CmaCh01G014910.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh01G014910.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	DNA-directed RNA polymerase subunit beta
Location	Cma_Chr01 : 10474171 .. 10476886 (-)
Sequence length	1070

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGACCAAATAAAAAGATTAATATTTTAATTTAATCAAAATAAAAATAAAAAAAACAAATCAAAATCGGCGCCTCACCTCCCAAACGCCAATCTATCATCAGCTATCGATTTCATCAGAGACGAAGGAGAAGAAGGAAAGGAAGGGAAATAATCTTCTCCGGCGAGAGGATGTCATGTTGTTCGTCCTTATCAGCGGCTCCTACATCCATGTCTTTGATTTCAAAGCGCAAATTCACGAGATCCGTTAATAAACATGTGATCGTTTCCATGAATTCTCGCTTCAGAGCTTCTGCAGAAGTTCCTGATTTTCTTCCTGCCGATTGGTACGCACACAAACTTCGAGAATTCCGATTTTCGCTGATTCGTTTTTAGTTTTCGAGTTTTTGCGTAGAATTAATCGAGTATAGATTTGATTCCTAGAGGAATGGGAGAATGATTTTGTTCATTTTGAATTATGAATCGATGTATTTAAGATTTTCAATTCACTTCGTGTTTTTATCCAGAAATATGGCGCGACTGTGTTTCCAATGACCTTGAAATTATTGAGTTCAACAAATTGGATGTTTGGTTTCCATGAGGCTCTCTTTTGGCTATTGTGGAAAATTCCTTATTTCTGTATTGTTCGCTGATGTTGAAGTTTCTAGGAAATGTTTGCTTAGGAATCAAATTCCTTATCCATTAGATTGTGCATGATAAGTCGATGAGTTTGGCGGTGTTGGAATTCATATTCCTGCTTTATTTTATCCTTTCATTCTCACAGCCAAACAGTTCCATGAAACTATGTGCGACTTTGGTAGATTTGTGATAGAATCTATTTGTAACAACTCAAGCCTACCACTAACCACAGATATTGTTCTCTTTGGGTTTTCCTTTTCAGACTTTCTCTCAAAGTTTTTAATTTTTAAAGGCATCGGTTAGAGAGAGATTTCCACACTCTCATAAAAAATGTTTCGTTTTCCTTCCCGACCGATGTGGGATCTCGAAATCCACACCCCTTCGTGGCCTAGTGTTCTTTCTGGCACTCATTCTCATCCCATTCTTTCATGGCCCAGCCCACCCCCCTTAGGGGTTTTGCCTCCTCATTAACACATCACCCGATCTTTGGCTCTGACACCATTTGTAAAGCCGAAGCTCCCCGCTAATAGATATTGTCCTATTTGGGTTTTTTCTTTCGGGCTTCTTCTCAAAGTTTTTAAAATGCGTCTGCTAGGGAGAGGTTTCCACACCCTTATAAAAAATGTTTCATTCTCCTCTCCAATCAAGGTGGGATCTCATAGATTCTATTACTGAAATATTTGTTTGGTGAACAAGTTTTTAATATACTATTTCATGTTACAAACTCGTTTCATTCTCCTCCCCAACCGATATGGGATTCCACCACATACATATTCAAATTGTTTTCAAATTTCTGTTTCTTGATCACCCTAAATATTTTACTCTCTTTGGCAGGCATCAAGCACACAAGAAGAATCCTCTAGGCCCAAGTTTACATGTAACTGTTCACCTATGCAAGTTAGTACTAGATATTGTAATTGTTTCTCTGTCAATATCTTTATCTTGAAACTTCCTATATAGTTCACTGCAGAGGAAGCTATTCAACGCCAGCTAGATGCACTGAGGTACAATGATCGACCCCATCAAGATTATGGAATTGAGGTCATGTACCAGGTAGTGTGCATTGTAAAGGGTCTTCATTTCTTCATATTCATTGCTTGTGTAATGACACAGTGGCCTATAAACTAAACATCTCTCAATAAACGACAGTTTGCTGGGTTCAATCCTCTTCAAAGGTCGACATATTTCGGTCCCTTCTTCGATTTGGGACAGGTATAGTGTGAAACTTCAACAATTTATATGAGCAATACTGTATCTGCTCATTCTTTTCTTGATTTGATGCATTTTTTGACAGTGCAGTTTGAAAGATTCAGACGGGTATTCCACCATTCGACGTATCGTGTATTGCTCGGCCATAAAGAGAGAAAGATCTTGAGCAGTTTGATTGTAGAGGAGGTAAAGCAGCCTCCATATTGAGCTTGATTGACTCCTATATCAAGTAGCTAACTTTTGAGTACTTTCTTTGCCAGTAAATTTATGTACTGTAAAATAATATCTTGTGGATTTACAAACTCGGAAACAGAATCGATTCAAGCAGCGGGTATGGATACGAGGTTGTCGCCCGAAGGAAGAAGAAATATTTCAATTCACTATGGTTCAGGTTAGGCTATGTCATTTTGAATTTGTTGTGATCGTTAGTAGTCTGCACAGAATGTTATATCACTATACTTTATGCTAACGGAATTCATATTATCACTAGATTGATAATTTCTAAAACTTATTGGCAGAGGGTTGGCGGCTCGTGGGATGGGTATTGGCTTACAGAAAGTGTGCTTAACGATGGAGATGCATTTAGTGGAGGCTTAGCCTACTAAGGAAAAGGATGCTTTGCTCAAATTGGGTGACTGGTTAGTAAACTTAGCATAATGTTGTTCAATTTGTATATTTGAAATGTATATCATAGGTCTGTATTATAATTTGAACCCTTGTAAGATCATAGAACTTAGAATTTGTATATATTATTTACATGGTTTCGTTCTACCTTTGACAGTCTATGTTCGTGTGCATGTGATTAGGGTGTTCTTGTACTAGTTGGGTTGGTCGAGTTTTTAACACTCCCATAAACAAATACGAAGGAATACAAAACAACCTTTTCAGTTG

