Cla010940.1 (mRNA) Watermelon (97103) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGGGTCGGCTCTGGTCTGGTCTGGTCGGGTCTGGTCCGGTCCTACCGATTGGCAGAGTGTTGAGGATGTTCTTTCTCATCAATGTAGTAGAACAGCACTTTTTGGGTTATAAATTCTCACAACCCATTTCCATTCCAACTCAGACTCTCTCTATTTTCTCCCTTTCAGCATCCTCTGCTTTTGATTTCACTGTTTTTTCTCTGTTTTCCGGTGGCTATTCTCCGACGGACATGGGCGGTGGGCCGCCGTATTTGGAGCTCTTTGTGGAGGAGACTAGTTTCTACAACCGCATTGTTTTGGGAACCATTTTTCCAGCTTTTACTTTAGACCCATTTCCTCATATTGTTCAAACTTGGCTTCGAAACTGCATTGGTGGATTCTTAATCTACTTCTTATCTGCCTTTCTTTGGTGCTTCTACATCTATTACTGGAAGCGCAATGTCTATGTTCCTAAAGGTGTTTGCCATTTTTTTCTTTTTTTTTTTTTTTTTGTTCCCCCCCTTTTTTCCCCCCCCCCCCCCCCCCCCCATCTCTTTTGTTGTTATTATCTCAACTGCTCCATCAGTGAGTTTTAATTCTGGTTATTTGAGTTCTGTTATTTCTCTTAGTTCTTTGTTGGCTCCCTTTTTGATCTCTTAATATGTCACTGATTATCCAATGGATTTGCGTGTCATTGGGGAGAATCTGGATTTGTGTTTCTTTTTACTAATTTCAGCTACTACTTCCAGTTTGATGTAGCTATATTCTTCAACTTGTTCTTTTTCTTGTATTTTTCTTGTACGTTTTCATCCTGCATGCTATATCTGATTCATTTTGGTTCTACTGATTAATTTTGTTTTTGAATGTTGAGGTGTTTTATTTAATTCTTCATTGTTCGACTCTTCTGATGCCATTGGATGTGCTAAAGTAATTTGTCCGGAAGGCTCTGATTGAGATAAGCTTAACATGACTTTGATGAGGCTGTTTTTTACCTTCTCAGATGCTGGTGATTTTTACCTTTTCCACGATGGATGATTGTAACTGATTACTAATCTACAGTATTTTTTAGTCATCTACAGGTTCTTGTAGATAGATTTCCTAAAAGGCCTGTATTGATATGTGCAAGCTGATGATTCTTCTTTCTTGTCTTTCCTAGATGAATTGTTATGAAAAGAACTGTAATATCCAACCCTTAGCGATAATAATTTAAGAGCTAACGGATGATTTCTTGTCTGTGGGTTTTTCTCAGTTAGACTACTCAAAGAGGATGTTTTATTTGTTGTTCAAATGGAAGATTCGTCTATGCATGAACATAAATATACAAAGAAAGGACATAATCTTTCCTTTAAGAATATTTGTTTGTCTTGGCTAATGAGATCAATCACAGACTCACACTTGTGGTATTTGTGATTAAGATATTATTTTTAATATGTGGTCTCTGGGCATCCTTGACTAATTTCAAGAAACAACTGTCTATTTTTATACATTTGGCGTTAATCAACTTGTGGGATGTTTTGGTAGGTGGCTATTTGAACTAAATATTATATGAATATCGAACTTGTTAGAATAGGTATACTATTGAATTGGAAAATTTCATTAAGAGTAACTTTTTTCTAATTTGATGCTTCTGTATGAATATTATATGCCTTTTTCTGTTGGAATATATTGTAGTAATGATGCACTTGAAAGTTTTCATTTCTGGATAAGTTGGTTTAGTATCATTTAATCTAATAAGCTTTGAAACTTAGAAATTATGTTGATCATCTGCCACCAATTTGCAATTTGCTGATTTGATTATTTATTCCCAAAATTCACCAGCAGTTTAAGGCATTAGGCTTTTGAAAAGATTTCTTGAAAATTTACATGTATCTTAATGTATAATAGTTTTCATTCATACTTCATGGAGTATGTTTTGGATTTGGATGAGGCTGTATGTAAGAATTCAAGCAACCCTTTGTAGACTTGCAACATCCTTCATGTCAAAAAAAAGTTCTTTATTATGTCTGTGTATGGCTCAGTGCTTGTATAATTGTTTGACCTGCTGGACACTTTCTTGCAGATTCTATTCCATCTAAAAAATCAATGCTCTTGCAAATCTTTGTAACAATCAAGGCCATGCCATTGTACTGCCTCCTTCCAACTTTTTCTGAATACGTGGTTGAACATGATTGGACAAAATGCTATCCAAGGATACTCGATGTCGGGTGGCCTGCCTATGCCTTCCATATAATTACTTATATTGCCTTTCTAGAGTTTTCTATCTATTGGATGCATAGGGGGCTACATGATATAAAGCCTCTTTACAAATATCTTCATGCAAAACACCATGTATACAACAAGAAAATTATTCTCTCTCCATTTGCTGGTACGTTCTTAATCTACTTTCTTAATTTTTCCAGCCATTTGCTATTCATCTTTCCATTCATGGTCAAAGATAATTGTTTGAAAAGATTGCATGTCATATGGGATTCTTGTTTGATTTACTTATGATGTGTTCAACTTTGTATGGAAAACCGAAATATGAACCAATCTCAATAGATTTATTTCCCAAAATATCTTTTACATAAAACAAAGAAAAGAAAAGGAATGAGAAAAGTGCACTCAGCATTAACTTGCTGTTGTTAACTGTTAGGAACAGCTGGTGTTCAAACTAAAGGTGTTAGGAACACTTTTGTTAACGTCAGGAGTTGGCTACTTCCCTCCATAGGACTTACCAAGATACATGAACTTGACTCTTGCCGTGTTTTTGTGTATTTTATCCATACTATACCTGTGCAGAATTTTTTTCTTTTCATCGACTCAATAGAGGATGTTTTACTGACTAAGACTATAAAATATTTCTGTAAAATGGTTATCAATTTTTATGGCGAGAATACATAGTTTTTGTATGCATTGCTTTATCTAGACAGAAACTTCAGGATTTGCTAATCTACTGGAAGAGGTGATCAGATAAATATAGCCATTGATCTCTTAGAAAGATCGTCTTCAATTCCATTGTGACGAATAGATTAAAGTCAACATATGACTATAGTTTGATAAGGAAGTTTAAAATCCCAAAATACACTGATGCTAAAGATACTTCATTGGATTCTGAAGTAGTTGAGACATTGATCTGTCAAATTGCGTCATTTCCTGTTTGCTTCTTCTGCCTTCAGATTAGAGTTCTTTGGATGTTTCTTATTACTCGAAGATCCTCTAGTAAATGGTCTTTTTGAATGGGCAGGTTTAGCATTTCACCCTGTCGATGGGATATTGCAAGCAATACCTCATTTGTTTGCTCTATTTCTCATTCCAACCCATTTTCGAACACATATTGTGCTGCTATTCTTCGAGGTGGTATGGACGGCAAACATTCACGATGGCATCCACGCACAAATGTGGCCAGTTCTGGGTGCTGGCTACCACACGATTCATCATACAAGATACCGCTACAATTATGGTCACTACTCCATATGGATGGATTGGATGTTTGGGACACTTCTTGATCCAATGGATACAGAAGCCAAAGGGTTGTGA ATGGAGGGTCGGCTCTGGTCTGGTCTGGTCGGGTCTGGTCCGGTCCTACCGATTGGCAGAGTGTTGAGGATGTTCTTTCTCATCAATGTAGTAGAACAGCACTTTTTGGGTTATAAATTCTCACAACCCATTTCCATTCCAACTCAGACTCTCTCTATTTTCTCCCTTTCAGCATCCTCTGCTTTTGATTTCACTGTTTTTTCTCTGTTTTCCGGTGGCTATTCTCCGACGGACATGGGCGGTGGGCCGCCGTATTTGGAGCTCTTTGTGGAGGAGACTAGTTTCTACAACCGCATTGTTTTGGGAACCATTTTTCCAGCTTTTACTTTAGACCCATTTCCTCATATTGTTCAAACTTGGCTTCGAAACTGCATTGGTGGATTCTTAATCTACTTCTTATCTGCCTTTCTTTGGTGCTTCTACATCTATTACTGGAAGCGCAATGTCTATGTTCCTAAAGATTCTATTCCATCTAAAAAATCAATGCTCTTGCAAATCTTTGTAACAATCAAGGCCATGCCATTGTACTGCCTCCTTCCAACTTTTTCTGAATACGTGGTTGAACATGATTGGACAAAATGCTATCCAAGGATACTCGATGTCGGGTGGCCTGCCTATGCCTTCCATATAATTACTTATATTGCCTTTCTAGAGTTTTCTATCTATTGGATGCATAGGGGGCTACATGATATAAAGCCTCTTTACAAATATCTTCATGCAAAACACCATGTATACAACAAGAAAATTATTCTCTCTCCATTTGCTGGTTTAGCATTTCACCCTGTCGATGGGATATTGCAAGCAATACCTCATTTGTTTGCTCTATTTCTCATTCCAACCCATTTTCGAACACATATTGTGCTGCTATTCTTCGAGGTGGTATGGACGGCAAACATTCACGATGGCATCCACGCACAAATGTGGCCAGTTCTGGGTGCTGGCTACCACACGATTCATCATACAAGATACCGCTACAATTATGGTCACTACTCCATATGGATGGATTGGATGTTTGGGACACTTCTTGATCCAATGGATACAGAAGCCAAAGGGTTGTGA