CSPI06G06970 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G06970
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Photosystem II reaction center Psb28 protein
Location	Chr6 : 6028469 .. 6029425 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAGTATAGTATTGACATTGATTTAATTTTGTATGTTTAGAAATGAAAGTGAAAAAGACTACAATTCTCCCTTTTGCAAAAAGTGAATGAATGGCTGTGGTGATTACACACACCTTTCCTCAATCTTCTTCACAAACCACACCATTCTCCCTTTTTCATCATCATCTTCATCTTCTTCTTCTTCTTCTTCATTCTTCCCCTGTTTCCAATTCTCAACAACATCAATGGCGTCTCTTCAATCTCTGGCCTCCACTACTTCCCCGTCTTCTCCTCATCTCCTTCATCCCTCTTCCACCAAACCCAAACTCTCTTACTCTCTCCACAGCAGCGCCTTCTCCTCATTCCACGGCCGCTCTCTTTCCCTCTCCACCACCAAATGCCACACACTCACTCGCCGCACTTACCGACAACGTTCATGGAACCCCATCCTCATGGTTCTGCCCAAGATTCAGTTCATCCAGGGCACGGACGAGCAGACAATCCCGGATGTGCGGCTGACGAAATCCCGAGACGGAACCAATGGAATGGCGATTTTTAGGTTCGAGCAGCCGTCAGTGTTCGATTCATCGGCGGAGGTTGGGGATATCACCGGCTTCTATATGATTGATGAAGAAGGGGTGATTCAATCGGTTGATGTGAATGCGAAGTTCGTAAATGGGAAACCGGCGGGGATTGAGGCGAAGTATGTGATGAGAACCCCGAGGGAATGGGATAGATTCATGAGATTCATGGAGCGATACTCCAATGCCAATGGGATGCAATTTGTCAAGAAATGAAATCAGGTTTTTTCTTTTGCACAATTTTGTTTTTGCGTTTGAAAATGAAGATCAATACTGTGTTGATTATGTCTGATGGATGAAGATTTAATTGAAGCTTTGTTCTATGTTCTTTCTATCCCCCTAAAGGGAATTTGTAATAACAAACAAAAGATTGTGAAAACAAAACAAACTCTGTACC

mRNA sequence

ATGAATGGCTGTGGTGATTACACACACCTTTCCTCAATCTTCTTCACAAACCACACCATTCTCCCTTTTTCATCATCATCTTCATCTTCTTCTTCTTCTTCTTCATTCTTCCCCTGTTTCCAATTCTCAACAACATCAATGGCGTCTCTTCAATCTCTGGCCTCCACTACTTCCCCGTCTTCTCCTCATCTCCTTCATCCCTCTTCCACCAAACCCAAACTCTCTTACTCTCTCCACAGCAGCGCCTTCTCCTCATTCCACGGCCGCTCTCTTTCCCTCTCCACCACCAAATGCCACACACTCACTCGCCGCACTTACCGACAACGTTCATGGAACCCCATCCTCATGGTTCTGCCCAAGATTCAGTTCATCCAGGGCACGGACGAGCAGACAATCCCGGATGTGCGGCTGACGAAATCCCGAGACGGAACCAATGGAATGGCGATTTTTAGGTTCGAGCAGCCGTCAGTGTTCGATTCATCGGCGGAGGTTGGGGATATCACCGGCTTCTATATGATTGATGAAGAAGGGGTGATTCAATCGGTTGATGTGAATGCGAAGTTCGTAAATGGGAAACCGGCGGGGATTGAGGCGAAGTATGTGATGAGAACCCCGAGGGAATGGGATAGATTCATGAGATTCATGGAGCGATACTCCAATGCCAATGGGATGCAATTTGTCAAGAAATGA

Coding sequence (CDS)

