Cla011272 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla011272
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Deaminase (AHRD V1 ***- C7TBQ1_LACRG); contains Interpro domain(s) IPR016193 Cytidine deaminase-like
Location	Chr3 : 27012821 .. 27015448 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGATTCTTCTACTGGTAATCGCCGCAATCTCTTCATTCCGTTGATTTCCAATCTGTTTCTCCTGCTTTTGAATCATTTCTTGTTTTACTCTGATCTCGCATTCCCTTTTGCACGAATGTGAATTGGAGGATTTGGGTTTTCCCCCCTTTTTTGTTCTTCTTGTTCTAGTACATGTTCTGTAATATCATGTTTTTAGGATTTTTCACACCCGATCTCTCTGTCTTTTCTGTTTTGACTTTGCATGGTGTCTTTGATTCCGCATCGGGAGGGTGTTTCTCTGTTTTCATGATTTGGTGTTTCTTAGGAATCGTTGTTTGATACCAGAGGATAGAAATCGAAGGGCGTTTTGGTGTTAATTTGTGAAATTTGGAGGAATTTTAGATTTGATGATGATGCTTTTGGAATTTCCAGACATGGGTCAATGATGAACTATTTTCTAATTTTTACGATTGTCTCTCTCTTTCTCTTTCTTTATTTTTGTTTGTTGTAAATGGATCTGATTCTGAATCGTTATGTTGTCCTTTTTTTTTTTTTTTTTTCTTTTTTTATATTCATCTCCCTATATTTGGGGTGTATATGCGTTCTAGATTCAATCTGGAAGATTAATGGAATAAGATTCATATCATTTTGTTTTTCTTTCCTTTTATTGAAGTATCGTAATTAATGGGTTTGTAATTTTGCCTTTCTTCCTTATTTTCAGTGGTGGAAGCTATAGACGGAACTCTCTCTGTAGCATCTGCATTTGGTTGTCATCAAGAAGGTACTAAGAAAACAACCCACTTTCCATTTGTTTATTTATTTATTTATTTTTTGAATATTCCCTTTTCCTTCCTCCCATCAAAAGTCAAGGGACAATAGATCCTTTTTCATTTTAAATTTTCTTTTAGTATTAGTTTAGGGTCCTTTAAATGTATATATCATTATCAAAACTGTTCTTGTTTTTGTCTATCTTGGATTGGTCTAAATTTATGCAATTTACATTGGCCTACAAATCAGCGAACTTCTAGAATATTGATTCCTTCTCTTCATGGTTATGACTTCTTATAAGTCTGGTATAATCTATTTTGCCACTGTAATATTTTTTACTTGAGATTCCATTCCTAAACAATCCAGTGTCTGGAAGCAAGATTTTGCTTTGCAGAGAAATTTTTGGTTTCAGATTTATTCTTGTTTTCTTCTATTTTTTTGGGTCAAATTTTTGTGTATTGGCCTTCTTTTTCTAAAATTTGTTCTTGAATTCTCTTACAGTTCAATCTAGATAGTAGATACAATTTCCCTTAATAGCTGGCCACTGCCTTGCTACAAGCGTTTTGTTCATTGTTTAGTTTGGAGTCTAAATGAACAAAATGGTCCAAACTTTTATGATGAAGTGTTAACAATATTCCATTTTTGTCTTCATGTTTAAACCAGCTGTACAAGACAGAGACCACAAGTTCTTGACACAAGCAGTTGAAGAGGCTTACAAAGGAGTTGAGTGTGGAGATGGAGGTCCTTTTGGAGCAGTCGTTGTTCGTAACGATGAAGTAGTTGTGAGCTGTCATAACATGGTTAGAAGAAACACTGACCCTACAGCACATGCTGAAGTCACTGCAGTTAGGGAGGTTGGCACAAAATTTTAGCTCAATGCTTGTTGTTTCTACTCATTTTATTATGTGCACAGTTTTTCTTGAAGTACTTTGGAGAAGAAATTTGATTTTGACATTGAAAGTGAAAAAGTTGTTTGATTATGCTTTTCAAAAAAAAAAAAAGGTTGTTTGATCATGAAATTTTGTTTTCCTCAGTCAAATGAGTATCAAGATTGATAGAACTGATTGAGGCCACAACATCCTTCTGTCTTAGATCTACACCTCCACCTCACAAATTTGAAGTTTTGGAGAAGCTATTGTACACAATACTTAATTTTTTCCTTTATGAATTTTATTTGCTATGTGAATTGTTCATAGCATACATGAACCAGGATTTCTTTCCAAAAGCTTTGATTTCTTTTCTCATCCATGTATGCTATTTGAGTCCATATTGATTTCTCTTTATCGTGCTGAACTCAACAGTTTCTTCGTTATTTCTGCGAAAATTTGGACACTGAAGTCGTGTATTCTGTGGATAATCCTAGTATTTGAAATATGTCATATTGTGTGCTCTTGAAAGCCTCTTCACTTGATACTTTTAGGCTAAACCATATGGATTCACTTACATTTTTATTGTGCTATTCTACTCTAGGCTTGCAAAAAGCTGGGTAAAATCGAACTTTCAGACTGTGAAATCTATGCATCTTGTGAGCCCTGTCCGATGTGCTTTGGCGCCATCCATCTTTCAAGAATTAAGGTTTGTTGTCAAAACTCTCTGTATCTAACTCTTTAACCGTCGTAGGAATCAGCTCATCCGGTTTTCTTCTCGGTTGCATTTCGTTTATTTGTTATCTTTTGTGTTTAAACAGAGATTGGTTTATGGAGCCGAAGCAGAAGCTGCAATTGCAGTAGGATTTGATGATTTCATTGCTGATGCCATTAGGGGCACTGGGTTTTATCAGAAAGCTCATTTGGAAATCAAGAAAGCAGATGGGAATGGTGCTGTCATTGCTGAGCAAGTATTTGAGAAAACAAAGGAAAAATTTCAATTGTATTGA

