CSPI01G19800 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G19800
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 15530871 .. 15531394 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATCAGCCTTCTCCTTTTACTTACCTTTCCCTTTTCGTCTCTTTTTGTGCTCATCTCATTTCTTAATCGAGGCTAACAAAATAAACAATGGCTAGCATTTCTTCAGAGCTCTTTCAATCCAATCTCAAGAACAGTCATGGAGATCGCTGCCACGGTGGTAAGAACTACCTGGACCCGCCTCCTCCTCCTCCTCTTCCTCTTCCTCTTCCTCTTCCTCAACCCCATATCGATATCGGCGGAGGTGGAAGTATAGTTGCAGATTACGACTTTGCTCCGGCAGCATGAATAAAGAGAGATCAAATACATGATTACAAGATAACATAATGTCTCTTTGGCTGATAAGTTTGAAGTAAGAGCGGTAATAAATATTTTTTATCTTCTGAGTTATGTTTAGATTGACTAGCCATATATTGTATTAGATATATTTTAACTATTTTTGGAACCCAAAAGAGTGTGGAAATAATTGATGAGTAAAGAGTATGAGATTAAAGATTATTTCCCTTTTATTTTCAGGGGTTTTATTT

mRNA sequence

ATGGCTAGCATTTCTTCAGAGCTCTTTCAATCCAATCTCAAGAACAGTCATGGAGATCGCTGCCACGGTGGTAAGAACTACCTGGACCCGCCTCCTCCTCCTCCTCTTCCTCTTCCTCTTCCTCTTCCTCAACCCCATATCGATATCGGCGGAGGTGGAAGTATAGTTGCAGATTACGACTTTGCTCCGGCAGCATGA

Coding sequence (CDS)

ATGGCTAGCATTTCTTCAGAGCTCTTTCAATCCAATCTCAAGAACAGTCATGGAGATCGCTGCCACGGTGGTAAGAACTACCTGGACCCGCCTCCTCCTCCTCCTCTTCCTCTTCCTCTTCCTCTTCCTCAACCCCATATCGATATCGGCGGAGGTGGAAGTATAGTTGCAGATTACGACTTTGCTCCGGCAGCATGA
Homology
[Close]
BLAST of CSPI01G19800 vs. TrEMBL
Match: A0A0A0LUD7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G409740 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.2e-28
Identity = 63/65 (96.92%), Postives = 63/65 (96.92%), Query Frame = 1 

Query: 1  MASISSELFQSNLKNSHGDRCHGGKNYLDPPPPPPLPLPLPLPQPHIDIGGGGSIVADYD 60
          MASISSELFQSNLKNSHGDRCHGGKNYLDPPPPP  PLPLPLPQPHIDIGGGGSIVADYD
Sbjct: 1  MASISSELFQSNLKNSHGDRCHGGKNYLDPPPPP--PLPLPLPQPHIDIGGGGSIVADYD 60

Query: 61 FAPAA 66
          FAPAA
Sbjct: 61 FAPAA 63

[Close]
BLAST of CSPI01G19800 vs. NCBI nr
Match: gi|700210307|gb|KGN65403.1| (hypothetical protein Csa_1G409740 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 6.0e-28
Identity = 63/65 (96.92%), Postives = 63/65 (96.92%), Query Frame = 1 

Query: 1  MASISSELFQSNLKNSHGDRCHGGKNYLDPPPPPPLPLPLPLPQPHIDIGGGGSIVADYD 60
          MASISSELFQSNLKNSHGDRCHGGKNYLDPPPPP  PLPLPLPQPHIDIGGGGSIVADYD
Sbjct: 1  MASISSELFQSNLKNSHGDRCHGGKNYLDPPPPP--PLPLPLPQPHIDIGGGGSIVADYD 60

Query: 61 FAPAA 66
          FAPAA
Sbjct: 61 FAPAA 63

The following BLAST results are available for this feature:
BLAST of CSPI01G19800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G19800 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUD7_CUCSA4.2e-2896.92Uncharacterized protein OS=Cucumis sativus GN=Csa_1G409740 PE=4 SV=1[more]
BLAST of CSPI01G19800 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G19800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210307|gb|KGN65403.1|6.0e-2896.92hypothetical protein Csa_1G409740 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G19800.1CSPI01G19800.1mRNA