CmaCh06G010910.1 (mRNA) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTGATCGCAGGTCGCCAAGGTTTTTCTACTGCCTCCCGGCAGCTGCTCAGTGTACGCAGCCATGGTGACGTCGCCGGTGGTGAACACCTATCCACTTTCCAGCTACACCTTCGGTACTAAAGAGCCGAAGCTCGAGAAGGACACCTCCGTCGCCGATCGTCTTGCTCGCATGAAAGTCAAGTACTGCAAATTTACTCCATTTCTTAAACCCTAACTTTATGGTTTTTTCAACGTTTTAGAGTTGTATTTTCTCGAAAGTTAGGAACTATGGCCGTTTCTTAGTGTGGATTCCTGGTCATTTTACATTTTATGTGTTTAGCTTTACTAGAAACCATTTAATGTGTTTCTAATTTCAAGAAATGCGCGAGCTTGGACTAAAGTTCTGGATGAAATTGTGTTATTGATTTTATTCAAGCCATTTGTTCGTTGATAAACTCAGTGCTTTCTTATTGCTATTTGTTTCGTTGTTTCGTCATCGCCTGGAAATTTTGTCTTCCATTTATTGGTTTTGGAGGGGCTTTGACGGGAATGAGTAACTTGTCCTGGTTCTTGGTTCACAGCTATATGAAGGAGGGCATGAGGACGAGTGTTGAAGCAATTCTTCTGGTCAGTGCGCATCTTCATCATTTTTCATCTCAATGTACTCATTTCCTTATTATTATTATCTTTCTAAAAAATTTGAAGTTTAAAGAGATCATCAAGATATAGGTGTACTAGTTGGATACCATGGTTTGTGTTTTTCAGTTGATATTGAAATTCATTGAACTGTGAATCACTGAAATGTTTTATAACGAATTATAATATTTAAAAGGTACAAAAATATTTATCGTCTTGCATATCTACATCCTTCATCTAGAATATTTGAGTATATGTAGGCTATTAGAAGGAAAGTTTCATTGCCGAATCCTTTATTGTCCTATCTGATCTTTACCCGAGCAGCACGCGTTGGAAGACAAGATGACTAAATTTGAACTTCCATCATGTCATCTTTTAGATTATACCCGCCTATGGTTTCCTCCAGCTAGTAAATTTAACATGAGGTCTCCCCACCTATGACTGCTTCCAACTGTAAATTTTTCCCGTAATCCTTCGAAGCCCATGTACATTTTGATGCTCAACAAACATGTTGTTTCTTATATGTATGTACTGAATACATTTAATGTGTAATATATTAATTAATCTGTTTTTGGTTGCATAGCTGAAGTAGATATTTTAGTACCTCTGTAACTGACATTTATGTATTTTGCAAAAAAGCTCCAAAATATTCAAAATATTTTAGGATTTAAGCCAAGGAAAGTTGGATTTGAAATACAGAATGTGCCCAAAATGTAAAAACAGGTTCACTGAAGTTGATGCTTTAGGAATTTCCTACCAGACAATAACAATTTATTTACGATATTTGTGGATGAGATGAAAGTTCAACTGCATGTACTTGGGAGAGCCAGTAGGATTTCGATTTATCGCATTGTGCTTCCCAACCTACCTATAGTCTAAGTAGCATTCTACTAGTAAGATGGTGACTATAACTGATTTCATTTTGTTAAGATGGCCAGCTCGAGGACCAACGAGGATCTTGGCTCTTTATTCTAGAGGTGAAGGAATCGACTTTCTCCTTAATGGTCTTGATTAAGGTCCCATTTAGGAAATTAGGGAGGCAATAATACTGCAACCAGGAGAGGTAATAATACTGCTGGAAGTCTCAGACGTATATCTCCAAGTTCATTTAGGAAATTAATAATTACTGTGCTGAAAATAGGAAGGGAATCCTATAAAGTCTTGGAAGATCTTTAGCCACAAAAAGGAGGATGGTTACTTGCTTCCACGAATTTGGGTAAAAAAGATCAACATATTTGTTGAAATGCGAGGGTTTCTAGAAGCTTGATTTTTAGAGAAACCTGTTGGATGTTGAAATACAGGGGCAGCCTAATGTTTCAAATTTTGATAAGAAAAAGAGCATGAAACCAACGGGAGACCAAAAACAGGTGGATAAGCAGTCCAACCCCGAAGCTAAAGGGGTTTACAGAATAGGACCTCAATTATACAAGGCATACTATAATTACAAAAAGCAACGTGCGAATTGAAACAAATACTTTATTGAGTTCTTTTTACGTTGCTTTTTGTTTTACTCCTTTATGGAGTTTGATCATTTGAGCAATAGTATATTTTCATTACATCAATGAAACGTTTTGTTTCTTGTTCAAAAAATTACAAAAACATTGTTTTTTGGGCACACAAAGAGGAAGCTGATTGGAATGCAGGATCCTTGCACCCCTTAGATTTGTTTCTGAAGATTCTATAGTTTTTCTCGGCTTATGATTCAAACAACAGCTTTGATAGAATTAAACAAGGGAGTTCTAGTTTTCTGCCATTTTAAGTTTGGCACTGAATGTTTCCTTAATTCATTAACTTTCTCTTTAGTTGGTGTATTTTAGTGACTAATATTTAAGAGAACCATGTACTTTACTGTGATGGAATTTTATATTTTTCGTTTTTTCTTTTTACTTCCACAGGTGCAAGAACATAAGCATCCCCATATTCTACTTCTGCAAATTGGAAATACCTTTTGCAAGCTCCCTGGTGGCCGGTTGAAGCCAGGAGAAAATGGTAAGATTTTATATACATTTGAAGCCCCCCTGCATCCCATTGAGTAAAAAATCTCTCTCTCATGTTTTATCTTAATATCCACAGAAATTGAAGGTTTAAAGAGGAAACTGACGAGCAAACTGGGTGCAAATTCACCAGCCCTCCAGCCTGATTGGCAGGTTTGGGTCATCTCTTGCTGTGTGCAAATCTATTCGCAGAAGTTATATTTGTTTCTACCCAAAGTTATATTATTCATTGCACATTTTCTGCAGATTGGTGAATGTGTGGCTATTTGGTGGAGACCAAACTTTGAAACTGTTATGTATCCTTATTGCCCCCCTCATATAACGAAACCCAAGGTATGATCTCTCTCTCTCATGTTCCCCAGCCCCCAGCAGTGCTGATAGCACTTTTTTGGTGGTGACTTTGATAGGGAAGAATGTAGGCTATCAGTTATCTATCTATATGCATGTATGTATGTGCCTGTGTATACTATGCAGATTATTTATTACTCAAGCTGATTGGATAGCCTCTTTACCCTAGGGAAGGCCCTTGTAACAGCCCAAGCCCACCGTTAGCAAATATTGTCCTCTTTGGGTTTTTTCTTTCGAGTTTTTATAACGTGTCTGCTAGGGAGAGGTTTCTACACTCTTATAAAGAATGTTTTGTTCCCCTCTCCAACTAATGTGGGATCTCACAATCCACCCCCCCTTCGAGGCCCAGTGTCCTCGCTGGCACTCGTTCCTCTCTCCATTAAATGTGCGATTTCACAATTCACCCCCTTCGAGGCTCACACAAACGTTCATCTCTCAAATTGATGTGGGATCTCACAATCCACCCCCTTCAGGGTCTAGCGTCCTCGCTGACACACAGCCCGATGTCCACCCCCCTTCGCGGCTCAGCGTCCTTGCTAGCATACCGCCCAGTGTTTGGCTTTAATACCATTTATAACAGCTCAAGCCCACCACTAACAAATTTATAACGAGTCTCCTATGGAGAGGTTTCCACACTCTTATAAAGAATGTTTCATTCCTCTTTCCAACCAATATGGGATCTCACAATGGTCCACTGTTTTCTTACTTTGATTGGCATTATAAAGAGAGTTGAAATTATTTTTAGGAAGCTTATTTTTCCCCAAAAAAAAATCCTAATTAGGGTTTTTGATGATCCAGGAATGCAAAAAGCTTTTCATTGTTCACTTGTCTGAGAGAGAGTACTTCGCAGTTCCTAAAAATTTGAAGCTGCTTGCAGTTCCTTTGTTTGAACTCTATGACAATGTTCAGGTAAGTTGCATTTTTCTTTGTAGATCCTCATAAGTAGGAAAAAAAAAGTTTATTGTCATGCATATTCTTAAGCGATTTTTGGCATGTCGGGCAATATCGAAAACCTGCTTAATTATAAGCAATTAGTATGTGGTGGTGGTGGTTATCTAGGGATAGATGAATTAAGATAGATTTTCTGGATGCTGGATGATACTGATAGAGTACATGTAAATCCATTTGTCTCAAAATACCATGCATTTTATTAGCTAAACACTAGTTTTCGGATATCGCACTTGATCACAGAGATACGGACCTGTTATATCGACGATCCCGCAGCAGCTTTCCAGGTTTCAGTTCAACATGATCACCACATGAGCTTGCAAGACAAGAACTTAAAATTTGTGGCATGAACAGACTCCAAATTTGCAGCTGTGAGATATTCCTCTTAGCTTAGTTAGAACTTAAGGGGACATCATGAAACCTTTCTTGAGTTAGGATAGCATACTTATTATAGACTTTTTGTTCTCGACGTTTTCGTCGAAGTGTTTATGAGCCAGAACCCGAAAAAATTTATATTACTTCTAACAATAGCAGAAAAATGAAAACCGACTGACGGTTTGTGTAACGATTTAACTTGATGAAAATCTTAGATGGGTGTAATGTATGTTGAATCAATTGTAACAGTGGTTAAATTGTGGAAACAAAGAATGTTGAATCAATAGTAACAGTGGTTAAATTGTGGAAACAAAGA