mRNA sequence

ATGGCAGATTCTTCTACTGTGGTGGAAGCTATAGACGGAACTCTCTCTGTAGCATCTGCATTTGGTTGTCATCAAGAAGCTGTACAAGACAGAGACCACAAGTTCTTGACACAAGCAGTTGAAGAGGCTTACAAAGGAGTTGAGTGTGGAGATGGAGGTCCTTTTGGAGCAGTCGTTGTTCGTAACGATGAAGTAGTTGTGAGCTGTCATAACATGGTTAGAAGAAACACTGACCCTACAGCACATGCTGAAGTCACTGCAGTTAGGGAGGCTTGCAAAAAGCTGGGTAAAATCGAACTTTCAGACTGTGAAATCTATGCATCTTGTGAGCCCTGTCCGATGTGCTTTGGCGCCATCCATCTTTCAAGAATTAAGAGATTGGTTTATGGAGCCGAAGCAGAAGCTGCAATTGCAGTAGGATTTGATGATTTCATTGCTGATGCCATTAGGGGCACTGGGTTTTATCAGAAAGCTCATTTGGAAATCAAGAAAGCAGATGGGAATGGTGCTGTCATTGCTGAGCAAGTATTTGAGAAAACAAAGGAAAAATTTCAATTGTATTGA

Coding sequence (CDS)

ATGGCAGATTCTTCTACTGTGGTGGAAGCTATAGACGGAACTCTCTCTGTAGCATCTGCATTTGGTTGTCATCAAGAAGCTGTACAAGACAGAGACCACAAGTTCTTGACACAAGCAGTTGAAGAGGCTTACAAAGGAGTTGAGTGTGGAGATGGAGGTCCTTTTGGAGCAGTCGTTGTTCGTAACGATGAAGTAGTTGTGAGCTGTCATAACATGGTTAGAAGAAACACTGACCCTACAGCACATGCTGAAGTCACTGCAGTTAGGGAGGCTTGCAAAAAGCTGGGTAAAATCGAACTTTCAGACTGTGAAATCTATGCATCTTGTGAGCCCTGTCCGATGTGCTTTGGCGCCATCCATCTTTCAAGAATTAAGAGATTGGTTTATGGAGCCGAAGCAGAAGCTGCAATTGCAGTAGGATTTGATGATTTCATTGCTGATGCCATTAGGGGCACTGGGTTTTATCAGAAAGCTCATTTGGAAATCAAGAAAGCAGATGGGAATGGTGCTGTCATTGCTGAGCAAGTATTTGAGAAAACAAAGGAAAAATTTCAATTGTATTGA

Protein sequence

MADSSTVVEAIDGTLSVASAFGCHQEAVQDRDHKFLTQAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVRRNTDPTAHAEVTAVREACKKLGKIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAEAEAAIAVGFDDFIADAIRGTGFYQKAHLEIKKADGNGAVIAEQVFEKTKEKFQLY

Homology

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BLAST of Cla011272 vs. Swiss-Prot
Match: GUAD_BACSU (Guanine deaminase OS=Bacillus subtilis (strain 168) GN=guaD PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.0e-27
Identity = 59/109 (54.13%), Postives = 72/109 (66.06%), Query Frame = 1


