CmaCh12G010340 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCCTCGTCGTTACACTTCAGCCTCTCTTCTCAATTCCCCACAAATCCTTCGCCAAATTCCCAAAACCCTTCCGCTTCCATAGATTCAGGCCAGTCACCAATAGCATGGCGGACTCATCAAAGCCGGTGACCGGAGAGAATTACCCGGTACCACTCTCGCCTCCATTGCCGGCGATTTCCAAGAACTTGGAGCTCGCTAGAGCCATGGCTGCCTGCTCTAAATCCAGCCTATTTTCTTTGTCAGCTTGCGATGTTATATACGAGGATGAGTGGCTCATTGCTGTCAATAAGACTCAAGGGGTATACTGTGAAAGCGTTTTGGGCTCTGTTCCTCGTTTTCTCGGCGATTCGGCTATGGCTGGTGCGCAGAGTGGAGGTACTAGAATTCTCTGCCTATGTTAACTCTTTGCTAGAATTTTTTTGAGACAGATTTAGATTTTAACATGAGCTTGGCAAGTTGAATTCAATTTTACTCAAATTTTCGTATTTGATAATCGATTGGAATGGTGTAAGTGCAACTTTTGATTTGCTTTCGTTTGAAGAATTGTAAAATGATATTAGAATGTGCTTTCAATGGATTTTCAAATATGGACGAAGCTGCAAAGAATGAAGATATAAGTGTTGAATTGTTCTTAAAGATAGTTTTGAAAGATTTATTCCATACAGATCTCGGGCATTGATTTCTTTAAACTTTTGTGCATTAATATTGTTGAAATTGGGTGAAATTAATAGATAAATGTAATGGAAGTCTAACAAATTGTATCAATGAACTGTTTTCTGGAATTTGTATTCATTGTTTTAAGCTGTTTAAGAACGAAATCTCTGAAATTCTCATCCCTTTTGTATTTTTCATGAAAAGTTGTCGTCTAATGGTTTTTAAGGAGAGAGAGAAAATGTAACGACTCAAGCCCGCTAAAAGATATGGCCGTCTTTGGGCTTCCCTTCAAGGGTTTTAAAACGCGTATGCTAGGGAGAGGTTTCTACACCTTATAAGGGTGTTTCGTTCTCCTCCCCAACTGATATGGGATCTCACAATCCACCCCTCTTCAGGCCCTAGCGTCTTCTCTGGCACTCGTTTTCTTCTCCAATCGATGTGGGACCCCCCAAATCCACCCCCTTTAGGTCTAGCATCCTTGCTAGCACACCGCCTCGTGTCCACCTCCCTTCGGTGACTCAACTTTCTCGTTGGCACATCGTCCGGTGCTGCCTCTAATACTATTTGTAACTGCCCAAGCCCACAACTAGCATATATTATCCTCTTTGAGCTTTCCCTCAAAGTTTTTAAAACGCGTCTGATAGGGAGAGGGTTTCACACCCTTGTAAAAGGTGTTTCGTTCTCCTCCTTAACCAACGTGGGATCTCACATAAAAACCTAAAACAAACCTATGTTTTTTCAACTAAATTGTCAAATAAGCCTTTAGTTTATCTCATCAAATTATGTCAGTAAAGTTGTCTGGGAGTTTGATATGTGTACATTTACTTAAGATTTGTGTAATTGTTTGGTGCTTCTTTCCCTACATTGCCAAAAATAGCAATGTTTCTGATCATTAGACAGTCGATATAAATGGTTTAGCTATATCCTGGTTGTTGAAGAGAGATCTGCTTGAATGTATCTGAAGTATTAAACTTTTGTCTAAAATGATATCATGTAATCTTTCGATTATTCTATCACTTTCGATTTATCGGATTGTCCTCTGCCCGGATTCTTTATATGCAGAGATCAAAATCAGTCTGCCAGAGCTTCATCTTGCCAATCGTCTCGATCGTGACACAAGCGGAGTGATGGTTATAACGAAGTCGCATAAAGTTGCTTCTAAATTAGTGAAGGCATTTACTGACCACAAGGTTTCAAAATCATATATTGCCTTCTGCGTTGGTTCGGCTCCAAAATGGAAAAAAATCATTGTCAAATCTGGTCATGGAAGGTCAAAGTTCGGAGTCTGGCGTGTCTATGCTGCAGCTGATGTGGGTCGCTCCTTACCGGGCGGTTCGGTAGTCCGAGACATGGAAACCTCTTTTGAAGTATTGTCTGTAAATGGGCAAAGCACCAAAGAGGAACTTCCAGAATCTAGAAAAGATGAAGAAGAAGAAGAAGAAACAATTGTAGCCCAATCAAAATCTCTGATAGATATCGATGCTCGGAAGGACGAGATATTGATTCGAGCACGACCTCGGAGTGGAAGGACTCATCAAATCCGTCTTCACTCCCAATATCTTGGAATTCCTATTGTAGGAGATGTGAAATATGAAGGTGTTACGGAGTGGAATGGAAAAATTTATGATAGCCATGAGCTTCATGCTGAAAGCTTGTATTTTGTGCACCCTATTACAGGCATTCCTCTCAAACTGCAAGCTCCTCTGCCATCATGGGCCACCCAAGCATTGCAGCCCCAACAGCAAGAAATGAATTCTGCAGCATCCTTGAAACCTATGCCTTAACATTATCACTGGCACTGTTATACGATGAGTCTCAGTGTCGAAGAATGTCGGGAAGCGGTTAGTATTCAATCTAATTCGTACAAGTTGAACTACAGAGTTTTCGTATCACTGACTTCCTGTCTGCATTTTCCTCGACAGGTGCTCGTTGAATCAGACGTTAGATGAGCTCTTGAGAGCACAACAGTCTCCTCTAGAATATCAGCAAAGTCGGGAACGAACAACTTGCTGAGTTTCTTCTCAAAAATCGAAAGGATGGGATGCTCGTAGCCGATTCTGGACATGAAAGAAGAAGCATGGCATGTCTAAGGCGGTCGAGGTTCTTCAAAGCACCCTCGGAAACTTTCCCCTTCCCTATATTTGTGCAATTATATGATAAATCGTTTAGAAATCGAATGTCTTTATAAAAATATAGATTGAATTGTTATATAATAGAATCGTATCGATATTTCACCTCGATGATTGTCCTTCCATCACAACCAGAAGTTGCAATAGATTTGAATAACTGTGTACAAGTGGACAATAAATTAGACATGAATGAACCTTAAATGCTAAGGAAAGGAAGTTGTTGAAGGAAGTCATTGAACCTTCAGTTTTTTTTA ATGGCCCTCGTCGTTACACTTCAGCCTCTCTTCTCAATTCCCCACAAATCCTTCGCCAAATTCCCAAAACCCTTCCGCTTCCATAGATTCAGGCCAGTCACCAATAGCATGGCGGACTCATCAAAGCCGGTGACCGGAGAGAATTACCCGGTACCACTCTCGCCTCCATTGCCGGCGATTTCCAAGAACTTGGAGCTCGCTAGAGCCATGGCTGCCTGCTCTAAATCCAGCCTATTTTCTTTGTCAGCTTGCGATGTTATATACGAGGATGAGTGGCTCATTGCTGTCAATAAGACTCAAGGGGTATACTGTGAAAGCGTTTTGGGCTCTGTTCCTCGTTTTCTCGGCGATTCGGCTATGGCTGGTGCGCAGAGTGGAGAGATCAAAATCAGTCTGCCAGAGCTTCATCTTGCCAATCGTCTCGATCGTGACACAAGCGGAGTGATGGTTATAACGAAGTCGCATAAAGTTGCTTCTAAATTAGTGAAGGCATTTACTGACCACAAGGTTTCAAAATCATATATTGCCTTCTGCGTTGGTTCGGCTCCAAAATGGAAAAAAATCATTGTCAAATCTGGTCATGGAAGGTCAAAGTTCGGAGTCTGGCGTGTCTATGCTGCAGCTGATGTGGGTCGCTCCTTACCGGGCGGTTCGGTAGTCCGAGACATGGAAACCTCTTTTGAAGTATTGTCTGTAAATGGGCAAAGCACCAAAGAGGAACTTCCAGAATCTAGAAAAGATGAAGAAGAAGAAGAAGAAACAATTGTAGCCCAATCAAAATCTCTGATAGATATCGATGCTCGGAAGGACGAGATATTGATTCGAGCACGACCTCGGAGTGGAAGGACTCATCAAATCCGTCTTCACTCCCAATATCTTGGAATTCCTATTGTAGGAGATGTGAAATATGAAGGTGTTACGGAGTGGAATGGAAAAATTTATGATAGCCATGAGCTTCATGCTGAAAGCTTGTATTTTGTGCACCCTATTACAGGCATTCCTCTCAAACTGCAAGCTCCTCTGCCATCATGGGCCACCCAAGCATTGCAGCCCCAACAGCAAGAAATGAATTCTGCAGCATCCTTGAAACCTATGCCTTAACATTATCACTGGCACTGTTATACGATGAGTCTCAGTGTCGAAGAATGTCGGGAAGCGGTGCTCGTTGAATCAGACGTTAGATGAGCTCTTGAGAGCACAACAGTCTCCTCTAGAATATCAGCAAAGTCGGGAACGAACAACTTGCTGAGTTTCTTCTCAAAAATCGAAAGGATGGGATGCTCGTAGCCGATTCTGGACATGAAAGAAGAAGCATGGCATGTCTAAGGCGGTCGAGGTTCTTCAAAGCACCCTCGGAAACTTTCCCCTTCCCTATATTTGTGCAATTATATGATAAATCGTTTAGAAATCGAATGTCTTTATAAAAATATAGATTGAATTGTTATATAATAGAATCGTATCGATATTTCACCTCGATGATTGTCCTTCCATCACAACCAGAAGTTGCAATAGATTTGAATAACTGTGTACAAGTGGACAATAAATTAGACATGAATGAACCTTAAATGCTAAGGAAAGGAAGTTGTTGAAGGAAGTCATTGAACCTTCAGTTTTTTTTA ATGGCCCTCGTCGTTACACTTCAGCCTCTCTTCTCAATTCCCCACAAATCCTTCGCCAAATTCCCAAAACCCTTCCGCTTCCATAGATTCAGGCCAGTCACCAATAGCATGGCGGACTCATCAAAGCCGGTGACCGGAGAGAATTACCCGGTACCACTCTCGCCTCCATTGCCGGCGATTTCCAAGAACTTGGAGCTCGCTAGAGCCATGGCTGCCTGCTCTAAATCCAGCCTATTTTCTTTGTCAGCTTGCGATGTTATATACGAGGATGAGTGGCTCATTGCTGTCAATAAGACTCAAGGGGTATACTGTGAAAGCGTTTTGGGCTCTGTTCCTCGTTTTCTCGGCGATTCGGCTATGGCTGGTGCGCAGAGTGGAGAGATCAAAATCAGTCTGCCAGAGCTTCATCTTGCCAATCGTCTCGATCGTGACACAAGCGGAGTGATGGTTATAACGAAGTCGCATAAAGTTGCTTCTAAATTAGTGAAGGCATTTACTGACCACAAGGTTTCAAAATCATATATTGCCTTCTGCGTTGGTTCGGCTCCAAAATGGAAAAAAATCATTGTCAAATCTGGTCATGGAAGGTCAAAGTTCGGAGTCTGGCGTGTCTATGCTGCAGCTGATGTGGGTCGCTCCTTACCGGGCGGTTCGGTAGTCCGAGACATGGAAACCTCTTTTGAAGTATTGTCTGTAAATGGGCAAAGCACCAAAGAGGAACTTCCAGAATCTAGAAAAGATGAAGAAGAAGAAGAAGAAACAATTGTAGCCCAATCAAAATCTCTGATAGATATCGATGCTCGGAAGGACGAGATATTGATTCGAGCACGACCTCGGAGTGGAAGGACTCATCAAATCCGTCTTCACTCCCAATATCTTGGAATTCCTATTGTAGGAGATGTGAAATATGAAGGTGTTACGGAGTGGAATGGAAAAATTTATGATAGCCATGAGCTTCATGCTGAAAGCTTGTATTTTGTGCACCCTATTACAGGCATTCCTCTCAAACTGCAAGCTCCTCTGCCATCATGGGCCACCCAAGCATTGCAGCCCCAACAGCAAGAAATGAATTCTGCAGCATCCTTGAAACCTATGCCTTAA MALVVTLQPLFSIPHKSFAKFPKPFRFHRFRPVTNSMADSSKPVTGENYPVPLSPPLPAISKNLELARAMAACSKSSLFSLSACDVIYEDEWLIAVNKTQGVYCESVLGSVPRFLGDSAMAGAQSGEIKISLPELHLANRLDRDTSGVMVITKSHKVASKLVKAFTDHKVSKSYIAFCVGSAPKWKKIIVKSGHGRSKFGVWRVYAAADVGRSLPGGSVVRDMETSFEVLSVNGQSTKEELPESRKDEEEEEETIVAQSKSLIDIDARKDEILIRARPRSGRTHQIRLHSQYLGIPIVGDVKYEGVTEWNGKIYDSHELHAESLYFVHPITGIPLKLQAPLPSWATQALQPQQQEMNSAASLKPMP
BLAST of CmaCh12G010340 vs. Swiss-Prot
Match: PUS1_ARATH (RNA pseudouridine synthase 1 OS=Arabidopsis thaliana GN=At1g56345 PE=2 SV=1) HSP 1 Score: 345.5 bits (885), Expect = 7.1e-94 Identity = 180/300 (60.00%), Postives = 220/300 (73.33%), Query Frame = 1