ATGAATGGCTGTGGTGATTACACACACCTTTCCTCAATCTTCTTCACAAACCACACCATTCTCCCTTTTTCATCATCATCTTCATCTTCTTCTTCTTCTTCTTCATTCTTCCCCTGTTTCCAATTCTCAACAACATCAATGGCGTCTCTTCAATCTCTGGCCTCCACTACTTCCCCGTCTTCTCCTCATCTCCTTCATCCCTCTTCCACCAAACCCAAACTCTCTTACTCTCTCCACAGCAGCGCCTTCTCCTCATTCCACGGCCGCTCTCTTTCCCTCTCCACCACCAAATGCCACACACTCACTCGCCGCACTTACCGACAACGTTCATGGAACCCCATCCTCATGGTTCTGCCCAAGATTCAGTTCATCCAGGGCACGGACGAGCAGACAATCCCGGATGTGCGGCTGACGAAATCCCGAGACGGAACCAATGGAATGGCGATTTTTAGGTTCGAGCAGCCGTCAGTGTTCGATTCATCGGCGGAGGTTGGGGATATCACCGGCTTCTATATGATTGATGAAGAAGGGGTGATTCAATCGGTTGATGTGAATGCGAAGTTCGTAAATGGGAAACCGGCGGGGATTGAGGCGAAGTATGTGATGAGAACCCCGAGGGAATGGGATAGATTCATGAGATTCATGGAGCGATACTCCAATGCCAATGGGATGCAATTTGTCAAGAAATGA

Homology

[Close]

BLAST of CSPI06G06970 vs. Swiss-Prot
Match: PSB28_ORYSJ (Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSB28 PE=2 SV=2)

HSP 1 Score: 211.8 bits (538), Expect = 7.7e-54
Identity = 122/188 (64.89%), Postives = 139/188 (73.94%), Query Frame = 1


Query: 47  MASLQSLASTTSPSSPHLLH---PSSTKPKLSYSLHSSAFSSFHGRSLSLSTTKCHTLTR 106
           MA++    +  SP S        P+ +    S SLHSS    F G SL    TK  +L  
Sbjct: 1   MAAVMKALAVASPISARAQPRRCPAGSSGGPSQSLHSS----FGGVSLQCRRTKPASL-- 60

Query: 107 RTYRQRSWNPILMVL--PKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSS 166
             +R R    ++M+   P IQFIQGTDEQTIPDVRLTKSRDGTNG+AIF F+QPSVFDSS
Sbjct: 61  --HRSRPSMQVVMMAARPAIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFDQPSVFDSS 120

Query: 167 AEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDRFMRFMERYSNA 226
           AE+GDITGFYMID+EGV+QSVDV+AKFVNGKPA IEAKYVMRTPREWDRFMRFMERYS A
Sbjct: 121 AELGDITGFYMIDDEGVLQSVDVSAKFVNGKPALIEAKYVMRTPREWDRFMRFMERYSQA 180

Query: 227 NGMQFVKK 230
           NG+QFVKK
Sbjct: 181 NGLQFVKK 180

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BLAST of CSPI06G06970 vs. Swiss-Prot
Match: PSB28_ARATH (Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thaliana GN=PSB28 PE=2 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 4.4e-49
Identity = 109/186 (58.60%), Postives = 133/186 (71.51%), Query Frame = 1


Query: 47  MASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 106
           MA ++S+ S TS +      P S     S S+     SSF G  +SL   +  + T    
Sbjct: 1   MACVRSIGSLTSVNHSQRNVPRSGIVLSSCSVLPIKSSSFTGSPVSLPRAQPSSRTAL-- 60

Query: 107 RQRSWNPI---LMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAE 166
             R   P+   +MV P +QFIQGTDE TIPDV+LT+SRDG+NGMA+F F+QPSVFDSS E
Sbjct: 61  --RPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSSGE 120

Query: 167 VGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG 226
           VG+ITG YMIDEEGVIQS DVNA+FVNGKP GI AK++MR+P+EWDRFMRFMERYS+ NG
Sbjct: 121 VGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQNG 180