CTGATCGCAGGTCGCCAAGGTTTTTCTACTGCCTCCCGGCAGCTGCTCAGTGTACGCAGCCATGGTGACGTCGCCGGTGGTGAACACCTATCCACTTTCCAGCTACACCTTCGGTACTAAAGAGCCGAAGCTCGAGAAGGACACCTCCGTCGCCGATCGTCTTGCTCGCATGAAAGTCAACTATATGAAGGAGGGCATGAGGACGAGTGTTGAAGCAATTCTTCTGGTGCAAGAACATAAGCATCCCCATATTCTACTTCTGCAAATTGGAAATACCTTTTGCAAGCTCCCTGGTGGCCGGTTGAAGCCAGGAGAAAATGAAATTGAAGGTTTAAAGAGGAAACTGACGAGCAAACTGGGTGCAAATTCACCAGCCCTCCAGCCTGATTGGCAGATTGGTGAATGTGTGGCTATTTGGTGGAGACCAAACTTTGAAACTGTTATGTATCCTTATTGCCCCCCTCATATAACGAAACCCAAGGAATGCAAAAAGCTTTTCATTGTTCACTTGTCTGAGAGAGAGTACTTCGCAGTTCCTAAAAATTTGAAGCTGCTTGCAGTTCCTTTGTTTGAACTCTATGACAATGTTCAGAGATACGGACCTGTTATATCGACGATCCCGCAGCAGCTTTCCAGGTTTCAGTTCAACATGATCACCACATGAGCTTGCAAGACAAGAACTTAAAATTTGTGGCATGAACAGACTCCAAATTTGCAGCTGTGAGATATTCCTCTTAGCTTAGTTAGAACTTAAGGGGACATCATGAAACCTTTCTTGAGTTAGGATAGCATACTTATTATAGACTTTTTGTTCTCGACGTTTTCGTCGAAGTGTTTATGAGCCAGAACCCGAAAAAATTTATATTACTTCTAACAATAGCAGAAAAATGAAAACCGACTGACGGTTTGTGTAACGATTTAACTTGATGAAAATCTTAGATGGGTGTAATGTATGTTGAATCAATTGTAACAGTGGTTAAATTGTGGAAACAAAGAATGTTGAATCAATAGTAACAGTGGTTAAATTGTGGAAACAAAGA ATGGTGACGTCGCCGGTGGTGAACACCTATCCACTTTCCAGCTACACCTTCGGTACTAAAGAGCCGAAGCTCGAGAAGGACACCTCCGTCGCCGATCGTCTTGCTCGCATGAAAGTCAACTATATGAAGGAGGGCATGAGGACGAGTGTTGAAGCAATTCTTCTGGTGCAAGAACATAAGCATCCCCATATTCTACTTCTGCAAATTGGAAATACCTTTTGCAAGCTCCCTGGTGGCCGGTTGAAGCCAGGAGAAAATGAAATTGAAGGTTTAAAGAGGAAACTGACGAGCAAACTGGGTGCAAATTCACCAGCCCTCCAGCCTGATTGGCAGATTGGTGAATGTGTGGCTATTTGGTGGAGACCAAACTTTGAAACTGTTATGTATCCTTATTGCCCCCCTCATATAACGAAACCCAAGGAATGCAAAAAGCTTTTCATTGTTCACTTGTCTGAGAGAGAGTACTTCGCAGTTCCTAAAAATTTGAAGCTGCTTGCAGTTCCTTTGTTTGAACTCTATGACAATGTTCAGAGATACGGACCTGTTATATCGACGATCCCGCAGCAGCTTTCCAGGTTTCAGTTCAACATGATCACCACATGA MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
BLAST of CmaCh06G010910.1 vs. Swiss-Prot
Match: CFIS2_ARATH (Pre-mRNA cleavage factor Im 25 kDa subunit 2 OS=Arabidopsis thaliana GN=CFIS2 PE=1 SV=1) HSP 1 Score: 378.6 bits (971), Expect = 4.1e-104 Identity = 177/200 (88.50%), Postives = 188/200 (94.00%), Query Frame = 1