ATGGAGGGTCGGCTCTGGTCTGGTCTGGTCGGGTCTGGTCCGGTCCTACCGATTGGCAGAGTGTTGAGGATGTTCTTTCTCATCAATGTAGTAGAACAGCACTTTTTGGGTTATAAATTCTCACAACCCATTTCCATTCCAACTCAGACTCTCTCTATTTTCTCCCTTTCAGCATCCTCTGCTTTTGATTTCACTGTTTTTTCTCTGTTTTCCGGTGGCTATTCTCCGACGGACATGGGCGGTGGGCCGCCGTATTTGGAGCTCTTTGTGGAGGAGACTAGTTTCTACAACCGCATTGTTTTGGGAACCATTTTTCCAGCTTTTACTTTAGACCCATTTCCTCATATTGTTCAAACTTGGCTTCGAAACTGCATTGGTGGATTCTTAATCTACTTCTTATCTGCCTTTCTTTGGTGCTTCTACATCTATTACTGGAAGCGCAATGTCTATGTTCCTAAAGATTCTATTCCATCTAAAAAATCAATGCTCTTGCAAATCTTTGTAACAATCAAGGCCATGCCATTGTACTGCCTCCTTCCAACTTTTTCTGAATACGTGGTTGAACATGATTGGACAAAATGCTATCCAAGGATACTCGATGTCGGGTGGCCTGCCTATGCCTTCCATATAATTACTTATATTGCCTTTCTAGAGTTTTCTATCTATTGGATGCATAGGGGGCTACATGATATAAAGCCTCTTTACAAATATCTTCATGCAAAACACCATGTATACAACAAGAAAATTATTCTCTCTCCATTTGCTGGTTTAGCATTTCACCCTGTCGATGGGATATTGCAAGCAATACCTCATTTGTTTGCTCTATTTCTCATTCCAACCCATTTTCGAACACATATTGTGCTGCTATTCTTCGAGGTGGTATGGACGGCAAACATTCACGATGGCATCCACGCACAAATGTGGCCAGTTCTGGGTGCTGGCTACCACACGATTCATCATACAAGATACCGCTACAATTATGGTCACTACTCCATATGGATGGATTGGATGTTTGGGACACTTCTTGATCCAATGGATACAGAAGCCAAAGGGTTGTGA MEGRLWSGLVGSGPVLPIGRVLRMFFLINVVEQHFLGYKFSQPISIPTQTLSIFSLSASSAFDFTVFSLFSGGYSPTDMGGGPPYLELFVEETSFYNRIVLGTIFPAFTLDPFPHIVQTWLRNCIGGFLIYFLSAFLWCFYIYYWKRNVYVPKDSIPSKKSMLLQIFVTIKAMPLYCLLPTFSEYVVEHDWTKCYPRILDVGWPAYAFHIITYIAFLEFSIYWMHRGLHDIKPLYKYLHAKHHVYNKKIILSPFAGLAFHPVDGILQAIPHLFALFLIPTHFRTHIVLLFFEVVWTANIHDGIHAQMWPVLGAGYHTIHHTRYRYNYGHYSIWMDWMFGTLLDPMDTEAKGL
BLAST of Cla010940 vs. Swiss-Prot
Match: SC5D_TOBAC (Delta(7)-sterol-C5(6)-desaturase OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 412.5 bits (1059), Expect = 4.5e-114 Identity = 179/266 (67.29%), Postives = 214/266 (80.45%), Query Frame = 1
BLAST of Cla010940 vs. Swiss-Prot
Match: SC5D1_ARATH (Delta(7)-sterol-C5(6)-desaturase 1 OS=Arabidopsis thaliana GN=STE1 PE=1 SV=2) HSP 1 Score: 400.2 bits (1027), Expect = 2.3e-110 Identity = 176/267 (65.92%), Postives = 208/267 (77.90%), Query Frame = 1
BLAST of Cla010940 vs. Swiss-Prot
Match: SC5D2_ARATH (Putative Delta(7)-sterol-C5(6)-desaturase 2 OS=Arabidopsis thaliana GN=HDF7 PE=3 SV=1) HSP 1 Score: 373.6 bits (958), Expect = 2.3e-102 Identity = 161/261 (61.69%), Postives = 201/261 (77.01%), Query Frame = 1
BLAST of Cla010940 vs. Swiss-Prot
Match: SC5D_RAT (Lathosterol oxidase OS=Rattus norvegicus GN=Sc5d PE=1 SV=1) HSP 1 Score: 133.7 bits (335), Expect = 4.1e-30 Identity = 80/234 (34.19%), Postives = 125/234 (53.42%), Query Frame = 1
BLAST of Cla010940 vs. Swiss-Prot
Match: SC5D_MOUSE (Lathosterol oxidase OS=Mus musculus GN=Sc5d PE=2 SV=2) HSP 1 Score: 130.2 bits (326), Expect = 4.5e-29 Identity = 78/234 (33.33%), Postives = 125/234 (53.42%), Query Frame = 1
BLAST of Cla010940 vs. TrEMBL
