CSPI06G05500 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G05500
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 5017715 .. 5018963 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGGTCAGACTCCAATGCCCCATCCTGTGCCTTTTGTAATCCAAGGCAAATTAAGGATCTTAATTTTAGCATGTTAGGAGTCAATTTAACAAATATTGGGGCGAAGGCTAAAGTTTTAAACCCCAGGTTTAAAATTTAAATCTTAAAATCCTATCTATGGATAGGGAGAGCCTCCCAAATATCAAGGGGGTGGGGTATAAGCAAAATCCAAGTGGTGGGACCAAGATCTCGGTCATTAAAAGGGAAAAGGAAAAAGTCTCACAAAGAATATAACTGAAAACAGAACTCAAGATAATCAGAACAAAGAATTGGAAGGAGAAGGGAAACCCGCTTGAAATAAGCGCTCACAAAGGACCAAGAGAGAGAAGAAAGAAAGCAAACAGGAGATATTCGTCATAAAGTGCGAATCAATCTCCAAAATTAAGGCAAACTCGAATAAGAAGCAAGCAGACGAGCAATAGAGAATAACACAGCAAGAACAATAAGTAACAACACCAAATCAAGCAGAAGAGGAGGTTGTTAGCGAAACACATGAGAAGGACAGTAGGGAATTCATGAGAAATGGACATAAGGGATTGGTTGAATAAAACAATTAAAGTGGTAACGTAGAAAGAAACAGAAGGGAGGTAAAATCCCACAAAACCTAGATCAAGAAAACAGGAACAGGGGCAAATCCTCACACCAAGAACACAAGCATACCACAAAATTGGAAGGAAAAAAAAAAAGGAAAACCAGAAAAGGGAAGTGATGAGATAGATTAATTGAATACCTAATCAGACAACCAGAATCAAAGTGAGTCCGTTTGAGCAAATGAAAGCGGCAAGCAAAGCGAACCGAGTTGAATCGGATGATAGAGAAAGGTAGAGATGGAAAGAAAAAGAGCCTCGGAGTTTGCAATAAGAAAGTAACACAAAGTTTATCTATTAAACACCTTATTGTTGCTGAATTGAAGAAAGAGAGATCGGGATTTGATTGTATTCGTGGGAAAGTAGAAAGCGTCAGCGATTCGTTGTCTTTCCTTCTTCTCCTCCAAAATGGCGCATGGTTGGTTGTTAGTGACGACGTTAACCCCGCGTTTGCTTTGCCTATCCAAATTGCCTTTCTTCCTATGGACGATGGCGATGCTCATAATTTCCTTAATCCTGATTGTGACCGTTTGATTATCATACAAGAATTTGGTGGCACACCTTCCAATGACCTCCTCATCTTCGATGTTTTCTTTAGTCCAAATCCCAACTTTGTTTGGTAG

mRNA sequence

ATGATAGAGAAAGGTAGAGATGGAAAGAAAAAGAGCCTCGGAGTTTGCAATAAGAAAGTAACACAAAGTTTATCTATTAAACACCTTATTGTTGCTGAATTGAAGAAAGAGAGATCGGGATTTGATTGTATTCGTGGGAAAGTAGAAAGCGTCAGCGATTCGTTGTCTTTCCTTCTTCTCCTCCAAAATGGCGCATGGTTGGTTGTTAGTGACGACGTTAACCCCGCGTTTGCTTTGCCTATCCAAATTGCCTTTCTTCCTATGGACGATGGCGATGCTCATAATTTCCTTAATCCTGATTGTGACCGTTTGATTATCATACAAGAATTTGGTGGCACACCTTCCAATGACCTCCTCATCTTCGATGTTTTCTTTAGTCCAAATCCCAACTTTGTTTGGTAG

Coding sequence (CDS)

ATGATAGAGAAAGGTAGAGATGGAAAGAAAAAGAGCCTCGGAGTTTGCAATAAGAAAGTAACACAAAGTTTATCTATTAAACACCTTATTGTTGCTGAATTGAAGAAAGAGAGATCGGGATTTGATTGTATTCGTGGGAAAGTAGAAAGCGTCAGCGATTCGTTGTCTTTCCTTCTTCTCCTCCAAAATGGCGCATGGTTGGTTGTTAGTGACGACGTTAACCCCGCGTTTGCTTTGCCTATCCAAATTGCCTTTCTTCCTATGGACGATGGCGATGCTCATAATTTCCTTAATCCTGATTGTGACCGTTTGATTATCATACAAGAATTTGGTGGCACACCTTCCAATGACCTCCTCATCTTCGATGTTTTCTTTAGTCCAAATCCCAACTTTGTTTGGTAG
Homology
[Close]
BLAST of CSPI06G05500 vs. TrEMBL
Match: A0A0A0KEK2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G074540 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 6.9e-70
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 1 

Query: 1   MIEKGRDGKKKSLGVCNKKVTQSLSIKHLIVAELKKERSGFDCIRGKVESVSDSLSFLLL 60
           MIEKGRDGKKKSLGVCNKKVTQSLSIKHLIVAELKKERSGFDCIRGKVESVSDSLSFLLL
Sbjct: 1   MIEKGRDGKKKSLGVCNKKVTQSLSIKHLIVAELKKERSGFDCIRGKVESVSDSLSFLLL 60

Query: 61  LQNGAWLVVSDDVNPAFALPIQIAFLPMDDGDAHNFLNPDCDRLIIIQEFGGTPSNDLLI 120
           LQNGAWLVVSDDVNPAFALPIQIAFLPMDDGDAHNFLNPDCDRLIIIQEFGGTPSNDLLI
Sbjct: 61  LQNGAWLVVSDDVNPAFALPIQIAFLPMDDGDAHNFLNPDCDRLIIIQEFGGTPSNDLLI 120

Query: 121 FDVFFSPNPNFVW 134
            DVFFSPNPNFVW
Sbjct: 121 IDVFFSPNPNFVW 133

[Close]
BLAST of CSPI06G05500 vs. NCBI nr
Match: gi|700190997|gb|KGN46201.1| (hypothetical protein Csa_6G074540 [Cucumis sativus])

HSP 1 Score: 271.2 bits (692), Expect = 9.9e-70
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 1 

Query: 1   MIEKGRDGKKKSLGVCNKKVTQSLSIKHLIVAELKKERSGFDCIRGKVESVSDSLSFLLL 60
           MIEKGRDGKKKSLGVCNKKVTQSLSIKHLIVAELKKERSGFDCIRGKVESVSDSLSFLLL
Sbjct: 1   MIEKGRDGKKKSLGVCNKKVTQSLSIKHLIVAELKKERSGFDCIRGKVESVSDSLSFLLL 60

Query: 61  LQNGAWLVVSDDVNPAFALPIQIAFLPMDDGDAHNFLNPDCDRLIIIQEFGGTPSNDLLI 120
           LQNGAWLVVSDDVNPAFALPIQIAFLPMDDGDAHNFLNPDCDRLIIIQEFGGTPSNDLLI
Sbjct: 61  LQNGAWLVVSDDVNPAFALPIQIAFLPMDDGDAHNFLNPDCDRLIIIQEFGGTPSNDLLI 120

Query: 121 FDVFFSPNPNFVW 134
            DVFFSPNPNFVW
Sbjct: 121 IDVFFSPNPNFVW 133

The following BLAST results are available for this feature:
BLAST of CSPI06G05500 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G05500 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KEK2_CUCSA6.9e-7099.25Uncharacterized protein OS=Cucumis sativus GN=Csa_6G074540 PE=4 SV=1[more]
BLAST of CSPI06G05500 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G05500 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190997|gb|KGN46201.1|9.9e-7099.25hypothetical protein Csa_6G074540 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G05500.1CSPI06G05500.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G05500Csa6G074540Cucumber (Chinese Long) v2cpicuB314
CSPI06G05500CsaV3_6G005810Cucumber (Chinese Long) v3cpicucB364
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G05500Cucurbita moschata (Rifu)cmocpiB263
CSPI06G05500Cucurbita moschata (Rifu)cmocpiB343
CSPI06G05500Cucurbita moschata (Rifu)cmocpiB375
CSPI06G05500Cucurbita moschata (Rifu)cmocpiB839
CSPI06G05500Cucurbita moschata (Rifu)cmocpiB893
CSPI06G05500Cucumber (Chinese Long) v2cpicuB283
CSPI06G05500Melon (DHL92) v3.5.1cpimeB433
CSPI06G05500Melon (DHL92) v3.5.1cpimeB496
CSPI06G05500Watermelon (Charleston Gray)cpiwcgB494
CSPI06G05500Watermelon (Charleston Gray)cpiwcgB503
CSPI06G05500Watermelon (97103) v1cpiwmB508
CSPI06G05500Watermelon (97103) v1cpiwmB517
CSPI06G05500Watermelon (97103) v1cpiwmB556
CSPI06G05500Cucurbita pepo (Zucchini)cpecpiB157
CSPI06G05500Cucurbita pepo (Zucchini)cpecpiB324
CSPI06G05500Cucurbita pepo (Zucchini)cpecpiB879
CSPI06G05500Bottle gourd (USVL1VR-Ls)cpilsiB404
CSPI06G05500Bottle gourd (USVL1VR-Ls)cpilsiB470
CSPI06G05500Bottle gourd (USVL1VR-Ls)cpilsiB469
CSPI06G05500Melon (DHL92) v3.6.1cpimedB431
CSPI06G05500Melon (DHL92) v3.6.1cpimedB483
CSPI06G05500Melon (DHL92) v3.6.1cpimedB488
CSPI06G05500Cucumber (Gy14) v2cgybcpiB141
CSPI06G05500Cucumber (Gy14) v2cgybcpiB288
CSPI06G05500Silver-seed gourdcarcpiB0262
CSPI06G05500Silver-seed gourdcarcpiB0653
CSPI06G05500Silver-seed gourdcarcpiB1118
CSPI06G05500Cucumber (Chinese Long) v3cpicucB335
CSPI06G05500Watermelon (97103) v2cpiwmbB485
CSPI06G05500Watermelon (97103) v2cpiwmbB495
CSPI06G05500Wax gourdcpiwgoB657
CSPI06G05500Wild cucumber (PI 183967)cpicpiB126
CSPI06G05500Wild cucumber (PI 183967)cpicpiB139
CSPI06G05500Cucumber (Gy14) v1cgycpiB391
CSPI06G05500Cucumber (Gy14) v1cgycpiB393
CSPI06G05500Cucumber (Gy14) v1cgycpiB540
CSPI06G05500Cucurbita maxima (Rimu)cmacpiB273
CSPI06G05500Cucurbita maxima (Rimu)cmacpiB350
CSPI06G05500Cucurbita maxima (Rimu)cmacpiB386
CSPI06G05500Cucurbita maxima (Rimu)cmacpiB856
CSPI06G05500Cucurbita maxima (Rimu)cmacpiB915