Cucsa.032730.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.GATGCTCAGAATAAGGTGGCAGCTTTTGCTCTTTGTCACTTGTTTCCAGATCTTCCTGTTCATGTTGCACTTATTGAGCCATATGCTTCTCTTGTTATGCAGTGGAAGGCAGGTAGCTGTTTTCACCATGCGCCCATTTAATTGGCTCTGCTTTTCATTCCAATCCACGGTGCAGTAGAGGAAAATATATAGAATATTAAAGCTTGAAAATGGTTAGGAAAATATTATTATCAATCAAAAAAATGTTTGTGTCTGTGCATTTTAATGTTGCATGGTTAGTCATGTTACACAGCAGGATTAGTAAATTTGTTGATACAACTAATACAATGATTTCTTATAATTGATCAAACAAATATTTGAAGTTTCATCTAGTATTTCAAATATGTAATCCCTGCATCATAATAAACATCTATTTGATTTGTTAAACTAGAATTCCATAACAACAATACAAGTATTTGTGTATATATCCTTTATTGCTAATGCCCTTTAATCTTTGCCATTGATTTTCATCGAAAAGTAGATGTTTATGATATATGGAGCACAATTATGCCTGCTTGGAATTTATGATATGGAGCACAATTATGCATGCTTGGAATTTGTAATCTTGCAGGAGAATCAATTAGCAAAGTTGACGACGATGAGAAAGATCGAAGGGCTAGTTTTGTTGATTCTTTGCTTGATGCTTCCAATATTGGTTCTGCTTCTAAAACTCTTGTTGGGAAAGTTGAACGGCTCAATATCGAGGATGATAAGAAGCCACGTGCTCTTGAACTTAATTCACATTCATTCGGGGAAA GATGCTCAGAATAAGGTGGCAGCTTTTGCTCTTTGTCACTTGTTTCCAGATCTTCCTGTTCATGTTGCACTTATTGAGCCATATGCTTCTCTTGTTATGCAGTGGAAGGCAGGAGAATCAATTAGCAAAGTTGACGACGATGAGAAAGATCGAAGGGCTAGTTTTGTTGATTCTTTGCTTGATGCTTCCAATATTGGTTCTGCTTCTAAAACTCTTGTTGGGAAAGTTGAACGGCTCAATATCGAGGATGATAAGAAGCCACGTGCTCTTGAACTTAATTCACATTCATTCGGGGAAA GATGCTCAGAATAAGGTGGCAGCTTTTGCTCTTTGTCACTTGTTTCCAGATCTTCCTGTTCATGTTGCACTTATTGAGCCATATGCTTCTCTTGTTATGCAGTGGAAGGCAGGAGAATCAATTAGCAAAGTTGACGACGATGAGAAAGATCGAAGGGCTAGTTTTGTTGATTCTTTGCTTGATGCTTCCAATATTGGTTCTGCTTCTAAAACTCTTGTTGGGAAAGTTGAACGGCTCAATATCGAGGATGATAAGAAGCCACGTGCTCTTGAACTTAATTCACATTCATTCGGGGAAA DAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDDEKDRRASFVDSLLDASNIGSASKTLVGKVERLNIEDDKKPRALELNSHSFGEX
BLAST of Cucsa.032730.1 vs. Swiss-Prot
Match: DEXH7_ARATH (DExH-box ATP-dependent RNA helicase DExH7, chloroplastic OS=Arabidopsis thaliana GN=At1g58060 PE=2 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 2.9e-13 Identity = 39/62 (62.90%), Postives = 47/62 (75.81%), Query Frame = 1
BLAST of Cucsa.032730.1 vs. Swiss-Prot
Match: DEXH4_ARATH (DExH-box ATP-dependent RNA helicase DExH4, chloroplastic OS=Arabidopsis thaliana GN=At1g58050 PE=3 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 3.7e-13 Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 1
BLAST of Cucsa.032730.1 vs. TrEMBL
Match: A0A0A0LAE3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G229380 PE=4 SV=1) HSP 1 Score: 198.0 bits (502), Expect = 5.5e-48 Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1
BLAST of Cucsa.032730.1 vs. TrEMBL
Match: M5XY08_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000230mg PE=4 SV=1) HSP 1 Score: 103.6 bits (257), Expect = 1.4e-19 Identity = 52/89 (58.43%), Postives = 66/89 (74.16%), Query Frame = 1
BLAST of Cucsa.032730.1 vs. TrEMBL
Match: F6HK50_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0035g00800 PE=4 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 3.9e-17 Identity = 48/95 (50.53%), Postives = 66/95 (69.47%), Query Frame = 1
BLAST of Cucsa.032730.1 vs. TrEMBL
Match: A0A0B0NB59_GOSAR (DEAH-box ATP-dependent helicase OS=Gossypium arboreum GN=F383_07581 PE=4 SV=1) HSP 1 Score: 95.1 bits (235), Expect = 5.1e-17 Identity = 46/93 (49.46%), Postives = 65/93 (69.89%), Query Frame = 1
BLAST of Cucsa.032730.1 vs. TrEMBL
Match: W9QMV9_9ROSA (ATP-dependent RNA helicase DHX29 OS=Morus notabilis GN=L484_018450 PE=4 SV=1) HSP 1 Score: 92.8 bits (229), Expect = 2.5e-16 Identity = 51/96 (53.12%), Postives = 65/96 (67.71%), Query Frame = 1
BLAST of Cucsa.032730.1 vs. TAIR10
Match: AT1G58060.1 (AT1G58060.1 RNA helicase family protein) HSP 1 Score: 75.9 bits (185), Expect = 1.6e-14 Identity = 39/62 (62.90%), Postives = 47/62 (75.81%), Query Frame = 1
BLAST of Cucsa.032730.1 vs. TAIR10
Match: AT1G58050.1 (AT1G58050.1 RNA helicase family protein) HSP 1 Score: 75.5 bits (184), Expect = 2.1e-14 Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 1
BLAST of Cucsa.032730.1 vs. NCBI nr
Match: gi|778680315|ref|XP_011651288.1| (PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis sativus]) HSP 1 Score: 198.0 bits (502), Expect = 8.0e-48 Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1
BLAST of Cucsa.032730.1 vs. NCBI nr
Match: gi|700202479|gb|KGN57612.1| (hypothetical protein Csa_3G229380 [Cucumis sativus]) HSP 1 Score: 198.0 bits (502), Expect = 8.0e-48 Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1
BLAST of Cucsa.032730.1 vs. NCBI nr
Match: gi|778680313|ref|XP_011651287.1| (PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis sativus]) HSP 1 Score: 198.0 bits (502), Expect = 8.0e-48 Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1
BLAST of Cucsa.032730.1 vs. NCBI nr
Match: gi|659112042|ref|XP_008456037.1| (PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis melo]) HSP 1 Score: 191.0 bits (484), Expect = 9.7e-46 Identity = 94/99 (94.95%), Postives = 98/99 (98.99%), Query Frame = 1
BLAST of Cucsa.032730.1 vs. NCBI nr
Match: gi|659112040|ref|XP_008456036.1| (PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis melo]) HSP 1 Score: 191.0 bits (484), Expect = 9.7e-46 Identity = 94/99 (94.95%), Postives = 98/99 (98.99%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
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