Query: 227 MQFVKK 230
           +QFVKK
Sbjct: 181 LQFVKK 182

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BLAST of CSPI06G06970 vs. Swiss-Prot
Match: PSB28_ODOSI (Photosystem II reaction center Psb28 protein OS=Odontella sinensis GN=psb28 PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 8.0e-35
Identity = 65/110 (59.09%), Postives = 89/110 (80.91%), Query Frame = 1


Query: 120 KIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFD-SSAEVGDITGFYMIDEEGV 179
           KIQFI+G DE+ +PDVRLT+SRDG+ G A FRF+ P++ D S+A+ G+ITG Y+ID+EG 
Sbjct: 4   KIQFIKGLDEKVLPDVRLTRSRDGSTGTATFRFKNPNILDKSTAKEGEITGMYLIDQEGT 63

Query: 180 IQSVDVNAKFVNGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGMQFVK 229
           +++ DVNA+F+NGKP  IE+ Y+M++P  WDRFMRFMERY  +NG+ F K
Sbjct: 64  LETRDVNAQFINGKPEAIESIYIMKSPEAWDRFMRFMERYGESNGLVFTK 113

[Close]

BLAST of CSPI06G06970 vs. Swiss-Prot
Match: PSB28_PHATC (Photosystem II reaction center Psb28 protein OS=Phaeodactylum tricornutum (strain CCAP 1055/1) GN=psb28 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.0e-34
Identity = 65/110 (59.09%), Postives = 89/110 (80.91%), Query Frame = 1


Query: 120 KIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFD-SSAEVGDITGFYMIDEEGV 179
           KIQFI+G DE+ +PDVRLT+S+DG+ G A FRF+ P++ D ++A+ G+ITG Y+IDEEG+
Sbjct: 4   KIQFIKGLDEKVLPDVRLTRSKDGSTGTATFRFKNPNILDKTTAKEGEITGMYLIDEEGI 63

Query: 180 IQSVDVNAKFVNGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGMQFVK 229
           +++ DVNA+FVNGKP  IE+ Y+M++P  WDRFMRFMERY   NG+ F K
Sbjct: 64  LETRDVNARFVNGKPEAIESIYIMKSPEAWDRFMRFMERYGETNGLVFSK 113

[Close]

BLAST of CSPI06G06970 vs. Swiss-Prot
Match: PSB28_GUITH (Photosystem II reaction center Psb28 protein OS=Guillardia theta GN=psb28 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 5.2e-34
Identity = 68/109 (62.39%), Postives = 84/109 (77.06%), Query Frame = 1


Query: 121 IQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAEV-GDITGFYMIDEEGVI 180
           IQFIQG +E  IPDVRLT+SRDG+ G A FRF  P V ++ + V G+ITG Y+IDEEG +
Sbjct: 4   IQFIQGVNEDVIPDVRLTRSRDGSTGTATFRFANPKVLEAQSSVKGNITGMYLIDEEGQL 63

Query: 181 QSVDVNAKFVNGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGMQFVK 229
            + DVNA+FVNGKP GIEA Y+M++  +WDRFMRFMERYS  NG+ F K
Sbjct: 64  VTRDVNARFVNGKPQGIEAVYIMQSKEDWDRFMRFMERYSEDNGLSFTK 112

[Close]

BLAST of CSPI06G06970 vs. TrEMBL
Match: A0A0A0K9C2_CUCSA (Photosystem II reaction center Psb28 protein OS=Cucumis sativus GN=Csa_6G087980 PE=3 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 4.2e-107
Identity = 204/206 (99.03%), Postives = 206/206 (100.00%), Query Frame = 1


Query: 24  SSSSSSSSSSSSFFPCFQFSTTSMASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSAF 83
           SSSSSSSSSSSSFFPCFQFSTTSMASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSAF
Sbjct: 171 SSSSSSSSSSSSFFPCFQFSTTSMASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSAF 230

