CmaCh01G014220 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh01G014220
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionDNA-directed RNA polymerase
LocationCma_Chr01 : 10020043 .. 10020654 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGAACCCTTTTTTTGTAATTCCTATGATGCAATTGGAGCTTATCGCCAGAAAAGAATCAATTTAGATAGTCCTTTGTGGCTCCGTTGGCGACTAGATCAACGCATTATTGCTTCAAGAGAAGCTCCTATCGAAGTTCACTATGAATTTTTGGGTACCCATCATGAGATTTACAGGTACTATCTAATAGTCAAAAGTATAAAAAAAGAAATTCTTTGTATATACATTCGAACCACTGTTGGGTTATATTATGAACTCTATTCAAAGTGTTTGAATCCAAAATCTAAAATTTTAAATAAGTTCAAAAGATTATTCGTCTAAGCGAGATGTTCGGTTATCTTTTTTTTAACATTATTGCACTAAATCACCATTACATTGTTGGAAGGTTGAGGGAAACGGCAAAACATAAGATTTTGATATTTTGAGGTAAGAAGAGTGAGGGAGTGCCGACAGCCGACAGCCGACGTAGACGACACCGACAGCTTTTTTGGGAGACACAAAATCCACACTTTGTTACAATGTTTGTTTTTGGTGTATCATCATCATCTCTTCTCTTCTTCCCAAACAATTCAAATCAAAATCCAACCCAAAATTAATGGATCCCTTTAA

mRNA sequence

ATGAAAGAACCCTTTTTTTGTAATTCCTATGATGCAATTGGAGCTTATCGCCAGAAAAGAATCAATTTAGATAGTCCTTTGTGGCTCCGTTGGCGACTAGATCAACGCATTATTGCTTCAAGAGAAGCTCCTATCGAAGTTCACTATGAATTTTTGGGTACCCATCATGAGATTTACAGAGTGAGGGAGTGCCGACAGCCGACAGCCGACGTAGACGACACCGACAGCTTTTTTGGGAGACACAAAATCCACACTTTGTTACAATGTTTGTTTTTGGTGTATCATCATCATCTCTTCTCTTCTTCCCAAACAATTCAAATCAAAATCCAACCCAAAATTAATGGATCCCTTTAA

Coding sequence (CDS)

ATGAAAGAACCCTTTTTTTGTAATTCCTATGATGCAATTGGAGCTTATCGCCAGAAAAGAATCAATTTAGATAGTCCTTTGTGGCTCCGTTGGCGACTAGATCAACGCATTATTGCTTCAAGAGAAGCTCCTATCGAAGTTCACTATGAATTTTTGGGTACCCATCATGAGATTTACAGAGTGAGGGAGTGCCGACAGCCGACAGCCGACGTAGACGACACCGACAGCTTTTTTGGGAGACACAAAATCCACACTTTGTTACAATGTTTGTTTTTGGTGTATCATCATCATCTCTTCTCTTCTTCCCAAACAATTCAAATCAAAATCCAACCCAAAATTAATGGATCCCTTTAA

Protein sequence

MKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRIIASREAPIEVHYEFLGTHHEIYRVRECRQPTADVDDTDSFFGRHKIHTLLQCLFLVYHHHLFSSSQTIQIKIQPKINGSL
Homology
[Close]
BLAST of CmaCh01G014220 vs. Swiss-Prot
Match: RPOC1_CUCSA (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus GN=rpoC1 PE=3 SV=3)

HSP 1 Score: 127.1 bits (318), Expect = 1.3e-28
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 1 

Query: 2   KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRIIASREAPIEVHYEFLGTHHEIY 60
           KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQR+IASREAPIEVHYE LGTHHEIY
Sbjct: 577 KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIY 634

[Close]
BLAST of CmaCh01G014220 vs. Swiss-Prot
Match: RPOC1_EUCGG (DNA-directed RNA polymerase subunit beta' OS=Eucalyptus globulus subsp. globulus GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 123.2 bits (308), Expect = 1.8e-27
Identity = 54/58 (93.10%), Postives = 56/58 (96.55%), Query Frame = 1 