Query: 35  FLTQAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVRRNTDPTAHAEVTAVREACKK 94
           FL +AV  A +GV  G GGPFGAV+V++  ++    N V  + DPTAHAEVTA+R+ACK 
Sbjct: 6   FLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKV 65

Query: 95  LGKIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAEAEAAIAVGFDD 144
           LG  +L DC +Y SCEPCPMC GAI+ +R K + Y AE   A   GFDD
Sbjct: 66  LGAYQLDDCILYTSCEPCPMCLGAIYWARPKAVFYAAEHTDAAEAGFDD 114

[Close]

BLAST of Cla011272 vs. Swiss-Prot
Match: TADA_STAAM (tRNA-specific adenosine deaminase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=tadA PE=1 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.9e-18
Identity = 46/101 (45.54%), Postives = 60/101 (59.41%), Query Frame = 1


Query: 32  DHKFLTQAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVRRNTDPTAHAEVTAVREA 91
           D  F+T A+EEA K  + G+  P GA++ ++DEV+   HN+      PTAHAE  A+  A
Sbjct: 4   DIYFMTLAIEEAKKAAQLGEV-PIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERA 63

Query: 92  CKKLGKIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAE 133
            K LG   L  C +Y + EPC MC G I +SRI R+VYGA+
Sbjct: 64  AKVLGSWRLEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGAD 103

[Close]

BLAST of Cla011272 vs. Swiss-Prot
Match: TADA_AQUAE (tRNA-specific adenosine deaminase OS=Aquifex aeolicus (strain VF5) GN=tadA PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.1e-17
Identity = 42/97 (43.30%), Postives = 62/97 (63.92%), Query Frame = 1


Query: 35  FLTQAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVRRNTDPTAHAEVTAVREACKK 94
           FL  A+ EA +  E G+  P GA++V+  E++   HN V    DPTAHAE+ A++EAC++
Sbjct: 6   FLKVALREAKRAFEKGEV-PVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRR 65

Query: 95  LGKIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGA 132
           L    L  CE+Y + EPC MC  A+ LSRI+++++ A
Sbjct: 66  LNTKYLEGCELYVTLEPCIMCSYALVLSRIEKVIFSA 101

[Close]

BLAST of Cla011272 vs. Swiss-Prot
Match: TADA_BACSU (tRNA-specific adenosine deaminase OS=Bacillus subtilis (strain 168) GN=tadA PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.0e-16
Identity = 42/101 (41.58%), Postives = 61/101 (60.40%), Query Frame = 1


Query: 31  RDHKFLTQAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVRRNTDPTAHAEVTAVRE 90
           +D  ++ +A++EA K  E G+  P GAV+V N E++   HN+        AHAE+  + E
Sbjct: 3   QDELYMKEAIKEAKKAEEKGEV-PIGAVLVINGEIIARAHNLRETEQRSIAHAEMLVIDE 62

Query: 91  ACKKLGKIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGA 132
           ACK LG   L    +Y + EPCPMC GA+ LSR++++V+GA
Sbjct: 63  ACKALGTWRLEGATLYVTLEPCPMCAGAVVLSRVEKVVFGA 102

[Close]

BLAST of Cla011272 vs. Swiss-Prot
Match: TADA_ARATH (tRNA(adenine(34)) deaminase, chloroplastic OS=Arabidopsis thaliana GN=TADA PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.2e-14
Identity = 40/100 (40.00%), Postives = 58/100 (58.00%), Query Frame = 1


Query: 32   DHKFLTQAVEEAYKGVECGDGGPFGAVVVRNDEVVVSCHNMVRRNTDPTAHAEVTAVREA 91
            D  F+ +A+ EA K  +  +  P GAV+V + +++   +N+V    D TAHAE+  +RE 
Sbjct: 1110 DEIFMREALVEAKKAADTWEV-PVGAVLVHDGKIIARGYNLVEELRDSTAHAEMICIREG 1169

Query: 92   CKKLGKIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGA 132
             K L    L+D  +Y + EPCPMC GAI  +R+  LV+GA
Sbjct: 1170 SKALRSWRLADTTLYVTLEPCPMCAGAILQARVNTLVWGA 1208

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BLAST of Cla011272 vs. TrEMBL
Match: A0A0A0LZ82_CUCSA (Guanine deaminase OS=Cucumis sativus GN=Csa_1G574840 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 9.9e-99
Identity = 182/187 (97.33%), Postives = 185/187 (98.93%), Query Frame = 1