BLAST of CmaCh06G010910.1 vs. Swiss-Prot
Match: CPSF5_BOVIN (Cleavage and polyadenylation specificity factor subunit 5 OS=Bos taurus GN=NUDT21 PE=2 SV=1) HSP 1 Score: 251.9 bits (642), Expect = 5.8e-66 Identity = 118/189 (62.43%), Postives = 141/189 (74.60%), Query Frame = 1
BLAST of CmaCh06G010910.1 vs. Swiss-Prot
Match: CPSF5_HUMAN (Cleavage and polyadenylation specificity factor subunit 5 OS=Homo sapiens GN=NUDT21 PE=1 SV=1) HSP 1 Score: 251.9 bits (642), Expect = 5.8e-66 Identity = 118/189 (62.43%), Postives = 141/189 (74.60%), Query Frame = 1
BLAST of CmaCh06G010910.1 vs. Swiss-Prot
Match: CPSF5_MOUSE (Cleavage and polyadenylation specificity factor subunit 5 OS=Mus musculus GN=Nudt21 PE=1 SV=1) HSP 1 Score: 251.9 bits (642), Expect = 5.8e-66 Identity = 118/189 (62.43%), Postives = 141/189 (74.60%), Query Frame = 1
BLAST of CmaCh06G010910.1 vs. Swiss-Prot
Match: CPSF5_PONAB (Cleavage and polyadenylation specificity factor subunit 5 OS=Pongo abelii GN=NUDT21 PE=2 SV=1) HSP 1 Score: 251.9 bits (642), Expect = 5.8e-66 Identity = 118/189 (62.43%), Postives = 141/189 (74.60%), Query Frame = 1
BLAST of CmaCh06G010910.1 vs. TrEMBL
Match: A0A0A0L8Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122550 PE=4 SV=1) HSP 1 Score: 415.6 bits (1067), Expect = 3.4e-113 Identity = 199/200 (99.50%), Postives = 200/200 (100.00%), Query Frame = 1
BLAST of CmaCh06G010910.1 vs. TrEMBL
Match: A0A061G0V3_THECC (Cleavage/polyadenylation specificity factor, 25kDa subunit OS=Theobroma cacao GN=TCM_015155 PE=4 SV=1) HSP 1 Score: 409.1 bits (1050), Expect = 3.2e-111 Identity = 194/200 (97.00%), Postives = 198/200 (99.00%), Query Frame = 1
BLAST of CmaCh06G010910.1 vs. TrEMBL
Match: V4U7E9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005929mg PE=4 SV=1) HSP 1 Score: 408.3 bits (1048), Expect = 5.4e-111 Identity = 194/199 (97.49%), Postives = 197/199 (98.99%), Query Frame = 1
BLAST of CmaCh06G010910.1 vs. TrEMBL
Match: A0A0D2MX37_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G119000 PE=4 SV=1) HSP 1 Score: 406.8 bits (1044), Expect = 1.6e-110 Identity = 193/200 (96.50%), Postives = 197/200 (98.50%), Query Frame = 1