mRNA sequence

TGGACCAAATAAAAAGATTAATATTTTAATTTAATCAAAATAAAAATAAAAAAAACAAATCAAAATCGGCGCCTCACCTCCCAAACGCCAATCTATCATCAGCTATCGATTTCATCAGAGACGAAGGAGAAGAAGGAAAGGAAGGGAAATAATCTTCTCCGGCGAGAGGATGTCATGTTGTTCGTCCTTATCAGCGGCTCCTACATCCATGTCTTTGATTTCAAAGCGCAAATTCACGAGATCCGTTAATAAACATGTGATCGTTTCCATGAATTCTCGCTTCAGAGCTTCTGCAGAAGTTCCTGATTTTCTTCCTGCCGATTGGCATCAAGCACACAAGAAGAATCCTCTAGGCCCAAGTTTACATTTCACTGCAGAGGAAGCTATTCAACGCCAGCTAGATGCACTGAGGTACAATGATCGACCCCATCAAGATTATGGAATTGAGGTCATGTACCAGTTTGCTGGGTTCAATCCTCTTCAAAGGTCGACATATTTCGGTCCCTTCTTCGATTTGGGACAGTTTGAAAGATTCAGACGGGTATTCCACCATTCGACGTATCGTGTATTGCTCGGCCATAAAGAGAGAAAGATCTTGAGCAGTTTGATTGTAGAGGAGAATCGATTCAAGCAGCGGGTATGGATACGAGGTTGTCGCCCGAAGGAAGAAGAAATATTTCAATTCACTATGGTTCAGAGGGTTGGCGGCTCGTGGGATGGGTATTGGCTTACAGAAAGTGTGCTTAACGATGGAGATGCATTTAGTGGAGGCTTAGCCTACTAAGGAAAAGGATGCTTTGCTCAAATTGGGTGACTGGTTAGTAAACTTAGCATAATGTTGTTCAATTTGTATATTTGAAATGTATATCATAGGTCTGTATTATAATTTGAACCCTTGTAAGATCATAGAACTTAGAATTTGTATATATTATTTACATGGTTTCGTTCTACCTTTGACAGTCTATGTTCGTGTGCATGTGATTAGGGTGTTCTTGTACTAGTTGGGTTGGTCGAGTTTTTAACACTCCCATAAACAAATACGAAGGAATACAAAACAACCTTTTCAGTTG