Query: 1   MADSSTVVEAIDGTLSVASAFGCHQEAVQDRDHKFLTQAVEEAYKGVECGDGGPFGAVVV 60
           MADSSTVVEAIDGT+SVA  FGCHQEAVQDRDHKFLTQAVEEAY+GVECGDGGPFGAVVV
Sbjct: 1   MADSSTVVEAIDGTISVA--FGCHQEAVQDRDHKFLTQAVEEAYQGVECGDGGPFGAVVV 60

Query: 61  RNDEVVVSCHNMVRRNTDPTAHAEVTAVREACKKLGKIELSDCEIYASCEPCPMCFGAIH 120
           RNDEVVVSCHNMVRRNTDPTAHAEVTAVREACKKLGKIELSDCEIYASCEPCPMCFGAIH
Sbjct: 61  RNDEVVVSCHNMVRRNTDPTAHAEVTAVREACKKLGKIELSDCEIYASCEPCPMCFGAIH 120

Query: 121 LSRIKRLVYGAEAEAAIAVGFDDFIADAIRGTGFYQKAHLEIKKADGNGAVIAEQVFEKT 180
           LSRIKRLVYGA+AEAAIAVGFDDFIADAIRGTGFYQKAHLEIKKADGNGAVIAEQVFEKT
Sbjct: 121 LSRIKRLVYGAKAEAAIAVGFDDFIADAIRGTGFYQKAHLEIKKADGNGAVIAEQVFEKT 180

Query: 181 KEKFQLY 188
           KEKFQLY
Sbjct: 181 KEKFQLY 185

[Close]

BLAST of Cla011272 vs. TrEMBL
Match: A1YLY2_MAIZE (Cytidine/deoxycytidylate deaminase family protein OS=Zea mays GN=CDA1-En PE=2 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 9.9e-91
Identity = 162/185 (87.57%), Postives = 179/185 (96.76%), Query Frame = 1


Query: 3   DSSTVVEAIDGTLSVASAFGCHQEAVQDRDHKFLTQAVEEAYKGVECGDGGPFGAVVVRN 62
           D + VVE+ DGT+SVASAF  HQEAVQDRDHKFLT+AVEEAY+GV+CGDGGPFGAVVVRN
Sbjct: 2   DEAQVVESKDGTISVASAFVAHQEAVQDRDHKFLTKAVEEAYRGVDCGDGGPFGAVVVRN 61

Query: 63  DEVVVSCHNMVRRNTDPTAHAEVTAVREACKKLGKIELSDCEIYASCEPCPMCFGAIHLS 122
           DEVVVSCHNMV ++TDPTAHAEVTA+REACKKLGKIELSDCEIYASCEPCPMCFGA+HLS
Sbjct: 62  DEVVVSCHNMVLKHTDPTAHAEVTAIREACKKLGKIELSDCEIYASCEPCPMCFGAVHLS 121

Query: 123 RIKRLVYGAEAEAAIAVGFDDFIADAIRGTGFYQKAHLEIKKADGNGAVIAEQVFEKTKE 182
           RIKRLVYGA+AEAAIA+GFDDFIADA+RGTGFYQKA++EIKKADGNGA+IAEQVFEKTKE
Sbjct: 122 RIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKANMEIKKADGNGALIAEQVFEKTKE 181

Query: 183 KFQLY 188
           KFQ+Y
Sbjct: 182 KFQMY 186

[Close]

BLAST of Cla011272 vs. TrEMBL
Match: A1YLY6_MAIZE (Putative cytidine deaminase OS=Zea mays GN=CDA1-En PE=2 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 3.8e-90
Identity = 161/185 (87.03%), Postives = 178/185 (96.22%), Query Frame = 1


Query: 3   DSSTVVEAIDGTLSVASAFGCHQEAVQDRDHKFLTQAVEEAYKGVECGDGGPFGAVVVRN 62
           D + VVE+ DGT+SVASAF  HQEAVQDRDHKFLT+AVEEAY+GV+CGDGGPFGAVVV N
Sbjct: 2   DEAQVVESKDGTISVASAFAAHQEAVQDRDHKFLTKAVEEAYRGVDCGDGGPFGAVVVCN 61

Query: 63  DEVVVSCHNMVRRNTDPTAHAEVTAVREACKKLGKIELSDCEIYASCEPCPMCFGAIHLS 122
           DEVVVSCHNMV ++TDPTAHAEVTA+REACKKLGKIELSDCEIYASCEPCPMCFGA+HLS
Sbjct: 62  DEVVVSCHNMVLKHTDPTAHAEVTAIREACKKLGKIELSDCEIYASCEPCPMCFGAVHLS 121

Query: 123 RIKRLVYGAEAEAAIAVGFDDFIADAIRGTGFYQKAHLEIKKADGNGAVIAEQVFEKTKE 182
           RIKRLVYGA+AEAAIA+GFDDFIADA+RGTGFYQKA++EIKKADGNGA+IAEQVFEKTKE
Sbjct: 122 RIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKANMEIKKADGNGALIAEQVFEKTKE 181