Query: 84  SSFHGRSLSLSTTKCHTLTRRTYRQRSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDG 143
           SSFHGRSLSLSTTKCHTLTRRTYRQRSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDG
Sbjct: 231 SSFHGRSLSLSTTKCHTLTRRTYRQRSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDG 290

Query: 144 TNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMR 203
           TNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEG+IQSVDVNAKF+NGKPAGIEAKYVMR
Sbjct: 291 TNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMR 350

Query: 204 TPREWDRFMRFMERYSNANGMQFVKK 230
           TPREWDRFMRFMERYSNANGMQFVKK
Sbjct: 351 TPREWDRFMRFMERYSNANGMQFVKK 376

[Close]

BLAST of CSPI06G06970 vs. TrEMBL
Match: A0A0B0MPB9_GOSAR (Photosystem II reaction center Psb28 protein OS=Gossypium arboreum GN=F383_22079 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 7.7e-61
Identity = 128/184 (69.57%), Postives = 149/184 (80.98%), Query Frame = 1


Query: 47  MASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 106
           MA+LQSLA  +  S   L  P S     S+  H SA S F+G+SL ++ ++   ++   +
Sbjct: 1   MATLQSLALASPVSHSFLNQPRSLSGMPSWVAHRSANSQFNGQSLQVAQSR---ISPTRW 60

Query: 107 RQRSWNPI-LMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAEVG 166
             +  +PI +MV PKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRF+QPSVFDSS+EVG
Sbjct: 61  NSKRCSPIVMMVKPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFDQPSVFDSSSEVG 120

Query: 167 DITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGMQ 226
           DITGFYMIDEEGV+QSVDVNAKFVNGKPAGIEAKY+MRTPREWDRFMRFMERYSN NG+Q
Sbjct: 121 DITGFYMIDEEGVLQSVDVNAKFVNGKPAGIEAKYIMRTPREWDRFMRFMERYSNENGLQ 180

Query: 227 FVKK 230
           F+KK
Sbjct: 181 FIKK 181

[Close]

BLAST of CSPI06G06970 vs. TrEMBL
Match: A0A0D2QS78_GOSRA (Photosystem II reaction center Psb28 protein OS=Gossypium raimondii GN=B456_001G182100 PE=3 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 5.0e-60
Identity = 127/184 (69.02%), Postives = 148/184 (80.43%), Query Frame = 1


Query: 47  MASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 106
           MA+LQSLA  +  S   L  P S     S+  H SA S F+G+SL ++ ++   ++   +
Sbjct: 1   MATLQSLALASPVSHSFLNQPRSLSGIPSWVAHRSANSQFNGQSLQVAQSR---ISPTRW 60

Query: 107 RQRSWNPI-LMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAEVG 166
             +  +PI +MV PKIQFIQGTDEQT PDVRLTKSRDGTNGMAIFRF+QPSVFDSS+EVG
Sbjct: 61  NSKRCSPIVMMVKPKIQFIQGTDEQTTPDVRLTKSRDGTNGMAIFRFDQPSVFDSSSEVG 120

Query: 167 DITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGMQ 226
           DITGFYMIDEEGV+QSVDVNAKFVNGKPAGIEAKY+MRTPREWDRFMRFMERYSN NG+Q
Sbjct: 121 DITGFYMIDEEGVLQSVDVNAKFVNGKPAGIEAKYIMRTPREWDRFMRFMERYSNENGLQ 180

Query: 227 FVKK 230
           F+KK
Sbjct: 181 FIKK 181

[Close]

BLAST of CSPI06G06970 vs. TrEMBL
Match: A0A059A1X0_EUCGR (Photosystem II reaction center Psb28 protein OS=Eucalyptus grandis GN=EUGRSUZ_K01424 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.9e-59
Identity = 126/183 (68.85%), Postives = 147/183 (80.33%), Query Frame = 1


Query: 47  MASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 106
           MASLQSL+ ++  S  H   P +    +S  LH SA S+FHG++L L  T+  +L  +  
Sbjct: 1   MASLQSLSFSSPVSYYHQQQPRTHSGFISSPLHRSASSTFHGQTLHLPHTQRASL--KVN 60

