 5.1e-28 Identity = 81/160 (50.62%), Postives = 97/160 (60.62%), Query Frame = 1
BLAST of CmaCh16G001110.1 vs. Swiss-Prot
Match: TATB_MAIZE (Sec-independent protein translocase protein TATB, chloroplastic OS=Zea mays GN=TATB PE=1 SV=1) HSP 1 Score: 120.9 bits (302), Expect = 1.6e-26 Identity = 80/171 (46.78%), Postives = 98/171 (57.31%), Query Frame = 1
BLAST of CmaCh16G001110.1 vs. Swiss-Prot
Match: TATA_THEEB (Sec-independent protein translocase protein TatA OS=Thermosynechococcus elongatus (strain BP-1) GN=tatA PE=3 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 5.3e-09 Identity = 36/75 (48.00%), Postives = 48/75 (64.00%), Query Frame = 1
BLAST of CmaCh16G001110.1 vs. TrEMBL
Match: A0A0A0L6M5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G183320 PE=4 SV=1) HSP 1 Score: 277.7 bits (709), Expect = 1.2e-71 Identity = 172/278 (61.87%), Postives = 182/278 (65.47%), Query Frame = 1
BLAST of CmaCh16G001110.1 vs. TrEMBL
Match: I3S6U9_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 181.0 bits (458), Expect = 1.5e-42 Identity = 104/170 (61.18%), Postives = 123/170 (72.35%), Query Frame = 1
BLAST of CmaCh16G001110.1 vs. TrEMBL
Match: A0A058ZXI3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00283 PE=4 SV=1) HSP 1 Score: 176.8 bits (447), Expect = 2.8e-41 Identity = 112/197 (56.85%), Postives = 131/197 (66.50%), Query Frame = 1
BLAST of CmaCh16G001110.1 vs. TrEMBL
Match: A0A067E9T8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023111mg PE=4 SV=1) HSP 1 Score: 174.9 bits (442), Expect = 1.1e-40 Identity = 102/169 (60.36%), Postives = 123/169 (72.78%), Query Frame = 1
BLAST of CmaCh16G001110.1 vs. TrEMBL
Match: A0A067EDJ1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023111mg PE=4 SV=1) HSP 1 Score: 174.9 bits (442), Expect = 1.1e-40 Identity = 102/169 (60.36%), Postives = 123/169 (72.78%), Query Frame = 1
BLAST of CmaCh16G001110.1 vs. TAIR10
Match: AT5G52440.1 (AT5G52440.1 Bacterial sec-independent translocation protein mttA/Hcf106) HSP 1 Score: 148.3 bits (373), Expect = 5.4e-36 Identity = 102/195 (52.31%), Postives = 124/195 (63.59%), Query Frame = 1
BLAST of CmaCh16G001110.1 vs. TAIR10
Match: AT5G28750.1 (AT5G28750.1 Bacterial sec-independent translocation protein mttA/Hcf106) HSP 1 Score: 51.6 bits (122), Expect = 6.9e-07 Identity = 32/82 (39.02%), Postives = 48/82 (58.54%), Query Frame = 1
BLAST of CmaCh16G001110.1 vs. NCBI nr
Match: gi|659077565|ref|XP_008439273.1| (PREDICTED: sec-independent protein translocase protein TATB, chloroplastic isoform X2 [Cucumis melo]) HSP 1 Score: 284.6 bits (727), Expect = 1.4e-73 Identity = 175/264 (66.29%), Postives = 184/264 (69.70%), Query Frame = 1
BLAST of CmaCh16G001110.1 vs. NCBI nr
Match: gi|659077563|ref|XP_008439272.1| (PREDICTED: sec-independent protein translocase protein TATB, chloroplastic isoform X1 [Cucumis melo]) HSP 1 Score: 283.9 bits (725), Expect = 2.3e-73 Identity = 175/265 (66.04%), Postives = 184/265 (69.43%), Query Frame = 1
BLAST of CmaCh16G001110.1 vs. NCBI nr
Match: gi|778679659|ref|XP_011651175.1| (PREDICTED: sec-independent protein translocase protein TATB, chloroplastic isoform X3 [Cucumis sativus]) HSP 1 Score: 282.7 bits (722), Expect = 5.2e-73 Identity = 172/265 (64.91%), Postives = 182/265 (68.68%), Query Frame = 1
BLAST of CmaCh16G001110.1 vs. NCBI nr
Match: gi|778679656|ref|XP_011651174.1| (PREDICTED: sec-independent protein translocase protein TATB, chloroplastic isoform X2 [Cucumis sativus]) HSP 1 Score: 278.5 bits (711), Expect = 9.8e-72 Identity = 172/277 (62.09%), Postives = 182/277 (65.70%), Query Frame = 1
BLAST of CmaCh16G001110.1 vs. NCBI nr
Match: gi|778679653|ref|XP_004140768.2| (PREDICTED: sec-independent protein translocase protein TATB, chloroplastic isoform X1 [Cucumis sativus]) HSP 1 Score: 277.7 bits (709), Expect = 1.7e-71 Identity = 172/278 (61.87%), Postives = 182/278 (65.47%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
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