Query: 183 KFQLY 188
           KFQ+Y
Sbjct: 182 KFQMY 186

[Close]

BLAST of Cla011272 vs. TrEMBL
Match: A0A096R949_MAIZE (Uncharacterized protein OS=Zea mays PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 1.4e-89
Identity = 160/180 (88.89%), Postives = 176/180 (97.78%), Query Frame = 1


Query: 8   VEAIDGTLSVASAFGCHQEAVQDRDHKFLTQAVEEAYKGVECGDGGPFGAVVVRNDEVVV 67
           VE+ DGT+SVASAF  HQEAVQDRDHKFLT+AVEEAY+GV+CGDGGPFGAVVVRNDEVVV
Sbjct: 7   VESKDGTISVASAFVAHQEAVQDRDHKFLTKAVEEAYRGVDCGDGGPFGAVVVRNDEVVV 66

Query: 68  SCHNMVRRNTDPTAHAEVTAVREACKKLGKIELSDCEIYASCEPCPMCFGAIHLSRIKRL 127
           SCHNMV ++TDPTAHAEVTA+REACKKLGKIELSDCEIYASCEPCPMCFGA+HLSRIKRL
Sbjct: 67  SCHNMVLKHTDPTAHAEVTAIREACKKLGKIELSDCEIYASCEPCPMCFGAVHLSRIKRL 126

Query: 128 VYGAEAEAAIAVGFDDFIADAIRGTGFYQKAHLEIKKADGNGAVIAEQVFEKTKEKFQLY 187
           VYGA+AEAAIA+GFDDFIADA+RGTGFYQKA++EIKKADGNGA+IAEQVFEKTKEKFQ+Y
Sbjct: 127 VYGAKAEAAIAIGFDDFIADALRGTGFYQKANMEIKKADGNGALIAEQVFEKTKEKFQMY 186

[Close]

BLAST of Cla011272 vs. TrEMBL
Match: A1YLY8_MAIZE (Putative cytidine deaminase OS=Zea mays GN=CDA2-En PE=2 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 1.4e-89
Identity = 161/185 (87.03%), Postives = 178/185 (96.22%), Query Frame = 1


Query: 3   DSSTVVEAIDGTLSVASAFGCHQEAVQDRDHKFLTQAVEEAYKGVECGDGGPFGAVVVRN 62
           D + VVE+ DGT+SVASAF   QEAVQD+DHKFLT+AVEEAY+GV+CGDGGPFGAVVVRN
Sbjct: 2   DEAQVVESKDGTISVASAFAGFQEAVQDKDHKFLTKAVEEAYRGVDCGDGGPFGAVVVRN 61

Query: 63  DEVVVSCHNMVRRNTDPTAHAEVTAVREACKKLGKIELSDCEIYASCEPCPMCFGAIHLS 122
           DEVVVSCHNMV ++TDPTAHAEVTA+REACKKLGKIELSDCEIYASCEPCPMCFGA+HLS
Sbjct: 62  DEVVVSCHNMVLKHTDPTAHAEVTAIREACKKLGKIELSDCEIYASCEPCPMCFGAVHLS 121

Query: 123 RIKRLVYGAEAEAAIAVGFDDFIADAIRGTGFYQKAHLEIKKADGNGAVIAEQVFEKTKE 182
           RIKRLVYGA+AEAAIA+GFDDFIADA+RGTGFYQKA+LEIKKADGNGA+IAEQVFEKTKE
Sbjct: 122 RIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKANLEIKKADGNGALIAEQVFEKTKE 181

Query: 183 KFQLY 188
           KFQ+Y
Sbjct: 182 KFQMY 186

[Close]

BLAST of Cla011272 vs. NCBI nr
Match: gi|659099781|ref|XP_008450773.1| (PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic [Cucumis melo])

HSP 1 Score: 375.6 bits (963), Expect = 5.2e-101
Identity = 184/187 (98.40%), Postives = 187/187 (100.00%), Query Frame = 1


Query: 1   MADSSTVVEAIDGTLSVASAFGCHQEAVQDRDHKFLTQAVEEAYKGVECGDGGPFGAVVV 60
           MADSSTVVEAIDGT+SVASAFGCHQEAVQDRDHKFLTQAVEEAY+GVECGDGGPFGAVVV
Sbjct: 1   MADSSTVVEAIDGTISVASAFGCHQEAVQDRDHKFLTQAVEEAYQGVECGDGGPFGAVVV 60