Query: 107 RQRSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAEVGD 166
            + S   I+MV P IQFIQGTDEQTIPDVRLTKSRDGTNG+A FRFEQPSVFD+S +VGD
Sbjct: 61  GRTSRPVIMMVKPTIQFIQGTDEQTIPDVRLTKSRDGTNGVATFRFEQPSVFDASGDVGD 120

Query: 167 ITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGMQF 226
           ITGFYMIDEEGV+QSVDVNAKFVNGKPAGIEAKY+MR+PREWDRFMRFMERYSN NG+QF
Sbjct: 121 ITGFYMIDEEGVLQSVDVNAKFVNGKPAGIEAKYIMRSPREWDRFMRFMERYSNQNGLQF 180

Query: 227 VKK 230
           +KK
Sbjct: 181 IKK 181

[Close]

BLAST of CSPI06G06970 vs. TrEMBL
Match: M5W031_PRUPE (Photosystem II reaction center Psb28 protein OS=Prunus persica GN=PRUPE_ppa012196mg PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.9e-59
Identity = 128/183 (69.95%), Postives = 148/183 (80.87%), Query Frame = 1


Query: 47  MASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 106
           MA+LQSLA + SP S  L  P      LS+++H SA S+F+G+SL +S  +   + R T 
Sbjct: 1   MATLQSLAFS-SPVSHCLQQPRLHSGLLSWTVHRSAKSTFNGQSLHVSRPQWAPIRRCTQ 60

Query: 107 RQRSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAEVGD 166
             RS    +MV PKIQFIQGTDEQTIPDVRLTKS+DGTNG+AIF+FEQPSVFDSS E GD
Sbjct: 61  ASRSIT--MMVKPKIQFIQGTDEQTIPDVRLTKSKDGTNGVAIFKFEQPSVFDSSGEFGD 120

Query: 167 ITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGMQF 226
           ITGFYMIDEEGV+QSVDVNAKFVNGKPAGIEAKY MRTPR+WDRFMRFMERY+N NG+QF
Sbjct: 121 ITGFYMIDEEGVLQSVDVNAKFVNGKPAGIEAKYTMRTPRDWDRFMRFMERYANDNGLQF 180

Query: 227 VKK 230
           +KK
Sbjct: 181 IKK 180

[Close]

BLAST of CSPI06G06970 vs. TAIR10
Match: AT4G28660.2 (AT4G28660.2 photosystem II reaction center PSB28 protein)

HSP 1 Score: 196.8 bits (499), Expect = 1.4e-50
Identity = 99/149 (66.44%), Postives = 118/149 (79.19%), Query Frame = 1


Query: 84  SSFHGRSLSLSTTKCHTLTRRTYRQRSWNPI---LMVLPKIQFIQGTDEQTIPDVRLTKS 143
           SSF G  +SL   +  + T      R   P+   +MV P +QFIQGTDE TIPDV+LT+S
Sbjct: 53  SSFTGSPVSLPRAQPSSRTAL----RPMKPVSITMMVKPALQFIQGTDEMTIPDVKLTRS 112

Query: 144 RDGTNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKY 203
           RDG+NGMA+F F+QPSVFDSS EVG+ITG YMIDEEGVIQS DVNA+FVNGKP GI AK+
Sbjct: 113 RDGSNGMALFSFDQPSVFDSSGEVGEITGLYMIDEEGVIQSTDVNARFVNGKPEGIVAKH 172

Query: 204 VMRTPREWDRFMRFMERYSNANGMQFVKK 230
           +MR+P+EWDRFMRFMERYS+ NG+QFVKK
Sbjct: 173 IMRSPKEWDRFMRFMERYSDQNGLQFVKK 197

[Close]

BLAST of CSPI06G06970 vs. NCBI nr
Match: gi|778711592|ref|XP_011656764.1| (PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 436.4 bits (1121), Expect = 3.1e-119
Identity = 224/229 (97.82%), Postives = 226/229 (98.69%), Query Frame = 1