BLAST of CmaCh06G010910.1 vs. TrEMBL
Match: B9R9C7_RICCO (Pre-mRNA cleavage factor im, 25kD subunit, putative OS=Ricinus communis GN=RCOM_1496400 PE=4 SV=1) HSP 1 Score: 405.2 bits (1040), Expect = 4.6e-110 Identity = 193/200 (96.50%), Postives = 196/200 (98.00%), Query Frame = 1
BLAST of CmaCh06G010910.1 vs. TAIR10
Match: AT4G25550.1 (AT4G25550.1 Cleavage/polyadenylation specificity factor, 25kDa subunit) HSP 1 Score: 378.6 bits (971), Expect = 2.3e-105 Identity = 177/200 (88.50%), Postives = 188/200 (94.00%), Query Frame = 1
BLAST of CmaCh06G010910.1 vs. TAIR10
Match: AT4G29820.1 (AT4G29820.1 homolog of CFIM-25) HSP 1 Score: 243.0 bits (619), Expect = 1.5e-64 Identity = 111/193 (57.51%), Postives = 145/193 (75.13%), Query Frame = 1
BLAST of CmaCh06G010910.1 vs. NCBI nr
Match: gi|449432171|ref|XP_004133873.1| (PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucumis sativus]) HSP 1 Score: 415.6 bits (1067), Expect = 4.9e-113 Identity = 199/200 (99.50%), Postives = 200/200 (100.00%), Query Frame = 1
BLAST of CmaCh06G010910.1 vs. NCBI nr
Match: gi|590672648|ref|XP_007038670.1| (Cleavage/polyadenylation specificity factor, 25kDa subunit [Theobroma cacao]) HSP 1 Score: 409.1 bits (1050), Expect = 4.5e-111 Identity = 194/200 (97.00%), Postives = 198/200 (99.00%), Query Frame = 1
BLAST of CmaCh06G010910.1 vs. NCBI nr
Match: gi|567858442|ref|XP_006421904.1| (hypothetical protein CICLE_v10005929mg [Citrus clementina]) HSP 1 Score: 408.3 bits (1048), Expect = 7.8e-111 Identity = 194/199 (97.49%), Postives = 197/199 (98.99%), Query Frame = 1
BLAST of CmaCh06G010910.1 vs. NCBI nr
Match: gi|1009122478|ref|XP_015878023.1| (PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2 [Ziziphus jujuba]) HSP 1 Score: 408.3 bits (1048), Expect = 7.8e-111 Identity = 194/200 (97.00%), Postives = 197/200 (98.50%), Query Frame = 1
BLAST of CmaCh06G010910.1 vs. NCBI nr
Match: gi|823149430|ref|XP_012474578.1| (PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2 [Gossypium raimondii]) HSP 1 Score: 406.8 bits (1044), Expect = 2.3e-110 Identity = 193/200 (96.50%), Postives = 197/200 (98.50%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
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