Query: 61  RNDEVVVSCHNMVRRNTDPTAHAEVTAVREACKKLGKIELSDCEIYASCEPCPMCFGAIH 120
           RNDEVVVSCHNMVRRNTDPTAHAEVTAVREACKKLGKIELSDCEIYASCEPCPMCFGAIH
Sbjct: 61  RNDEVVVSCHNMVRRNTDPTAHAEVTAVREACKKLGKIELSDCEIYASCEPCPMCFGAIH 120

Query: 121 LSRIKRLVYGAEAEAAIAVGFDDFIADAIRGTGFYQKAHLEIKKADGNGAVIAEQVFEKT 180
           LSRIKRLVYGA+AEAAIAVGFDDFIADAIRGTGFYQKAHLEIKKADGNGAVIAEQVFEKT
Sbjct: 121 LSRIKRLVYGAKAEAAIAVGFDDFIADAIRGTGFYQKAHLEIKKADGNGAVIAEQVFEKT 180

Query: 181 KEKFQLY 188
           KEKFQLY
Sbjct: 181 KEKFQLY 187

[Close]

BLAST of Cla011272 vs. NCBI nr
Match: gi|449435770|ref|XP_004135667.1| (PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic [Cucumis sativus])

HSP 1 Score: 367.5 bits (942), Expect = 1.4e-98
Identity = 182/187 (97.33%), Postives = 185/187 (98.93%), Query Frame = 1


Query: 1   MADSSTVVEAIDGTLSVASAFGCHQEAVQDRDHKFLTQAVEEAYKGVECGDGGPFGAVVV 60
           MADSSTVVEAIDGT+SVA  FGCHQEAVQDRDHKFLTQAVEEAY+GVECGDGGPFGAVVV
Sbjct: 1   MADSSTVVEAIDGTISVA--FGCHQEAVQDRDHKFLTQAVEEAYQGVECGDGGPFGAVVV 60

Query: 61  RNDEVVVSCHNMVRRNTDPTAHAEVTAVREACKKLGKIELSDCEIYASCEPCPMCFGAIH 120
           RNDEVVVSCHNMVRRNTDPTAHAEVTAVREACKKLGKIELSDCEIYASCEPCPMCFGAIH
Sbjct: 61  RNDEVVVSCHNMVRRNTDPTAHAEVTAVREACKKLGKIELSDCEIYASCEPCPMCFGAIH 120

Query: 121 LSRIKRLVYGAEAEAAIAVGFDDFIADAIRGTGFYQKAHLEIKKADGNGAVIAEQVFEKT 180
           LSRIKRLVYGA+AEAAIAVGFDDFIADAIRGTGFYQKAHLEIKKADGNGAVIAEQVFEKT
Sbjct: 121 LSRIKRLVYGAKAEAAIAVGFDDFIADAIRGTGFYQKAHLEIKKADGNGAVIAEQVFEKT 180

Query: 181 KEKFQLY 188
           KEKFQLY
Sbjct: 181 KEKFQLY 185

[Close]

BLAST of Cla011272 vs. NCBI nr
Match: gi|162461226|ref|NP_001105963.1| (cytidine deaminase 1 [Zea mays])

HSP 1 Score: 340.9 bits (873), Expect = 1.4e-90
Identity = 162/185 (87.57%), Postives = 179/185 (96.76%), Query Frame = 1


Query: 3   DSSTVVEAIDGTLSVASAFGCHQEAVQDRDHKFLTQAVEEAYKGVECGDGGPFGAVVVRN 62
           D + VVE+ DGT+SVASAF  HQEAVQDRDHKFLT+AVEEAY+GV+CGDGGPFGAVVVRN
Sbjct: 2   DEAQVVESKDGTISVASAFVAHQEAVQDRDHKFLTKAVEEAYRGVDCGDGGPFGAVVVRN 61

Query: 63  DEVVVSCHNMVRRNTDPTAHAEVTAVREACKKLGKIELSDCEIYASCEPCPMCFGAIHLS 122
           DEVVVSCHNMV ++TDPTAHAEVTA+REACKKLGKIELSDCEIYASCEPCPMCFGA+HLS
Sbjct: 62  DEVVVSCHNMVLKHTDPTAHAEVTAIREACKKLGKIELSDCEIYASCEPCPMCFGAVHLS 121

Query: 123 RIKRLVYGAEAEAAIAVGFDDFIADAIRGTGFYQKAHLEIKKADGNGAVIAEQVFEKTKE 182
           RIKRLVYGA+AEAAIA+GFDDFIADA+RGTGFYQKA++EIKKADGNGA+IAEQVFEKTKE
Sbjct: 122 RIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKANMEIKKADGNGALIAEQVFEKTKE 181