BLAST of CmaCh12G010340 vs. Swiss-Prot
Match: PUS1_ORYSJ (RNA pseudouridine synthase 1 OS=Oryza sativa subsp. japonica GN=Os12g0560500 PE=2 SV=1) HSP 1 Score: 340.9 bits (873), Expect = 1.7e-92 Identity = 180/309 (58.25%), Postives = 220/309 (71.20%), Query Frame = 1
BLAST of CmaCh12G010340 vs. Swiss-Prot
Match: RLUC_RICTY (Ribosomal large subunit pseudouridine synthase C OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN=rluC PE=3 SV=1) HSP 1 Score: 80.5 bits (197), Expect = 4.2e-14 Identity = 76/268 (28.36%), Postives = 122/268 (45.52%), Query Frame = 1
BLAST of CmaCh12G010340 vs. Swiss-Prot
Match: RLUD_XANAC (Ribosomal large subunit pseudouridine synthase D OS=Xanthomonas axonopodis pv. citri (strain 306) GN=rluD PE=3 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 2.1e-13 Identity = 70/287 (24.39%), Postives = 126/287 (43.90%), Query Frame = 1
BLAST of CmaCh12G010340 vs. Swiss-Prot
Match: RLUD_VIBPA (Ribosomal large subunit pseudouridine synthase D OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=rluD PE=3 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 8.0e-13 Identity = 79/294 (26.87%), Postives = 116/294 (39.46%), Query Frame = 1
BLAST of CmaCh12G010340 vs. TrEMBL
Match: A0A0A0LJY6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G033960 PE=4 SV=1) HSP 1 Score: 567.8 bits (1462), Expect = 9.7e-159 Identity = 298/374 (79.68%), Postives = 322/374 (86.10%), Query Frame = 1
BLAST of CmaCh12G010340 vs. TrEMBL
Match: M5VZ97_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008866mg PE=4 SV=1) HSP 1 Score: 449.9 bits (1156), Expect = 3.0e-123 Identity = 225/307 (73.29%), Postives = 260/307 (84.69%), Query Frame = 1
BLAST of CmaCh12G010340 vs. TrEMBL
Match: A0A061F4Q6_THECC (Pseudouridine synthase family protein isoform 1 OS=Theobroma cacao GN=TCM_026756 PE=4 SV=1) HSP 1 Score: 448.0 bits (1151), Expect = 1.1e-122 Identity = 228/351 (64.96%), Postives = 274/351 (78.06%), Query Frame = 1
BLAST of CmaCh12G010340 vs. TrEMBL
Match: A0A061F426_THECC (Pseudouridine synthase family protein isoform 2 OS=Theobroma cacao GN=TCM_026756 PE=4 SV=1) HSP 1 Score: 441.4 bits (1134), Expect = 1.1e-120 Identity = 216/312 (69.23%), Postives = 259/312 (83.01%), Query Frame = 1