Coding sequence (CDS)

ATGTCATGTTGTTCGTCCTTATCAGCGGCTCCTACATCCATGTCTTTGATTTCAAAGCGCAAATTCACGAGATCCGTTAATAAACATGTGATCGTTTCCATGAATTCTCGCTTCAGAGCTTCTGCAGAAGTTCCTGATTTTCTTCCTGCCGATTGGCATCAAGCACACAAGAAGAATCCTCTAGGCCCAAGTTTACATTTCACTGCAGAGGAAGCTATTCAACGCCAGCTAGATGCACTGAGGTACAATGATCGACCCCATCAAGATTATGGAATTGAGGTCATGTACCAGTTTGCTGGGTTCAATCCTCTTCAAAGGTCGACATATTTCGGTCCCTTCTTCGATTTGGGACAGTTTGAAAGATTCAGACGGGTATTCCACCATTCGACGTATCGTGTATTGCTCGGCCATAAAGAGAGAAAGATCTTGAGCAGTTTGATTGTAGAGGAGAATCGATTCAAGCAGCGGGTATGGATACGAGGTTGTCGCCCGAAGGAAGAAGAAATATTTCAATTCACTATGGTTCAGAGGGTTGGCGGCTCGTGGGATGGGTATTGGCTTACAGAAAGTGTGCTTAACGATGGAGATGCATTTAGTGGAGGCTTAGCCTACTAA

Protein sequence

MSCCSSLSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNPLGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESVLNDGDAFSGGLAY

Homology

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BLAST of CmaCh01G014910.1 vs. TrEMBL
Match: A0A0A0LED5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G878870 PE=4 SV=1)

HSP 1 Score: 394.8 bits (1013), Expect = 6.3e-107
Identity = 189/204 (92.65%), Postives = 197/204 (96.57%), Query Frame = 1


Query: 1   MSCCSSLSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP 60
           MSCCSSLSAAP+SMSLI+ RKFT SVNK +IVSMNSRFRASAEVPDFLPADWH AHKK+P
Sbjct: 1   MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDP 60

Query: 61  LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFE 120
           +GP LHFTAEEAIQ QLDALRYNDRPHQDYGIEVMYQFAGF+PL+RSTYFGPFFDLGQFE
Sbjct: 61  IGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFE 120

Query: 121 RFRRVFHHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180
           RFRRVFHHSTYRVLLGHKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG
Sbjct: 121 RFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180

Query: 181 SWDGYWLTESVLNDGDAFSGGLAY 205
           SWDGYWLTES+LNDGDAFSGGLAY
Sbjct: 181 SWDGYWLTESLLNDGDAFSGGLAY 204

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BLAST of CmaCh01G014910.1 vs. TrEMBL
Match: M5XH49_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015477mg PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 1.7e-83
Identity = 154/204 (75.49%), Postives = 177/204 (86.76%), Query Frame = 1


Query: 1   MSCCSSLSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP 60
           MS CSSLS  P S+ L   + F+  + K   VS+ +RFRASA+VPDFL ADW ++ KK P
Sbjct: 1   MSFCSSLSY-PNSLFLSKTKPFSAHI-KPPTVSLGTRFRASADVPDFLSADWLESRKKKP 60

Query: 61  LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFE 120
            GP L+F+AEEA+Q QLDAL+YND+P QDYGIEVMY+FAGF+P +RSTYFGPFFDLGQFE
Sbjct: 61  FGPRLNFSAEEAVQHQLDALKYNDQPRQDYGIEVMYRFAGFDPFERSTYFGPFFDLGQFE 120

Query: 121 RFRRVFHHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180
           RFRR+FHHSTYRVLLGHKERK+LSSL VEENRFKQRVWIRG RP+EEEIFQFTMVQRVGG
Sbjct: 121 RFRRIFHHSTYRVLLGHKERKMLSSLFVEENRFKQRVWIRGSRPEEEEIFQFTMVQRVGG 180

Query: 181 SWDGYWLTESVLNDGDAFSGGLAY 205
           SWDGYWLTES+L+DGDAF+GGLAY
Sbjct: 181 SWDGYWLTESLLHDGDAFAGGLAY 202

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BLAST of CmaCh01G014910.1 vs. TrEMBL
Match: A0A067KMY0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07206 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 2.4e-82
Identity = 151/204 (74.02%), Postives = 177/204 (86.76%), Query Frame = 1


Query: 1   MSCCSSLSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP 60
           MS CSSLS  P S+SL+SK K     NK   V ++SR R SA+VPD+L ADW ++ +K P
Sbjct: 1   MSFCSSLSPPP-SLSLLSKSKPFNGDNKAAGVIVSSRIRGSADVPDYLSADWLESRRKRP 60

Query: 61  LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFE 120
            GP L+F+AEEA+Q QLDAL+YND+P  DYGIEVMY+FAGF+P +RSTYFGPFFDLGQFE
Sbjct: 61  FGPRLNFSAEEAVQYQLDALKYNDQPRPDYGIEVMYRFAGFDPFERSTYFGPFFDLGQFE 120

Query: 121 RFRRVFHHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180
           RFRR+FHHSTYRVLLGHKERKILSSL+V+ENRFKQRVW++G RP+EEEIFQFTMVQRVGG
Sbjct: 121 RFRRIFHHSTYRVLLGHKERKILSSLLVKENRFKQRVWVQGNRPEEEEIFQFTMVQRVGG 180

Query: 181 SWDGYWLTESVLNDGDAFSGGLAY 205
           SWDGYWLTES+LNDG+AF+GGLAY
Sbjct: 181 SWDGYWLTESLLNDGNAFAGGLAY 203

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BLAST of CmaCh01G014910.1 vs. TrEMBL
Match: B9H9R6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s26510g PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 9.2e-82
Identity = 151/204 (74.02%), Postives = 176/204 (86.27%), Query Frame = 1


Query: 1   MSCCSSLSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP 60
           MS CSS+S  P S+SL+SK   T+ +       + SRFRASA+VPDFL ADW ++ +K P
Sbjct: 1   MSFCSSIST-PQSLSLLSK---TKPIINGGDYKLGSRFRASADVPDFLSADWLESRRKKP 60

Query: 61  LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFE 120
            GP L+F+AEEA+  QLDAL+YND+P QDYGIEVMY+FAGF+P +RSTYFGPFFDLGQFE
Sbjct: 61  FGPRLNFSAEEAVNCQLDALKYNDQPRQDYGIEVMYRFAGFDPFERSTYFGPFFDLGQFE 120

Query: 121 RFRRVFHHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180
           RFRR+FHHSTYRVLLGHKERKILSSL V+ENRFKQR+WIRG RP+EEEIFQFTMVQRVGG
Sbjct: 121 RFRRIFHHSTYRVLLGHKERKILSSLFVKENRFKQRIWIRGNRPEEEEIFQFTMVQRVGG 180

Query: 181 SWDGYWLTESVLNDGDAFSGGLAY 205
           SWDGYWLTES+L+DGDAF+GGLAY
Sbjct: 181 SWDGYWLTESLLHDGDAFAGGLAY 200

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BLAST of CmaCh01G014910.1 vs. TrEMBL
Match: D7SUM3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g04730 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 2.9e-80
Identity = 151/204 (74.02%), Postives = 177/204 (86.76%), Query Frame = 1


Query: 1   MSCCSSLSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP 60
           MS CSSLS+ P S+SL SK       +K V VS++SR RASA+VPDFL ADW ++ +K P
Sbjct: 1   MSFCSSLSS-PQSISLFSKPFHG---DKPVSVSLSSRIRASADVPDFLSADWLESRRKRP 60

Query: 61  LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFE 120
            GP L+F+AEEA+Q QLDAL+YND+P QDYGIEVMY+FAGF+P +RSTYFGPFFDLGQFE
Sbjct: 61  FGPRLNFSAEEAVQYQLDALKYNDQPRQDYGIEVMYRFAGFDPFERSTYFGPFFDLGQFE 120

Query: 121 RFRRVFHHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180
           RFRR+FHHS+YRVLL H+ERKILSSL V+ENRFKQRVWIRG RP+EEEIFQFTM QRVGG
Sbjct: 121 RFRRIFHHSSYRVLLCHRERKILSSLWVKENRFKQRVWIRGTRPEEEEIFQFTMFQRVGG 180

Query: 181 SWDGYWLTESVLNDGDAFSGGLAY 205
           SWDGYWLTES+L+DGD+FSGG+AY
Sbjct: 181 SWDGYWLTESLLHDGDSFSGGVAY 200

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BLAST of CmaCh01G014910.1 vs. TAIR10
Match: AT2G25605.1 (AT2G25605.1 unknown protein)

HSP 1 Score: 280.0 bits (715), Expect = 1.1e-75
Identity = 130/198 (65.66%), Postives = 162/198 (81.82%), Query Frame = 1


Query: 7   LSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNPLGPSLH 66
           L + P+S+S   K       N +  ++ N    +S++VPDFL ADW ++ +K P GP L 
Sbjct: 8   LPSPPSSLSANVKH-----FNGYGRLNRNLVRASSSDVPDFLSADWLESRRKRPFGPRLD 67

Query: 67  FTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFERFRRVF 126
           F+AE+A++ QLDAL+YND P  DYGIEVMY+FAGF+P +RSTYFGPFFDLGQFERFRR+F
Sbjct: 68  FSAEDAVRHQLDALKYNDHPRDDYGIEVMYRFAGFDPFERSTYFGPFFDLGQFERFRRIF 127

Query: 127 HHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYW 186
           HHS+YRVLLGHK+RK+LSSL VEENRFKQR+WI+G RP+EEEIF+FTM QR+GGSWDGYW
Sbjct: 128 HHSSYRVLLGHKDRKLLSSLFVEENRFKQRIWIQGNRPEEEEIFEFTMFQRIGGSWDGYW 187

Query: 187 LTESVLNDGDAFSGGLAY 205
           LTES+L+DGD FSGG+AY
Sbjct: 188 LTESLLHDGDVFSGGMAY 200

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BLAST of CmaCh01G014910.1 vs. NCBI nr
Match: gi|778687021|ref|XP_004136341.2| (PREDICTED: uncharacterized protein LOC101205248 isoform X1 [Cucumis sativus])

HSP 1 Score: 394.8 bits (1013), Expect = 9.0e-107
Identity = 189/204 (92.65%), Postives = 197/204 (96.57%), Query Frame = 1


Query: 1   MSCCSSLSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP 60
           MSCCSSLSAAP+SMSLI+ RKFT SVNK +IVSMNSRFRASAEVPDFLPADWH AHKK+P
Sbjct: 1   MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDP 60

Query: 61  LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFE 120
           +GP LHFTAEEAIQ QLDALRYNDRPHQDYGIEVMYQFAGF+PL+RSTYFGPFFDLGQFE
Sbjct: 61  IGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFE 120

Query: 121 RFRRVFHHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180
           RFRRVFHHSTYRVLLGHKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG
Sbjct: 121 RFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180

Query: 181 SWDGYWLTESVLNDGDAFSGGLAY 205
           SWDGYWLTES+LNDGDAFSGGLAY
Sbjct: 181 SWDGYWLTESLLNDGDAFSGGLAY 204

[Close]

BLAST of CmaCh01G014910.1 vs. NCBI nr
Match: gi|659132783|ref|XP_008466381.1| (PREDICTED: uncharacterized protein LOC103503805 [Cucumis melo])

HSP 1 Score: 392.5 bits (1007), Expect = 4.5e-106
Identity = 188/204 (92.16%), Postives = 195/204 (95.59%), Query Frame = 1


Query: 1   MSCCSSLSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP 60
           MSCCSSLSAAP+SMSLI+ RKFT SVNK V VSMNSRFR SAEVPDFLPADWH AHKK+P
Sbjct: 1   MSCCSSLSAAPSSMSLITNRKFTSSVNKPVTVSMNSRFRVSAEVPDFLPADWHDAHKKDP 60

Query: 61  LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFE 120
           +GP LHFTAEEAIQ QLDALRYNDRPHQDYGIEVMYQFAGF+PL+RSTYFGPFFDLGQFE
Sbjct: 61  IGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFE 120

Query: 121 RFRRVFHHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180
           RFRRVFHHSTYRVLLGHKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG
Sbjct: 121 RFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180

Query: 181 SWDGYWLTESVLNDGDAFSGGLAY 205
           SWDGYWLTES+LNDGDAFSGGLAY
Sbjct: 181 SWDGYWLTESLLNDGDAFSGGLAY 204

[Close]

BLAST of CmaCh01G014910.1 vs. NCBI nr
Match: gi|778687024|ref|XP_011652492.1| (PREDICTED: uncharacterized protein LOC101205248 isoform X2 [Cucumis sativus])

HSP 1 Score: 335.1 bits (858), Expect = 8.5e-89
Identity = 162/176 (92.05%), Postives = 169/176 (96.02%), Query Frame = 1


Query: 1   MSCCSSLSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP 60
           MSCCSSLSAAP+SMSLI+ RKFT SVNK +IVSMNSRFRASAEVPDFLPADWH AHKK+P
Sbjct: 1   MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDP 60

Query: 61  LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFE 120
           +GP LHFTAEEAIQ QLDALRYNDRPHQDYGIEVMYQFAGF+PL+RSTYFGPFFDLGQFE
Sbjct: 61  IGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFE 120

Query: 121 RFRRVFHHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQ 177
           RFRRVFHHSTYRVLLGHKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQ
Sbjct: 121 RFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQ 176

[Close]

BLAST of CmaCh01G014910.1 vs. NCBI nr
Match: gi|645226105|ref|XP_008219885.1| (PREDICTED: uncharacterized protein LOC103320051 [Prunus mume])

HSP 1 Score: 317.4 bits (812), Expect = 1.8e-83
Identity = 155/204 (75.98%), Postives = 178/204 (87.25%), Query Frame = 1


Query: 1   MSCCSSLSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP 60
           MS CSSLS  P S+ L   + F+  + K   VS++SRFRASA+VPDFL ADW ++ KK P
Sbjct: 1   MSFCSSLSY-PNSLFLSKTKPFSVDI-KPPTVSLSSRFRASADVPDFLSADWLESRKKKP 60

Query: 61  LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFE 120
            GP L+F+AEEA+Q QLDAL+YND+P QDYGIEVMY+FAGF+P +RSTYFGPFFDLGQFE
Sbjct: 61  SGPRLNFSAEEAVQHQLDALKYNDQPRQDYGIEVMYRFAGFDPFERSTYFGPFFDLGQFE 120

Query: 121 RFRRVFHHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180
           RFRR+FHHSTYRVLLGHKERK+LSSL VEENRFKQRVWIRG RP+EEEIFQFTMVQRVGG
Sbjct: 121 RFRRIFHHSTYRVLLGHKERKMLSSLFVEENRFKQRVWIRGSRPEEEEIFQFTMVQRVGG 180

Query: 181 SWDGYWLTESVLNDGDAFSGGLAY 205
           SWDGYWLTES+L+DGDAF+GGLAY
Sbjct: 181 SWDGYWLTESLLHDGDAFAGGLAY 202

[Close]

BLAST of CmaCh01G014910.1 vs. NCBI nr
Match: gi|596222098|ref|XP_007224080.1| (hypothetical protein PRUPE_ppa015477mg [Prunus persica])

HSP 1 Score: 317.0 bits (811), Expect = 2.4e-83
Identity = 154/204 (75.49%), Postives = 177/204 (86.76%), Query Frame = 1


Query: 1   MSCCSSLSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP 60
           MS CSSLS  P S+ L   + F+  + K   VS+ +RFRASA+VPDFL ADW ++ KK P
Sbjct: 1   MSFCSSLSY-PNSLFLSKTKPFSAHI-KPPTVSLGTRFRASADVPDFLSADWLESRKKKP 60