Query: 1   MNGCGDYTHLSSIFFTNHTILPFSSSSSSSSSSSSFFPCFQFSTTSMASLQSLASTTSPS 60
           MNGCGDYTHLSSIFFTNHTILPFS   SSSSSSSSFFPCFQFSTTSMASLQSLASTTSPS
Sbjct: 1   MNGCGDYTHLSSIFFTNHTILPFS---SSSSSSSSFFPCFQFSTTSMASLQSLASTTSPS 60

Query: 61  SPHLLHPSSTKPKLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTYRQRSWNPILMVLPK 120
           SPHLLHPSSTKPKLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTYRQRSWNPILMVLPK
Sbjct: 61  SPHLLHPSSTKPKLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTYRQRSWNPILMVLPK 120

Query: 121 IQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEGVIQ 180
           IQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEG+IQ
Sbjct: 121 IQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEGMIQ 180

Query: 181 SVDVNAKFVNGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGMQFVKK 230
           SVDVNAKF+NGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGMQFVKK
Sbjct: 181 SVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGMQFVKK 226

[Close]

BLAST of CSPI06G06970 vs. NCBI nr
Match: gi|700191166|gb|KGN46370.1| (hypothetical protein Csa_6G087980 [Cucumis sativus])

HSP 1 Score: 395.6 bits (1015), Expect = 6.0e-107
Identity = 204/206 (99.03%), Postives = 206/206 (100.00%), Query Frame = 1


Query: 24  SSSSSSSSSSSSFFPCFQFSTTSMASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSAF 83
           SSSSSSSSSSSSFFPCFQFSTTSMASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSAF
Sbjct: 171 SSSSSSSSSSSSFFPCFQFSTTSMASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSAF 230

Query: 84  SSFHGRSLSLSTTKCHTLTRRTYRQRSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDG 143
           SSFHGRSLSLSTTKCHTLTRRTYRQRSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDG
Sbjct: 231 SSFHGRSLSLSTTKCHTLTRRTYRQRSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDG 290

Query: 144 TNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMR 203
           TNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEG+IQSVDVNAKF+NGKPAGIEAKYVMR
Sbjct: 291 TNGMAIFRFEQPSVFDSSAEVGDITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMR 350

Query: 204 TPREWDRFMRFMERYSNANGMQFVKK 230
           TPREWDRFMRFMERYSNANGMQFVKK
Sbjct: 351 TPREWDRFMRFMERYSNANGMQFVKK 376

[Close]

BLAST of CSPI06G06970 vs. NCBI nr
Match: gi|778711596|ref|XP_011656765.1| (PREDICTED: photosystem II reaction center Psb28 protein isoform X2 [Cucumis sativus])

HSP 1 Score: 361.3 bits (926), Expect = 1.2e-96
Identity = 181/183 (98.91%), Postives = 183/183 (100.00%), Query Frame = 1


Query: 47  MASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 106
           MASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY
Sbjct: 1   MASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60

Query: 107 RQRSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAEVGD 166
           RQRSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAEVGD
Sbjct: 61  RQRSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAEVGD 120

Query: 167 ITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGMQF 226
           ITGFYMIDEEG+IQSVDVNAKF+NGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGMQF
Sbjct: 121 ITGFYMIDEEGMIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGMQF 180

Query: 227 VKK 230
           VKK
Sbjct: 181 VKK 183

[Close]

BLAST of CSPI06G06970 vs. NCBI nr
Match: gi|659120023|ref|XP_008459971.1| (PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic [Cucumis melo])

HSP 1 Score: 350.5 bits (898), Expect = 2.2e-93
Identity = 175/183 (95.63%), Postives = 180/183 (98.36%), Query Frame = 1


Query: 47  MASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 106
           MASLQSLASTTSPSSPHLLHPSSTK +LSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY
Sbjct: 1   MASLQSLASTTSPSSPHLLHPSSTKLRLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 60