Query: 183 KFQLY 188
           KFQ+Y
Sbjct: 182 KFQMY 186

[Close]

BLAST of Cla011272 vs. NCBI nr
Match: gi|119394651|gb|ABL74487.1| (putative cytidine deaminase [Zea mays])

HSP 1 Score: 339.0 bits (868), Expect = 5.4e-90
Identity = 161/185 (87.03%), Postives = 178/185 (96.22%), Query Frame = 1


Query: 3   DSSTVVEAIDGTLSVASAFGCHQEAVQDRDHKFLTQAVEEAYKGVECGDGGPFGAVVVRN 62
           D + VVE+ DGT+SVASAF  HQEAVQDRDHKFLT+AVEEAY+GV+CGDGGPFGAVVV N
Sbjct: 2   DEAQVVESKDGTISVASAFAAHQEAVQDRDHKFLTKAVEEAYRGVDCGDGGPFGAVVVCN 61

Query: 63  DEVVVSCHNMVRRNTDPTAHAEVTAVREACKKLGKIELSDCEIYASCEPCPMCFGAIHLS 122
           DEVVVSCHNMV ++TDPTAHAEVTA+REACKKLGKIELSDCEIYASCEPCPMCFGA+HLS
Sbjct: 62  DEVVVSCHNMVLKHTDPTAHAEVTAIREACKKLGKIELSDCEIYASCEPCPMCFGAVHLS 121

Query: 123 RIKRLVYGAEAEAAIAVGFDDFIADAIRGTGFYQKAHLEIKKADGNGAVIAEQVFEKTKE 182
           RIKRLVYGA+AEAAIA+GFDDFIADA+RGTGFYQKA++EIKKADGNGA+IAEQVFEKTKE
Sbjct: 122 RIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKANMEIKKADGNGALIAEQVFEKTKE 181

Query: 183 KFQLY 188
           KFQ+Y
Sbjct: 182 KFQMY 186

[Close]

BLAST of Cla011272 vs. NCBI nr
Match: gi|743769021|ref|XP_010914791.1| (PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic-like [Elaeis guineensis])

HSP 1 Score: 338.6 bits (867), Expect = 7.1e-90
Identity = 160/185 (86.49%), Postives = 177/185 (95.68%), Query Frame = 1


Query: 3   DSSTVVEAIDGTLSVASAFGCHQEAVQDRDHKFLTQAVEEAYKGVECGDGGPFGAVVVRN 62
           + + VVE+ DGT+SVASAF  HQEAVQDRDHKFL++AVEEAY GV+CGDGGPFGAVVV N
Sbjct: 2   EEAQVVESKDGTISVASAFSGHQEAVQDRDHKFLSKAVEEAYHGVDCGDGGPFGAVVVHN 61

Query: 63  DEVVVSCHNMVRRNTDPTAHAEVTAVREACKKLGKIELSDCEIYASCEPCPMCFGAIHLS 122
           DE+VVSCHNMV +NTDPTAHAEVTA+REAC+KLGKIELSDCEIYASCEPCPMCFGAIHLS
Sbjct: 62  DEIVVSCHNMVLKNTDPTAHAEVTAIREACQKLGKIELSDCEIYASCEPCPMCFGAIHLS 121

Query: 123 RIKRLVYGAEAEAAIAVGFDDFIADAIRGTGFYQKAHLEIKKADGNGAVIAEQVFEKTKE 182
           RIKRLVYGA+AEAAIA+GFDDFIADA+RGTGFYQKAHLEIK+ADGNGA+IAEQVFEKTKE
Sbjct: 122 RIKRLVYGAQAEAAIAIGFDDFIADALRGTGFYQKAHLEIKRADGNGAIIAEQVFEKTKE 181

Query: 183 KFQLY 188
           KFQ+Y
Sbjct: 182 KFQMY 186

The following BLAST results are available for this feature:

BLAST of Cla011272 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GUAD_BACSU	1.0e-27	54.13	Guanine deaminase OS=Bacillus subtilis (strain 168) GN=guaD PE=1 SV=1	[more]
TADA_STAAM	1.9e-18	45.54	tRNA-specific adenosine deaminase OS=Staphylococcus aureus (strain Mu50 / ATCC 7...	[more]
TADA_AQUAE	6.1e-17	43.30	tRNA-specific adenosine deaminase OS=Aquifex aeolicus (strain VF5) GN=tadA PE=1 ...	[more]
TADA_BACSU	1.0e-16	41.58	tRNA-specific adenosine deaminase OS=Bacillus subtilis (strain 168) GN=tadA PE=1...	[more]
TADA_ARATH	8.2e-14	40.00	tRNA(adenine(34)) deaminase, chloroplastic OS=Arabidopsis thaliana GN=TADA PE=1 ...	[more]