Match: A0A059AE11_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01509 PE=3 SV=1) HSP 1 Score: 433.7 bits (1114), Expect = 2.1e-118 Identity = 191/275 (69.45%), Postives = 224/275 (81.45%), Query Frame = 1
BLAST of Cla010940 vs. TrEMBL
Match: A0A022RY23_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a011765mg PE=3 SV=1) HSP 1 Score: 432.6 bits (1111), Expect = 4.7e-118 Identity = 190/266 (71.43%), Postives = 221/266 (83.08%), Query Frame = 1
BLAST of Cla010940 vs. TrEMBL
Match: K4BBC6_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1) HSP 1 Score: 427.9 bits (1099), Expect = 1.2e-116 Identity = 185/266 (69.55%), Postives = 222/266 (83.46%), Query Frame = 1
BLAST of Cla010940 vs. TrEMBL
Match: M1AP00_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400010415 PE=3 SV=1) HSP 1 Score: 427.2 bits (1097), Expect = 2.0e-116 Identity = 188/266 (70.68%), Postives = 217/266 (81.58%), Query Frame = 1
BLAST of Cla010940 vs. TrEMBL
Match: K4B6K9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1) HSP 1 Score: 426.4 bits (1095), Expect = 3.4e-116 Identity = 187/268 (69.78%), Postives = 218/268 (81.34%), Query Frame = 1
BLAST of Cla010940 vs. NCBI nr
Match: gi|449465599|ref|XP_004150515.1| (PREDICTED: delta(7)-sterol-C5(6)-desaturase [Cucumis sativus]) HSP 1 Score: 565.8 bits (1457), Expect = 5.1e-158 Identity = 251/273 (91.94%), Postives = 264/273 (96.70%), Query Frame = 1
BLAST of Cla010940 vs. NCBI nr
Match: gi|659086753|ref|XP_008444093.1| (PREDICTED: delta(7)-sterol-C5(6)-desaturase-like [Cucumis melo]) HSP 1 Score: 562.0 bits (1447), Expect = 7.4e-157 Identity = 250/274 (91.24%), Postives = 263/274 (95.99%), Query Frame = 1
BLAST of Cla010940 vs. NCBI nr
Match: gi|629085716|gb|KCW52073.1| (hypothetical protein EUGRSUZ_J01509 [Eucalyptus grandis]) HSP 1 Score: 433.7 bits (1114), Expect = 3.0e-118 Identity = 191/275 (69.45%), Postives = 224/275 (81.45%), Query Frame = 1
BLAST of Cla010940 vs. NCBI nr
Match: gi|848856022|ref|XP_012854674.1| (PREDICTED: delta(7)-sterol-C5(6)-desaturase [Erythranthe guttata]) HSP 1 Score: 432.6 bits (1111), Expect = 6.8e-118 Identity = 190/266 (71.43%), Postives = 221/266 (83.08%), Query Frame = 1
BLAST of Cla010940 vs. NCBI nr
Match: gi|658007026|ref|XP_008338691.1| (PREDICTED: delta(7)-sterol-C5(6)-desaturase-like [Malus domestica]) HSP 1 Score: 431.0 bits (1107), Expect = 2.0e-117 Identity = 185/268 (69.03%), Postives = 221/268 (82.46%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
|