Query: 107 RQRSWNPILMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAEVGD 166
           RQR WNPILMV PKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIFRF+QPSVFDSSAEVGD
Sbjct: 61  RQRPWNPILMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFRFDQPSVFDSSAEVGD 120

Query: 167 ITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGMQF 226
           ITGFYMIDEEGVIQSVDVNAKF+NGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG+QF
Sbjct: 121 ITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQF 180

Query: 227 VKK 230
           VKK
Sbjct: 181 VKK 183

[Close]

BLAST of CSPI06G06970 vs. NCBI nr
Match: gi|728813701|gb|KHG01299.1| (Photosystem II reaction center PSB28, chloroplastic [Gossypium arboreum])

HSP 1 Score: 241.9 bits (616), Expect = 1.1e-60
Identity = 128/184 (69.57%), Postives = 149/184 (80.98%), Query Frame = 1


Query: 47  MASLQSLASTTSPSSPHLLHPSSTKPKLSYSLHSSAFSSFHGRSLSLSTTKCHTLTRRTY 106
           MA+LQSLA  +  S   L  P S     S+  H SA S F+G+SL ++ ++   ++   +
Sbjct: 1   MATLQSLALASPVSHSFLNQPRSLSGMPSWVAHRSANSQFNGQSLQVAQSR---ISPTRW 60

Query: 107 RQRSWNPI-LMVLPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFEQPSVFDSSAEVG 166
             +  +PI +MV PKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRF+QPSVFDSS+EVG
Sbjct: 61  NSKRCSPIVMMVKPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFDQPSVFDSSSEVG 120

Query: 167 DITGFYMIDEEGVIQSVDVNAKFVNGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGMQ 226
           DITGFYMIDEEGV+QSVDVNAKFVNGKPAGIEAKY+MRTPREWDRFMRFMERYSN NG+Q
Sbjct: 121 DITGFYMIDEEGVLQSVDVNAKFVNGKPAGIEAKYIMRTPREWDRFMRFMERYSNENGLQ 180

Query: 227 FVKK 230
           F+KK
Sbjct: 181 FIKK 181

The following BLAST results are available for this feature:

BLAST of CSPI06G06970 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSB28_ORYSJ	7.7e-54	64.89	Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subs...	[more]
PSB28_ARATH	4.4e-49	58.60	Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thali...	[more]
PSB28_ODOSI	8.0e-35	59.09	Photosystem II reaction center Psb28 protein OS=Odontella sinensis GN=psb28 PE=3...	[more]
PSB28_PHATC	1.0e-34	59.09	Photosystem II reaction center Psb28 protein OS=Phaeodactylum tricornutum (strai...	[more]
PSB28_GUITH	5.2e-34	62.39	Photosystem II reaction center Psb28 protein OS=Guillardia theta GN=psb28 PE=3 S...	[more]

BLAST of CSPI06G06970 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9C2_CUCSA	4.2e-107	99.03	Photosystem II reaction center Psb28 protein OS=Cucumis sativus GN=Csa_6G087980 ...	[more]
A0A0B0MPB9_GOSAR	7.7e-61	69.57	Photosystem II reaction center Psb28 protein OS=Gossypium arboreum GN=F383_22079...	[more]
A0A0D2QS78_GOSRA	5.0e-60	69.02	Photosystem II reaction center Psb28 protein OS=Gossypium raimondii GN=B456_001G...	[more]
A0A059A1X0_EUCGR	1.9e-59	68.85	Photosystem II reaction center Psb28 protein OS=Eucalyptus grandis GN=EUGRSUZ_K0...	[more]
M5W031_PRUPE	1.9e-59	69.95	Photosystem II reaction center Psb28 protein OS=Prunus persica GN=PRUPE_ppa01219...	[more]

BLAST of CSPI06G06970 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G28660.2	1.4e-50	66.44	photosystem II reaction center PSB28 protein	[more]