Query: 2   KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRIIASREAPIEVHYEFLGTHHEIY 60
           KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRIIASRE PIE+HYE LGT+HEIY
Sbjct: 579 KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRIIASREVPIEIHYESLGTYHEIY 636

[Close]
BLAST of CmaCh01G014220 vs. Swiss-Prot
Match: RPOC1_FAGEA (DNA-directed RNA polymerase subunit beta' OS=Fagopyrum esculentum subsp. ancestrale GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.8e-27
Identity = 53/59 (89.83%), Postives = 57/59 (96.61%), Query Frame = 1 

Query: 1   MKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRIIASREAPIEVHYEFLGTHHEIY 60
           MKEPFFCNSYDAIGAYRQKRINLDSPLWLRW+LD R++ASREAPIEVHYE LGT+HEIY
Sbjct: 572 MKEPFFCNSYDAIGAYRQKRINLDSPLWLRWQLDHRVVASREAPIEVHYESLGTYHEIY 630

[Close]
BLAST of CmaCh01G014220 vs. Swiss-Prot
Match: RPOC1_CARPA (DNA-directed RNA polymerase subunit beta' OS=Carica papaya GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.8e-27
Identity = 54/58 (93.10%), Postives = 57/58 (98.28%), Query Frame = 1 

Query: 2   KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRIIASREAPIEVHYEFLGTHHEIY 60
           KEPFFCNSYDAIGAYRQKRINLDSPLWLRW+LDQR+IASREAPIEVHYE LGT+HEIY
Sbjct: 577 KEPFFCNSYDAIGAYRQKRINLDSPLWLRWQLDQRVIASREAPIEVHYESLGTYHEIY 634

[Close]
BLAST of CmaCh01G014220 vs. Swiss-Prot
Match: RPOC1_SILLA (DNA-directed RNA polymerase subunit beta' OS=Silene latifolia GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 3.1e-27
Identity = 54/59 (91.53%), Postives = 57/59 (96.61%), Query Frame = 1 

Query: 1   MKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRIIASREAPIEVHYEFLGTHHEIY 60
           M+EPFFCNSYDAIGAY QKRINLDSPLWLRWRLDQRIIASREAP+EVHYE LGT+HEIY
Sbjct: 579 MEEPFFCNSYDAIGAYCQKRINLDSPLWLRWRLDQRIIASREAPVEVHYESLGTYHEIY 637

[Close]
BLAST of CmaCh01G014220 vs. TrEMBL
Match: X2F7V3_LAGSI (DNA-directed RNA polymerase subunit OS=Lagenaria siceraria GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-26
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 1 

Query: 2   KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRIIASREAPIEVHYEFLGTHHEIY 60
           KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQR+IASREAPIEVHYE LGTHHEIY
Sbjct: 577 KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIY 634

[Close]
BLAST of CmaCh01G014220 vs. TrEMBL
Match: W8E6U8_9ROSI (DNA-directed RNA polymerase subunit OS=Cucumis hystrix GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-26
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 1 

Query: 2   KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRIIASREAPIEVHYEFLGTHHEIY 60
           KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQR+IASREAPIEVHYE LGTHHEIY
Sbjct: 578 KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIY 635

[Close]
BLAST of CmaCh01G014220 vs. TrEMBL
Match: G3ETX6_CUCME (DNA-directed RNA polymerase subunit OS=Cucumis melo subsp. melo GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-26
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 1 

Query: 2   KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRIIASREAPIEVHYEFLGTHHEIY 60
           KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQR+IASREAPIEVHYE LGTHHEIY
Sbjct: 577 KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIY 634

[Close]
BLAST of CmaCh01G014220 vs. TrEMBL
Match: A0A0G2QX55_9CARY (DNA-directed RNA polymerase subunit OS=Salicornia brachiata GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.1e-26
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 1 

Query: 1   MKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRIIASREAPIEVHYEFLGTHHEIY 60
           MKEPFFCNSYDAIGAYRQKRINLDSPLWLRW+LDQRIIASREAPIEVHYE LGT+HEIY
Sbjct: 574 MKEPFFCNSYDAIGAYRQKRINLDSPLWLRWQLDQRIIASREAPIEVHYESLGTYHEIY 632

[Close]
BLAST of CmaCh01G014220 vs. TrEMBL
Match: A0A0K0K865_9CARY (DNA-directed RNA polymerase subunit OS=Haloxylon ammodendron GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.1e-26
Identity = 56/59 (94.92%), Postives = 57/59 (96.61%), Query Frame = 1 

Query: 1   MKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRIIASREAPIEVHYEFLGTHHEIY 60
           MKEPFFCNSYD IGAYRQKRINLDSPLWLRWRLDQRIIASREAPIEVHYE LGT+HEIY
Sbjct: 576 MKEPFFCNSYDVIGAYRQKRINLDSPLWLRWRLDQRIIASREAPIEVHYESLGTYHEIY 634

[Close]
BLAST of CmaCh01G014220 vs. TAIR10
Match: ATCG00180.1 (ATCG00180.1 DNA-directed RNA polymerase family protein)

HSP 1 Score: 117.1 bits (292), Expect = 7.4e-27
Identity = 50/58 (86.21%), Postives = 54/58 (93.10%), Query Frame = 1 

Query: 2   KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRIIASREAPIEVHYEFLGTHHEIY 60
           KEPFFCNSYDAIGAYRQK+INLDSPLWLRW+LDQR+IASRE PIEVHYE  G +HEIY
Sbjct: 577 KEPFFCNSYDAIGAYRQKKINLDSPLWLRWQLDQRVIASREVPIEVHYESFGNYHEIY 634

[Close]
BLAST of CmaCh01G014220 vs. NCBI nr
Match: gi|74027092|gb|AAZ94642.1| (RNA polymerase beta I subunit [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 2.0e-26
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 1 

Query: 2   KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRIIASREAPIEVHYEFLGTHHEIY 60
           KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQR+IASREAPIEVHYE LGTHHEIY
Sbjct: 584 KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIY 641

[Close]
BLAST of CmaCh01G014220 vs. NCBI nr
Match: gi|590000406|ref|YP_009004035.1| (RNA polymerase beta [Cucumis hystrix])

HSP 1 Score: 127.1 bits (318), Expect = 2.0e-26
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 1 

Query: 2   KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRIIASREAPIEVHYEFLGTHHEIY 60
           KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQR+IASREAPIEVHYE LGTHHEIY
Sbjct: 578 KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIY 635

[Close]
BLAST of CmaCh01G014220 vs. NCBI nr
Match: gi|595645217|gb|AHM88680.1| (RNA polymerase beta (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 127.1 bits (318), Expect = 2.0e-26
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 1 

Query: 2   KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRIIASREAPIEVHYEFLGTHHEIY 60
           KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQR+IASREAPIEVHYE LGTHHEIY
Sbjct: 577 KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIY 634

[Close]
BLAST of CmaCh01G014220 vs. NCBI nr
Match: gi|67511389|emb|CAJ00749.1| (RNA polymerase beta chain (chloroplast) [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 2.0e-26
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 1 

Query: 2   KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRIIASREAPIEVHYEFLGTHHEIY 60
           KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQR+IASREAPIEVHYE LGTHHEIY
Sbjct: 584 KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIY 641

[Close]
BLAST of CmaCh01G014220 vs. NCBI nr
Match: gi|346578182|ref|YP_004841774.1| (RNA polymerase beta [Cucumis melo subsp. melo])

HSP 1 Score: 127.1 bits (318), Expect = 2.0e-26
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 1 

Query: 2   KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRIIASREAPIEVHYEFLGTHHEIY 60
           KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQR+IASREAPIEVHYE LGTHHEIY
Sbjct: 577 KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIY 634

The following BLAST results are available for this feature:
BLAST of CmaCh01G014220 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RPOC1_CUCSA1.3e-2896.55DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus GN=rpoC1 PE=3 SV=3[more]
RPOC1_EUCGG1.8e-2793.10DNA-directed RNA polymerase subunit beta' OS=Eucalyptus globulus subsp. globulus... [more]
RPOC1_FAGEA1.8e-2789.83DNA-directed RNA polymerase subunit beta' OS=Fagopyrum esculentum subsp. ancestr... [more]
RPOC1_CARPA1.8e-2793.10DNA-directed RNA polymerase subunit beta' OS=Carica papaya GN=rpoC1 PE=3 SV=1[more]
RPOC1_SILLA3.1e-2791.53DNA-directed RNA polymerase subunit beta' OS=Silene latifolia GN=rpoC1 PE=3 SV=1[more]
BLAST of CmaCh01G014220 vs. TrEMBL
Match NameE-valueIdentityDescription
X2F7V3_LAGSI1.4e-2696.55DNA-directed RNA polymerase subunit OS=Lagenaria siceraria GN=rpoC1 PE=3 SV=1[more]
W8E6U8_9ROSI1.4e-2696.55DNA-directed RNA polymerase subunit OS=Cucumis hystrix GN=rpoC1 PE=3 SV=1[more]
G3ETX6_CUCME1.4e-2696.55DNA-directed RNA polymerase subunit OS=Cucumis melo subsp. melo GN=rpoC1 PE=3 SV... [more]
A0A0G2QX55_9CARY3.1e-2694.92DNA-directed RNA polymerase subunit OS=Salicornia brachiata GN=rpoC1 PE=3 SV=1[more]
A0A0K0K865_9CARY3.1e-2694.92DNA-directed RNA polymerase subunit OS=Haloxylon ammodendron GN=rpoC1 PE=3 SV=1[more]
BLAST of CmaCh01G014220 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00180.17.4e-2786.21ATCG00180.1 DNA-directed RNA polymerase family protein[more]
BLAST of CmaCh01G014220 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|74027092|gb|AAZ94642.1|2.0e-2696.55RNA polymerase beta I subunit [Cucumis sativus][more]
gi|590000406|ref|YP_009004035.1|2.0e-2696.55RNA polymerase beta [Cucumis hystrix][more]
gi|595645217|gb|AHM88680.1|2.0e-2696.55RNA polymerase beta (chloroplast) [Lagenaria siceraria][more]
gi|67511389|emb|CAJ00749.1|2.0e-2696.55RNA polymerase beta chain (chloroplast) [Cucumis sativus][more]
gi|346578182|ref|YP_004841774.1|2.0e-2696.55RNA polymerase beta [Cucumis melo subsp. melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0009507 chloroplast
cellular_component GO:0005730 nucleolus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed RNA polymerase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G014220.1CmaCh01G014220.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh01G014220Cucurbita pepo (Zucchini)cmacpeB490
CmaCh01G014220Cucurbita pepo (Zucchini)cmacpeB503
CmaCh01G014220Cucurbita pepo (Zucchini)cmacpeB509
CmaCh01G014220Bottle gourd (USVL1VR-Ls)cmalsiB431
CmaCh01G014220Silver-seed gourdcarcmaB0897
CmaCh01G014220Silver-seed gourdcarcmaB0947
CmaCh01G014220Watermelon (97103) v2cmawmbB455
CmaCh01G014220Wax gourdcmawgoB0617
CmaCh01G014220Cucurbita maxima (Rimu)cmacmaB045
CmaCh01G014220Cucurbita maxima (Rimu)cmacmaB053
CmaCh01G014220Cucurbita moschata (Rifu)cmacmoB432
CmaCh01G014220Cucurbita moschata (Rifu)cmacmoB437
CmaCh01G014220Cucurbita moschata (Rifu)cmacmoB468
CmaCh01G014220Watermelon (Charleston Gray)cmawcgB393
CmaCh01G014220Watermelon (97103) v1cmawmB462