BLAST of Cla011272 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LZ82_CUCSA	9.9e-99	97.33	Guanine deaminase OS=Cucumis sativus GN=Csa_1G574840 PE=4 SV=1	[more]
A1YLY2_MAIZE	9.9e-91	87.57	Cytidine/deoxycytidylate deaminase family protein OS=Zea mays GN=CDA1-En PE=2 SV...	[more]
A1YLY6_MAIZE	3.8e-90	87.03	Putative cytidine deaminase OS=Zea mays GN=CDA1-En PE=2 SV=1	[more]
A0A096R949_MAIZE	1.4e-89	88.89	Uncharacterized protein OS=Zea mays PE=4 SV=1	[more]
A1YLY8_MAIZE	1.4e-89	87.03	Putative cytidine deaminase OS=Zea mays GN=CDA2-En PE=2 SV=1	[more]

BLAST of Cla011272 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659099781\|ref\|XP_008450773.1\|	5.2e-101	98.40	PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic [Cucumis melo]	[more]
gi\|449435770\|ref\|XP_004135667.1\|	1.4e-98	97.33	PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic [Cucumis sativus]	[more]
gi\|162461226\|ref\|NP_001105963.1\|	1.4e-90	87.57	cytidine deaminase 1 [Zea mays]	[more]
gi\|119394651\|gb\|ABL74487.1\|	5.4e-90	87.03	putative cytidine deaminase [Zea mays]	[more]
gi\|743769021\|ref\|XP_010914791.1\|	7.1e-90	86.49	PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic-like [Elaeis guineensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002125	CMP_dCMP_dom
IPR016192	APOBEC/CMP_deaminase_Zn-bd
IPR016193	Cytidine_deaminase-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0016787	hydrolase activity
GO:0003824	catalytic activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006152	purine nucleoside catabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008892	guanine deaminase activity
molecular_function	GO:0047974	guanosine deaminase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0016787	hydrolase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU05187	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU11524	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU13141	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU14502	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla011272	Cla011272.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU05187	WMU05187	transcribed_cluster
WMU13141	WMU13141	transcribed_cluster
WMU11524	WMU11524	transcribed_cluster
WMU14502	WMU14502	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002125	Cytidine and deoxycytidylate deaminases, zinc-binding	PFAM	PF00383	dCMP_cyt_deam_1	coord: 31..130 score: 1.6
IPR002125	Cytidine and deoxycytidylate deaminases, zinc-binding	PROFILE	PS51747	CYT_DCMP_DEAMINASES_2	coord: 30..140 score: 23
IPR016192	APOBEC/CMP deaminase, zinc-binding	PROSITE	PS00903	CYT_DCMP_DEAMINASES_1	coord: 82..119 scor
IPR016193	Cytidine deaminase-like	unknown	SSF53927	Cytidine deaminase-like	coord: 25..144 score: 6.69
None	No IPR available	GENE3D	G3DSA:3.40.140.10		coord: 26..148 score: 8.1
None	No IPR available	PANTHER	PTHR11079	CYTOSINE DEAMINASE	coord: 12..155 score: 8.4E
None	No IPR available	PANTHER	PTHR11079:SF90	SUBFAMILY NOT NAMED	coord: 12..155 score: 8.4E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla011272	Cla97C03G066520	Watermelon (97103) v2	wmwmbB125
Cla011272	Csa1G574840	Cucumber (Chinese Long) v2	cuwmB020
Cla011272	MELO3C015402	Melon (DHL92) v3.5.1	mewmB271
Cla011272	ClCG03G016230	Watermelon (Charleston Gray)	wcgwmB224
Cla011272	CSPI01G27440	Wild cucumber (PI 183967)	cpiwmB022
Cla011272	Cucsa.288930	Cucumber (Gy14) v1	cgywmB531
Cla011272	CmoCh10G011340	Cucurbita moschata (Rifu)	cmowmB047
Cla011272	Lsi06G002100	Bottle gourd (USVL1VR-Ls)	lsiwmB396
Cla011272	Cp4.1LG18g00810	Cucurbita pepo (Zucchini)	cpewmB359
Cla011272	CsGy1G026650	Cucumber (Gy14) v2	cgybwmB022
Cla011272	MELO3C015402.2	Melon (DHL92) v3.6.1	medwmB262
Cla011272	CsaV3_1G039720	Cucumber (Chinese Long) v3	cucwmB025
Cla011272	Bhi02G001642	Wax gourd	wgowmB653

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None