BLAST of CSPI06G06970 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778711592\|ref\|XP_011656764.1\|	3.1e-119	97.82	PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic isoform X...	[more]
gi\|700191166\|gb\|KGN46370.1\|	6.0e-107	99.03	hypothetical protein Csa_6G087980 [Cucumis sativus]	[more]
gi\|778711596\|ref\|XP_011656765.1\|	1.2e-96	98.91	PREDICTED: photosystem II reaction center Psb28 protein isoform X2 [Cucumis sati...	[more]
gi\|659120023\|ref\|XP_008459971.1\|	2.2e-93	95.63	PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic [Cucumis ...	[more]
gi\|728813701\|gb\|KHG01299.1\|	1.1e-60	69.57	Photosystem II reaction center PSB28, chloroplastic [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005610	PSII_Psb28_class-1

Vocabulary: **Cellular Component**
Term	Definition
GO:0009523	photosystem II
GO:0009654	photosystem II oxygen evolving complex
GO:0016020	membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0016020	membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G06970.1	CSPI06G06970.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005610	Photosystem II Psb28, class 1	PRODOM	PD012692		coord: 122..221 score: 1.0
IPR005610	Photosystem II Psb28, class 1	HAMAP	MF_01370	PSII_Psb28	coord: 118..227 score: 30
IPR005610	Photosystem II Psb28, class 1	PFAM	PF03912	Psb28	coord: 121..226 score: 1.6
IPR005610	Photosystem II Psb28, class 1	TIGRFAMs	TIGR03047	TIGR03047	coord: 121..227 score: 1.4
None	No IPR available	PANTHER	PTHR34963	FAMILY NOT NAMED	coord: 48..229 score: 9.8E
None	No IPR available	PANTHER	PTHR34963:SF2	PHOTOSYSTEM II REACTION CENTER PSB28 PROTEIN, CHLOROPLASTIC	coord: 48..229 score: 9.8E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G06970	Cla007062	Watermelon (97103) v1	cpiwmB556
CSPI06G06970	Csa6G087980	Cucumber (Chinese Long) v2	cpicuB314
CSPI06G06970	MELO3C022393	Melon (DHL92) v3.5.1	cpimeB433
CSPI06G06970	ClCG06G001400	Watermelon (Charleston Gray)	cpiwcgB503
CSPI06G06970	Lsi09G018010	Bottle gourd (USVL1VR-Ls)	cpilsiB404
CSPI06G06970	MELO3C022393.2	Melon (DHL92) v3.6.1	cpimedB431
CSPI06G06970	Bhi12G002083	Wax gourd	cpiwgoB537
CSPI06G06970	Cucsa.348850	Cucumber (Gy14) v1	cgycpiB517
CSPI06G06970	CmaCh17G013700	Cucurbita maxima (Rimu)	cmacpiB371
CSPI06G06970	CmaCh08G000440	Cucurbita maxima (Rimu)	cmacpiB923
CSPI06G06970	CmoCh17G013240	Cucurbita moschata (Rifu)	cmocpiB361
CSPI06G06970	CmoCh08G000440	Cucurbita moschata (Rifu)	cmocpiB902
CSPI06G06970	Cp4.1LG12g10160	Cucurbita pepo (Zucchini)	cpecpiB144
CSPI06G06970	Cp4.1LG17g09650	Cucurbita pepo (Zucchini)	cpecpiB323
CSPI06G06970	CsGy6G006990	Cucumber (Gy14) v2	cgybcpiB288
CSPI06G06970	Carg03787	Silver-seed gourd	carcpiB1018
CSPI06G06970	Carg11538	Silver-seed gourd	carcpiB0012

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G06970	Cucumber (Chinese Long) v3	cpicucB341
CSPI06G06970	Cucumber (Chinese Long) v3	cpicucB364
CSPI06G06970	Watermelon (97103) v2	cpiwmbB495
CSPI06G06970	Watermelon (97103) v1	cpiwmB512