Query: 61  LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFE 120
            GP L+F+AEEA+Q QLDAL+YND+P QDYGIEVMY+FAGF+P +RSTYFGPFFDLGQFE
Sbjct: 61  FGPRLNFSAEEAVQHQLDALKYNDQPRQDYGIEVMYRFAGFDPFERSTYFGPFFDLGQFE 120

Query: 121 RFRRVFHHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180
           RFRR+FHHSTYRVLLGHKERK+LSSL VEENRFKQRVWIRG RP+EEEIFQFTMVQRVGG
Sbjct: 121 RFRRIFHHSTYRVLLGHKERKMLSSLFVEENRFKQRVWIRGSRPEEEEIFQFTMVQRVGG 180

Query: 181 SWDGYWLTESVLNDGDAFSGGLAY 205
           SWDGYWLTES+L+DGDAF+GGLAY
Sbjct: 181 SWDGYWLTESLLHDGDAFAGGLAY 202

The following BLAST results are available for this feature:

BLAST of CmaCh01G014910.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh01G014910.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LED5_CUCSA	6.3e-107	92.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G878870 PE=4 SV=1	[more]
M5XH49_PRUPE	1.7e-83	75.49	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015477mg PE=4 SV=1	[more]
A0A067KMY0_JATCU	2.4e-82	74.02	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07206 PE=4 SV=1	[more]
B9H9R6_POPTR	9.2e-82	74.02	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s26510g PE=4 SV=1	[more]
D7SUM3_VITVI	2.9e-80	74.02	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g04730 PE=4 SV=...	[more]

BLAST of CmaCh01G014910.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G25605.1	1.1e-75	65.66	unknown protein	[more]

BLAST of CmaCh01G014910.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778687021\|ref\|XP_004136341.2\|	9.0e-107	92.65	PREDICTED: uncharacterized protein LOC101205248 isoform X1 [Cucumis sativus]	[more]
gi\|659132783\|ref\|XP_008466381.1\|	4.5e-106	92.16	PREDICTED: uncharacterized protein LOC103503805 [Cucumis melo]	[more]
gi\|778687024\|ref\|XP_011652492.1\|	8.5e-89	92.05	PREDICTED: uncharacterized protein LOC101205248 isoform X2 [Cucumis sativus]	[more]
gi\|645226105\|ref\|XP_008219885.1\|	1.8e-83	75.98	PREDICTED: uncharacterized protein LOC103320051 [Prunus mume]	[more]
gi\|596222098\|ref\|XP_007224080.1\|	2.4e-83	75.49	hypothetical protein PRUPE_ppa015477mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003899	DNA-directed RNA polymerase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh01G014910	CmaCh01G014910	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh01G014910.1	CmaCh01G014910.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh01G014910.1.three_prime_UTR.1	CmaCh01G014910.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh01G014910.1.CDS.7	CmaCh01G014910.1.CDS.7	CDS
CmaCh01G014910.1.CDS.6	CmaCh01G014910.1.CDS.6	CDS
CmaCh01G014910.1.CDS.5	CmaCh01G014910.1.CDS.5	CDS
CmaCh01G014910.1.CDS.4	CmaCh01G014910.1.CDS.4	CDS
CmaCh01G014910.1.CDS.3	CmaCh01G014910.1.CDS.3	CDS
CmaCh01G014910.1.CDS.2	CmaCh01G014910.1.CDS.2	CDS
CmaCh01G014910.1.CDS.1	CmaCh01G014910.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh01G014910.1.five_prime_UTR.1	CmaCh01G014910.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh01G014910.1.exon.7	CmaCh01G014910.1.exon.7	exon
CmaCh01G014910.1.exon.6	CmaCh01G014910.1.exon.6	exon
CmaCh01G014910.1.exon.5	CmaCh01G014910.1.exon.5	exon
CmaCh01G014910.1.exon.4	CmaCh01G014910.1.exon.4	exon
CmaCh01G014910.1.exon.3	CmaCh01G014910.1.exon.3	exon
CmaCh01G014910.1.exon.2	CmaCh01G014910.1.exon.2	exon
CmaCh01G014910.1.exon.1	CmaCh01G014910.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35716	FAMILY NOT NAMED	coord: 34..204 score: 2.9