BLAST of CmaCh12G010340 vs. TrEMBL
Match: A0A067GSR2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018524mg PE=4 SV=1) HSP 1 Score: 441.0 bits (1133), Expect = 1.4e-120 Identity = 231/348 (66.38%), Postives = 267/348 (76.72%), Query Frame = 1
BLAST of CmaCh12G010340 vs. TAIR10
Match: AT1G56345.1 (AT1G56345.1 Pseudouridine synthase family protein) HSP 1 Score: 345.5 bits (885), Expect = 4.0e-95 Identity = 180/300 (60.00%), Postives = 220/300 (73.33%), Query Frame = 1
BLAST of CmaCh12G010340 vs. TAIR10
Match: AT1G76050.2 (AT1G76050.2 Pseudouridine synthase family protein) HSP 1 Score: 53.1 bits (126), Expect = 4.1e-07 Identity = 35/106 (33.02%), Postives = 47/106 (44.34%), Query Frame = 1
BLAST of CmaCh12G010340 vs. NCBI nr
Match: gi|700205873|gb|KGN60992.1| (hypothetical protein Csa_2G033960 [Cucumis sativus]) HSP 1 Score: 567.8 bits (1462), Expect = 1.4e-158 Identity = 298/374 (79.68%), Postives = 322/374 (86.10%), Query Frame = 1
BLAST of CmaCh12G010340 vs. NCBI nr
Match: gi|659070151|ref|XP_008453651.1| (PREDICTED: RNA pseudouridine synthase 1 [Cucumis melo]) HSP 1 Score: 536.6 bits (1381), Expect = 3.5e-149 Identity = 279/336 (83.04%), Postives = 298/336 (88.69%), Query Frame = 1
BLAST of CmaCh12G010340 vs. NCBI nr
Match: gi|778667027|ref|XP_004144814.2| (PREDICTED: RNA pseudouridine synthase 1 [Cucumis sativus]) HSP 1 Score: 532.3 bits (1370), Expect = 6.5e-148 Identity = 277/336 (82.44%), Postives = 295/336 (87.80%), Query Frame = 1
BLAST of CmaCh12G010340 vs. NCBI nr
Match: gi|595826525|ref|XP_007205588.1| (hypothetical protein PRUPE_ppa008866mg [Prunus persica]) HSP 1 Score: 449.9 bits (1156), Expect = 4.3e-123 Identity = 225/307 (73.29%), Postives = 260/307 (84.69%), Query Frame = 1
BLAST of CmaCh12G010340 vs. NCBI nr
Match: gi|590644653|ref|XP_007031140.1| (Pseudouridine synthase family protein isoform 1 [Theobroma cacao]) HSP 1 Score: 448.0 bits (1151), Expect = 1.6e-122 Identity = 228/351 (64.96%), Postives = 274/351 (78.06%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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