CSPI06G01880 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCCTCGTCTAATTCGTTTATTATCAGATGACTGCCATTCCACTTTTTTAATCTGTACCCGCAACGCACCGATTCAAATCCTCTTCCGGGCCTCTCTCCTCTTTTCTATAGCCCATTTCAACTATTAAGGCCCAAAAGCCCATTAGAAGTTACAAACAAAACCCTAATCCTAATTAGCGTTCCCTTTTCCGCGATTTCTCTCTCACGTTCCCCAATTCTGCTCTCCCTTCACCGCCAATTTCAAAGTTTCCGACGCCGATCACCCCTTTCTCCGCCGCCCTCAAAGTTGTTCGATCCCCCTCCGTAAGTGGAGATGCGCATAAGCTAGGCCAGACACTCGCGATACCAAAATGATCTGAAAGCTCGTTTGTTCTTCATGGTGAATCTTTTTCTCTTTTGTTGTGTCATGTAGTTTTTAACCTTAGTTTACAGTATGAAAAATTAGGCTAACTCCTTTAATCGCCGTATTAGATCTCTTATTAGAGATGGGATCGGAGAAGGATGAGCAATTTGCCATGTTTGAAGAGAAGGTTAAACGGACTGTGTATGTTGATAATCTCTCTCTTCAAGTAACTGAGCCTGTTTTGAGAACTGCTTTAGATCAGTTTGGGACTGTGGTCAGTGTCCATTTTATTCCAAATTACACGGAGCCAATTAACAGCTCTCAATGTGCTCTAGTGGAAATGAAGGATTCGAAGGAGGCGAAATCTGTAATCACCGTTATAGCTCAATTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCTCGCCCTGCCGAAGTAGAAATGTTTGATGATCGCCCTGTAAAGCCTGGTAGAAAGATTAGCTTTAGATGGCTGGAAAGTGATGATCCTGATTTTGAAGTGGCCAGACAAATCAAGCGTCTTTCTAAGAAACATGTGGCTGAAGCTGCATTTTTGGTCAAGGTATGAGTTTCAGAATCTCAGTCTCTCAACTTGAATTTCAATTTAGTGCTTAAATAATTGCATTTTGTTAACTTTAATTTGTGATTCTTAGGCGATGGTTGATATTTATTAGATGGATGTTTGTTAATTTAGCACAACGTGGCATGGCTGACAAAAGTAAGAGGCTAGTTAGACAAATGAAGGGACAAATTCAATATGCCTTATGGATTCTTGTCACTGGATTCTGTTTATAGCTATCCTCTCTCTTGTCATCCGTTTATTTGCCATATTCTGCTAAATCAATCTATTACCTTTTGTTTATCTACTAAACATATCATCGAAAGTTAATGTATGTAATTAGATCTTTTTAAGTTTTAAAATTAAATAAACACGACCATTAACCTTCGGACTTGATTTTTAATTTGGTCAAATTATAAGATTGGTTTCACAACTTTGAGAATGTCTCTTGATTATCTAGTTCGTATTAGTGTTGTTGATGCGTAGCCGGCGCTGGCCAGAAGGGATCACCTTTTGCACCTTTTAGTTGCCTTGAACATATGTGCAAGGTGACGCAGATGCTCGCCTTGTTCAATTGTTCAACTTAGTTTTTTACAAAAGGAAAAAAATTCTTCTCCAATACTTTGATAAGAGAAAGTATAGAAGTTTGTAAAGGTAGAATTCAAAAAATCAAAGGAAGGAAGAAAATTTGAAGAAAAAAAGAGTGAAAGAAGTAGAAACAAAATTGAAGCGCTCTTTTCATACATTCCTAGAATTTTCTTTCAAGCTTTCCTTTAAGAATTTATAATTTAATATTATTATTTATTATTTTATTAACTGCATCCCGCTTCGCTCCAATAATAGACTCTTTTTCATACATTCCTAGAGTTTATAACCTTTAGGTGGCACCTTGGATCTTGAAAACACCGATTCATATAATTTTAAATCTCTTTGGTAGGTCTCTTCAACTTTTCTGTTCTGTTTTATAGGTGTCTACTGTGAATCCCATATTCCCATAGGTTTAGGTTTCATGCTTTTGCACCAAACACCTTTGAAAATTGAAACCAACCGATATGGATACCGGCGTACTGCTCAAGTAAGTATTAAGCTAGTGGAGTTAACAACAGATTTATTAGGCTTGAAGTTAAAATGTTCGACACTTATTGAAGTACAAACATTAAATAGATACAAACTTGGAAGTGGGGAATCTATTAGAAAACCTTTAGAATACAGGGCTAAGTAAATGGATTCTAAAAGTTTAGGGATGATATTGGTAATTTGGTCTCGGTCAGATAATTCTTAACGCTGAAAAGTGGTTTGTCCAATTTCTTTGCAGCAACATATGGCGGAAGAGGAAAAGCTTGCAAAGCAGCAACAAGAAACACTGAAAGGAAACTACAAGAAATATGAGATTGTAGATAGTGTAATGGCCGATGGAACTGCCCGCAGGTTAGCAAAACATTATAATATGCGAATTTCAGATGATTAATTAAAGCCTCTGAAGCTTTGCTTTTGTAACCTCTTAATGCCACTGATTTTTACATGTAAATTTGTACAAATTGTCGTTTATATGTATGAATAGAGATGAATTACAGACTTTTGTGATTTAGAGGGAGAAAAATAGATACTTGGTATAATACTCCTAACAACAAGG ATGGGATCGGAGAAGGATGAGCAATTTGCCATGTTTGAAGAGAAGGTTAAACGGACTGTGTATGTTGATAATCTCTCTCTTCAAGTAACTGAGCCTGTTTTGAGAACTGCTTTAGATCAGTTTGGGACTGTGGTCAGTGTCCATTTTATTCCAAATTACACGGAGCCAATTAACAGCTCTCAATGTGCTCTAGTGGAAATGAAGGATTCGAAGGAGGCGAAATCTGTAATCACCGTTATAGCTCAATTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCTCGCCCTGCCGAAGTAGAAATGTTTGATGATCGCCCTGTAAAGCCTGGTAGAAAGATTAGCTTTAGATGGCTGGAAAGTGATGATCCTGATTTTGAAGTGGCCAGACAAATCAAGCGTCTTTCTAAGAAACATGTGGCTGAAGCTGCATTTTTGGTCAAGCAACATATGGCGGAAGAGGAAAAGCTTGCAAAGCAGCAACAAGAAACACTGAAAGGAAACTACAAGAAATATGAGATTGTAGATAGTGTAATGGCCGATGGAACTGCCCGCAGGTTAGCAAAACATTATAATATGCGAATTTCAGATGATTAA ATGGGATCGGAGAAGGATGAGCAATTTGCCATGTTTGAAGAGAAGGTTAAACGGACTGTGTATGTTGATAATCTCTCTCTTCAAGTAACTGAGCCTGTTTTGAGAACTGCTTTAGATCAGTTTGGGACTGTGGTCAGTGTCCATTTTATTCCAAATTACACGGAGCCAATTAACAGCTCTCAATGTGCTCTAGTGGAAATGAAGGATTCGAAGGAGGCGAAATCTGTAATCACCGTTATAGCTCAATTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCTCGCCCTGCCGAAGTAGAAATGTTTGATGATCGCCCTGTAAAGCCTGGTAGAAAGATTAGCTTTAGATGGCTGGAAAGTGATGATCCTGATTTTGAAGTGGCCAGACAAATCAAGCGTCTTTCTAAGAAACATGTGGCTGAAGCTGCATTTTTGGTCAAGCAACATATGGCGGAAGAGGAAAAGCTTGCAAAGCAGCAACAAGAAACACTGAAAGGAAACTACAAGAAATATGAGATTGTAGATAGTGTAATGGCCGATGGAACTGCCCGCAGGTTAGCAAAACATTATAATATGCGAATTTCAGATGATTAA
BLAST of CSPI06G01880 vs. TrEMBL
Match: A0A0A0KAE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G013320 PE=4 SV=1) HSP 1 Score: 390.2 bits (1001), Expect = 1.5e-105 Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 1
BLAST of CSPI06G01880 vs. TrEMBL
Match: A0A067L601_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20842 PE=4 SV=1) HSP 1 Score: 277.3 bits (708), Expect = 1.4e-71 Identity = 136/199 (68.34%), Postives = 166/199 (83.42%), Query Frame = 1
BLAST of CSPI06G01880 vs. TrEMBL
Match: D7SWK8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g03120 PE=4 SV=1) HSP 1 Score: 273.5 bits (698), Expect = 2.1e-70 Identity = 128/199 (64.32%), Postives = 163/199 (81.91%), Query Frame = 1
BLAST of CSPI06G01880 vs. TrEMBL
Match: A0A061EIN5_THECC (RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_020046 PE=4 SV=1) HSP 1 Score: 271.2 bits (692), Expect = 1.0e-69 Identity = 132/199 (66.33%), Postives = 163/199 (81.91%), Query Frame = 1
BLAST of CSPI06G01880 vs. TrEMBL
Match: V4TX22_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022331mg PE=4 SV=1) HSP 1 Score: 270.8 bits (691), Expect = 1.3e-69 Identity = 130/199 (65.33%), Postives = 167/199 (83.92%), Query Frame = 1
BLAST of CSPI06G01880 vs. TAIR10
Match: AT1G05970.2 (AT1G05970.2 RNA-binding (RRM/RBD/RNP motifs) family protein) HSP 1 Score: 191.0 bits (484), Expect = 6.9e-49 Identity = 92/195 (47.18%), Postives = 140/195 (71.79%), Query Frame = 1
BLAST of CSPI06G01880 vs. NCBI nr
Match: gi|449441282|ref|XP_004138411.1| (PREDICTED: uncharacterized protein LOC101221287 [Cucumis sativus]) HSP 1 Score: 390.2 bits (1001), Expect = 2.2e-105 Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 1
BLAST of CSPI06G01880 vs. NCBI nr
Match: gi|659081732|ref|XP_008441485.1| (PREDICTED: uncharacterized protein LOC103485592 [Cucumis melo]) HSP 1 Score: 371.7 bits (953), Expect = 8.0e-100 Identity = 187/199 (93.97%), Postives = 195/199 (97.99%), Query Frame = 1
BLAST of CSPI06G01880 vs. NCBI nr
Match: gi|802554907|ref|XP_012065154.1| (PREDICTED: paraspeckle component 1 [Jatropha curcas]) HSP 1 Score: 277.3 bits (708), Expect = 2.1e-71 Identity = 136/199 (68.34%), Postives = 166/199 (83.42%), Query Frame = 1
BLAST of CSPI06G01880 vs. NCBI nr
Match: gi|225438281|ref|XP_002269083.1| (PREDICTED: uncharacterized protein LOC100255901 [Vitis vinifera]) HSP 1 Score: 273.5 bits (698), Expect = 3.0e-70 Identity = 128/199 (64.32%), Postives = 163/199 (81.91%), Query Frame = 1
BLAST of CSPI06G01880 vs. NCBI nr
Match: gi|296082652|emb|CBI21657.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 273.5 bits (698), Expect = 3.0e-70 Identity = 128/199 (64.32%), Postives = 163/199 (81.91%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |