ClCG02G024310 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G024310
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Small heat-shock protein, putative
Location	CG_Chr02 : 38568433 .. 38569885 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCCAAATTACATAACCGAACTTATGAAGATTTCGAACCTCCGGTGGAGCGGTCGGAAGAGGATGGCTGCACCATTCTCACCCTCTACATTCCCGGTTTGTCCCCCTAATTATATTTTCCTTTTTTCTTCTTTCTCATTAATTTCGTTCGCTGCTGATTTAATATATTGTGTTAGGAATACCCAAAATTAATATTAATTCATGTTAATAATTTATAAATATAGCAAAATTTAGTGTAAGAATCTTAATAATTTAGGCTTTTTGGTAATACAACTTATCGATTTTAAATTTGTTTGTGCTAATAAAGCTATTTGATGGAATTTTAGCTTTTTCAAAAATTTGGTATCTTGTCCTACCCATATCAAAGCTATCATTCTATTAATTTATTTTCTTACATTTATTATAAGTTTTAATTGGTTCAATTTTTTATGATAATTATTTAAAAGAATTTTTTTATAAAAAATTTAGATTAAACAATATTAGTTAGATATTTTTAAATAATTATCTTACAGTAAATTATAAATTAAATATGAATATAGAAAATAATTGAAATGATAATTTGGTTTTTCTTTTCATATAAATATATTGCACAAAATTAATATTAATTTACTAAATATGGTAACTATTTTTTTTAATTTTGAAATTAAGCTTTACAGACACTATTTTAATTTTTCCGCAACTAAATTTTTCTAAAAGTATAACTACAACAATTAGCCAATATGAATATAATTTAATTGACATAAAAATTGTATTATCAACCGATTATCCCATCTCACATCTATTTTAATCAACTAACATAGAATTCATTTTAAATTTGCTATGATTTTGAAATATGGAATACACTAAAAAGTGGAAGTCTTTTAGCACGAAAAAAAAAAAAAAAACAAACAAAACGTACTCTAATCTTGTATTGTTGTACAATAATCGGGAATGAAAATCAAAACTTCAACCTCTAAGATTAAAATTTATGTCAATTATCACTAAATTAAGTTCACCTTGGAATATGGTGTCACCAATTAATGATACACTCTAGGCTTCAGCAAGGAGCAAATTCAGGTTAAGGTATCCTCAAGAAGAAAGTTGAGGATTAGTGGGGAACGGCCTTACAAGAACAGCAAGAGCGCATGGCAGCGCTTCCACAAGGAGTTTGAAATCGCATCAAACTGCGACACTGCCAGCATTAGCGCCAAATACAAGGGCGGCATCCTTCATGTCCGCCAACCATTGTTGCAGGACCAGTCCGAGCCACGCACACCACCCCATGACCAAACCCCCAAACAACAAGCTGAGAACCCAATTTTGGAAGAACCAAAGCAAACTAATTCAACTGCCAACCACCACGCTCCGGTTACAAACACTCCGAAGATCAACAACAAGCGCTTGAAGGAGATGATTCCCGGAGTGTTCCTGAAGTTGGGGTTCTCTATTTTGCTCCCACTTATCTTATTG

mRNA sequence

ATGGCATCCAAATTACATAACCGAACTTATGAAGATTTCGAACCTCCGGTGGAGCGGTCGGAAGAGGATGGCTGCACCATTCTCACCCTCTACATTCCCGGTTTAAAGTTGAGGATTAGTGGGGAACGGCCTTACAAGAACAGCAAGAGCGCATGGCAGCGCTTCCACAAGGAGTTTGAAATCGCATCAAACTGCGACACTGCCAGCATTAGCGCCAAATACAAGGGCGGCATCCTTCATGTCCGCCAACCATTGTTGCAGGACCAGTCCGAGCCACGCACACCACCCCATGACCAAACCCCCAAACAACAAGCTGAGAACCCAATTTTGGAAGAACCAAAGCAAACTAATTCAACTGCCAACCACCACGCTCCGGTTACAAACACTCCGAAGATCAACAACAAGCGCTTGAAGGAGATGATTCCCGGAGTGTTCCTGAAGTTGGGGTTCTCTATTTTGCTCCCACTTATCTTATTG

Coding sequence (CDS)

ATGGCATCCAAATTACATAACCGAACTTATGAAGATTTCGAACCTCCGGTGGAGCGGTCGGAAGAGGATGGCTGCACCATTCTCACCCTCTACATTCCCGGTTTAAAGTTGAGGATTAGTGGGGAACGGCCTTACAAGAACAGCAAGAGCGCATGGCAGCGCTTCCACAAGGAGTTTGAAATCGCATCAAACTGCGACACTGCCAGCATTAGCGCCAAATACAAGGGCGGCATCCTTCATGTCCGCCAACCATTGTTGCAGGACCAGTCCGAGCCACGCACACCACCCCATGACCAAACCCCCAAACAACAAGCTGAGAACCCAATTTTGGAAGAACCAAAGCAAACTAATTCAACTGCCAACCACCACGCTCCGGTTACAAACACTCCGAAGATCAACAACAAGCGCTTGAAGGAGATGATTCCCGGAGTGTTCCTGAAGTTGGGGTTCTCTATTTTGCTCCCACTTATCTTATTG

Protein sequence

MASKLHNRTYEDFEPPVERSEEDGCTILTLYIPGLKLRISGERPYKNSKSAWQRFHKEFEIASNCDTASISAKYKGGILHVRQPLLQDQSEPRTPPHDQTPKQQAENPILEEPKQTNSTANHHAPVTNTPKINNKRLKEMIPGVFLKLGFSILLPLILL

Homology

[Close]

BLAST of ClCG02G024310 vs. TrEMBL
Match: A0A0A0L1N9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G269140 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.0e-40
Identity = 102/181 (56.35%), Postives = 118/181 (65.19%), Query Frame = 1


Query: 2   ASKLHNRTYEDFEPPVERSEEDGCTILTLYIPGL-------------KLRISGERPYKNS 61
           +S  H+RTYEDFEPPVE+SEEDGCTIL LYIPG              KLRISGER  KN+
Sbjct: 3   SSNKHHRTYEDFEPPVEQSEEDGCTILALYIPGFNKEQIKVQVSSKRKLRISGERALKNN 62

Query: 62  -KSAWQRFHKEFEIASNCDTASISAKYKGGILHVRQPLLQDQSEPRTPPHDQTPKQQAEN 121
            K   QRF+KEFEI SNC+T +I+AKYK GILHVRQPL QDQS+ +  PH         N
Sbjct: 63  NKHIMQRFNKEFEIPSNCNTTNITAKYKSGILHVRQPLQQDQSDSKQQPH--------HN 122

Query: 122 PILEEP--KQTNSTANHHAPVTNTPKINNK-------RLKEMIPGVFLKLGFSILLPLIL 160
           PILE+   KQTN  +NH+ P ++TPK + K       RLKE IP VFLKL   ILLP   
Sbjct: 123 PILEDQKVKQTNLASNHNEPHSDTPKDDRKFTTSTGQRLKETIPCVFLKLVLPILLPSAF 175

[Close]

BLAST of ClCG02G024310 vs. TrEMBL
Match: A0A0J8BYF2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g171580 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 6.8e-16
Identity = 50/123 (40.65%), Postives = 74/123 (60.16%), Query Frame = 1


Query: 7   NRTYEDFEPPVERSEEDGCTILTLYIPGLK-------------LRISGERPYKNSKSAWQ 66
           NR YED++PP +   E+G   + +Y+PG +             L+ISGERP   +K  W+
Sbjct: 8   NRVYEDYDPPSDLVTEEGSDTILVYLPGYRKEQLRVQLTTSRILKISGERPIGENK--WR 67

Query: 67  RFHKEFEIASNCDTASISAKYKGGILHVRQP-LLQDQSEPRTPPHDQTPKQQAENPILEE 116
           RF+KEF + SNCDT  I+AK++GGIL++RQP ++  Q+ P   P    P QQ   P + +
Sbjct: 68  RFNKEFGVPSNCDTKEITAKFEGGILYIRQPKVITPQALPLPLPQ---PPQQELPPPMPQ 125

[Close]

BLAST of ClCG02G024310 vs. TrEMBL
Match: A0A0K9RJ74_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_066390 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.3e-14
Identity = 44/112 (39.29%), Postives = 66/112 (58.93%), Query Frame = 1


Query: 7   NRTYEDFEPPVERSEEDGCTILTLYIPGLK-------------LRISGERPYKNSKSAWQ 66
           +R YED++PP +   E+ C  + +Y+PG K             L+ISGER   ++K  W+
Sbjct: 9   SRVYEDYDPPSDLVPEERCDTILIYLPGYKKEQLRVQLTTSRILKISGERQIGDNK--WR 68

Query: 67  RFHKEFEIASNCDTASISAKYKGGILHVRQPLLQDQSEPRTPPHDQTPKQQA 106
           RF+KEF + +NCDT  I+AK++GGIL++RQP L   + P   P D+     A
Sbjct: 69  RFNKEFRVPANCDTKDITAKFEGGILYIRQPKLITPAGPPEQPADKVKSASA 118

[Close]

BLAST of ClCG02G024310 vs. TrEMBL
Match: A0A0J8BYE8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g171590 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.9e-14
Identity = 54/138 (39.13%), Postives = 70/138 (50.72%), Query Frame = 1


Query: 1   MASKLHNRTYEDFEPPVERSEEDGCTILTLYIPGLK-------------LRISGERPYKN 60
           M +    R YEDF P  +   E  C  L LY+PG +             LRISGERP  +
Sbjct: 2   MMANTSERNYEDFAPISDFISEKECDTLLLYLPGFRKEQLKVQLTTSRILRISGERPIGD 61

Query: 61  SKSAWQRFHKEFEIASNCDTASISAKYKGGILHVRQPLLQDQSEPRTPPHDQTPKQQAEN 120
            K  W+RF KEF + SN D   ++AKY+GGIL++RQP L   +      H QT   +A  
Sbjct: 62  KK--WKRFLKEFPVPSNIDMKDMTAKYEGGILYIRQPKLITPAATEQHDHVQT-AAEAPA 121

Query: 121 PILEEPKQTNSTANHHAP 126
           P +E   Q  +TA   AP
Sbjct: 122 PAVEPVDQAKNTAEPPAP 136

[Close]

BLAST of ClCG02G024310 vs. TrEMBL
Match: K4DAL3_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-13
Identity = 48/123 (39.02%), Postives = 68/123 (55.28%), Query Frame = 1


Query: 7   NRTYEDFEPPVERSEEDGCTILTLYIPGLK-------------LRISGERPYKNSKSAWQ 66
           N+TYEDF P  E  +E    IL +++ G K             L+ISG+RP   ++S W 
Sbjct: 9   NQTYEDFVPTTELVQEQDSDILLIHLTGFKKEQVRVQLTKTGILKISGQRPV--AESKWL 68

Query: 67  RFHKEFEIASNCDTASISAKYKGGILHVRQPLLQDQSEPRTPPHDQTPKQQAENPILEEP 117
           RF K+F ++ NCD   ISAK++ GILHV+QP L   SE +      +  QQ + P  +EP
Sbjct: 69  RFQKDFPVSQNCDKTKISAKFENGILHVKQPKLITSSENKGQELPTSDAQQQQKP-ADEP 128

[Close]

BLAST of ClCG02G024310 vs. NCBI nr
Match: gi|659097901|ref|XP_008449876.1| (PREDICTED: uncharacterized protein LOC103491622 [Cucumis melo])

HSP 1 Score: 181.0 bits (458), Expect = 1.6e-42
Identity = 107/181 (59.12%), Postives = 119/181 (65.75%), Query Frame = 1


Query: 2   ASKLHNRTYEDFEPPVERSEEDGCTILTLYIPGL-------------KLRISGERPYK-N 61
           +S  H+RTYEDFEPPVERSEEDGC ILTLYIPG              KLRISGER  K N
Sbjct: 3   SSNKHHRTYEDFEPPVERSEEDGCIILTLYIPGFEKEQIKVQVSSKRKLRISGERALKSN 62

Query: 62  SKSAWQRFHKEFEIASNCDTASISAKYKGGILHVRQPLLQDQSEPRTPPHDQTPKQQAEN 121
           +K   QRF+KEFEI SNC+TA+I+AKYK GILHVRQPL QDQS  +  PH         N
Sbjct: 63  NKHTMQRFYKEFEIPSNCNTANITAKYKSGILHVRQPLQQDQSNSKQQPH--------HN 122

Query: 122 PILE--EPKQTNSTANHHAPVTNTPKINNK-------RLKEMIPGVFLKLGFSILLPLIL 160
           PILE  E KQTN  +NH+ P ++TPK N K       RLKE IP VFLKL   ILLP  L
Sbjct: 123 PILEDQEIKQTNLASNHNEPHSDTPKNNGKLTISTGQRLKETIPCVFLKLVLPILLPSAL 175

[Close]

BLAST of ClCG02G024310 vs. NCBI nr
Match: gi|449463865|ref|XP_004149651.1| (PREDICTED: uncharacterized protein LOC101219748 [Cucumis sativus])

HSP 1 Score: 174.5 bits (441), Expect = 1.5e-40
Identity = 102/181 (56.35%), Postives = 118/181 (65.19%), Query Frame = 1


Query: 2   ASKLHNRTYEDFEPPVERSEEDGCTILTLYIPGL-------------KLRISGERPYKNS 61
           +S  H+RTYEDFEPPVE+SEEDGCTIL LYIPG              KLRISGER  KN+
Sbjct: 3   SSNKHHRTYEDFEPPVEQSEEDGCTILALYIPGFNKEQIKVQVSSKRKLRISGERALKNN 62

Query: 62  -KSAWQRFHKEFEIASNCDTASISAKYKGGILHVRQPLLQDQSEPRTPPHDQTPKQQAEN 121
            K   QRF+KEFEI SNC+T +I+AKYK GILHVRQPL QDQS+ +  PH         N
Sbjct: 63  NKHIMQRFNKEFEIPSNCNTTNITAKYKSGILHVRQPLQQDQSDSKQQPH--------HN 122

Query: 122 PILEEP--KQTNSTANHHAPVTNTPKINNK-------RLKEMIPGVFLKLGFSILLPLIL 160
           PILE+   KQTN  +NH+ P ++TPK + K       RLKE IP VFLKL   ILLP   
Sbjct: 123 PILEDQKVKQTNLASNHNEPHSDTPKDDRKFTTSTGQRLKETIPCVFLKLVLPILLPSAF 175

[Close]

BLAST of ClCG02G024310 vs. NCBI nr
Match: gi|731348452|ref|XP_010685493.1| (PREDICTED: protein piccolo-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 92.0 bits (227), Expect = 9.8e-16
Identity = 50/123 (40.65%), Postives = 74/123 (60.16%), Query Frame = 1


Query: 7   NRTYEDFEPPVERSEEDGCTILTLYIPGLK-------------LRISGERPYKNSKSAWQ 66
           NR YED++PP +   E+G   + +Y+PG +             L+ISGERP   +K  W+
Sbjct: 8   NRVYEDYDPPSDLVTEEGSDTILVYLPGYRKEQLRVQLTTSRILKISGERPIGENK--WR 67

Query: 67  RFHKEFEIASNCDTASISAKYKGGILHVRQP-LLQDQSEPRTPPHDQTPKQQAENPILEE 116
           RF+KEF + SNCDT  I+AK++GGIL++RQP ++  Q+ P   P    P QQ   P + +
Sbjct: 68  RFNKEFGVPSNCDTKEITAKFEGGILYIRQPKVITPQALPLPLPQ---PPQQELPPPMPQ 125

[Close]

BLAST of ClCG02G024310 vs. NCBI nr
Match: gi|902221394|gb|KNA18912.1| (hypothetical protein SOVF_066390 [Spinacia oleracea])

HSP 1 Score: 87.8 bits (216), Expect = 1.8e-14
Identity = 44/112 (39.29%), Postives = 66/112 (58.93%), Query Frame = 1


Query: 7   NRTYEDFEPPVERSEEDGCTILTLYIPGLK-------------LRISGERPYKNSKSAWQ 66
           +R YED++PP +   E+ C  + +Y+PG K             L+ISGER   ++K  W+
Sbjct: 9   SRVYEDYDPPSDLVPEERCDTILIYLPGYKKEQLRVQLTTSRILKISGERQIGDNK--WR 68

Query: 67  RFHKEFEIASNCDTASISAKYKGGILHVRQPLLQDQSEPRTPPHDQTPKQQA 106
           RF+KEF + +NCDT  I+AK++GGIL++RQP L   + P   P D+     A
Sbjct: 69  RFNKEFRVPANCDTKDITAKFEGGILYIRQPKLITPAGPPEQPADKVKSASA 118

[Close]

BLAST of ClCG02G024310 vs. NCBI nr
Match: gi|731348454|ref|XP_010685494.1| (PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 86.7 bits (213), Expect = 4.1e-14
Identity = 54/138 (39.13%), Postives = 70/138 (50.72%), Query Frame = 1


Query: 1   MASKLHNRTYEDFEPPVERSEEDGCTILTLYIPGLK-------------LRISGERPYKN 60
           M +    R YEDF P  +   E  C  L LY+PG +             LRISGERP  +
Sbjct: 2   MMANTSERNYEDFAPISDFISEKECDTLLLYLPGFRKEQLKVQLTTSRILRISGERPIGD 61

Query: 61  SKSAWQRFHKEFEIASNCDTASISAKYKGGILHVRQPLLQDQSEPRTPPHDQTPKQQAEN 120
            K  W+RF KEF + SN D   ++AKY+GGIL++RQP L   +      H QT   +A  
Sbjct: 62  KK--WKRFLKEFPVPSNIDMKDMTAKYEGGILYIRQPKLITPAATEQHDHVQT-AAEAPA 121

Query: 121 PILEEPKQTNSTANHHAP 126
           P +E   Q  +TA   AP
Sbjct: 122 PAVEPVDQAKNTAEPPAP 136

The following BLAST results are available for this feature:

BLAST of ClCG02G024310 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1N9_CUCSA	1.0e-40	56.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G269140 PE=3 SV=1	[more]
A0A0J8BYF2_BETVU	6.8e-16	40.65	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g171580 PE=3 S...	[more]
A0A0K9RJ74_SPIOL	1.3e-14	39.29	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_066390 PE=3 SV=1	[more]
A0A0J8BYE8_BETVU	2.9e-14	39.13	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g171590 PE=3 S...	[more]
K4DAL3_SOLLC	1.1e-13	39.02	Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1	[more]

BLAST of ClCG02G024310 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659097901\|ref\|XP_008449876.1\|	1.6e-42	59.12	PREDICTED: uncharacterized protein LOC103491622 [Cucumis melo]	[more]
gi\|449463865\|ref\|XP_004149651.1\|	1.5e-40	56.35	PREDICTED: uncharacterized protein LOC101219748 [Cucumis sativus]	[more]
gi\|731348452\|ref\|XP_010685493.1\|	9.8e-16	40.65	PREDICTED: protein piccolo-like [Beta vulgaris subsp. vulgaris]	[more]
gi\|902221394\|gb\|KNA18912.1\|	1.8e-14	39.29	hypothetical protein SOVF_066390 [Spinacia oleracea]	[more]
gi\|731348454\|ref\|XP_010685494.1\|	4.1e-14	39.13	PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2 [Beta vulgaris subsp. vulg...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002068	A-crystallin/Hsp20_dom
IPR008978	HSP20-like_chaperone

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G024310.1	ClCG02G024310.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002068	Alpha crystallin/Hsp20 domain	PFAM	PF00011	HSP20	coord: 37..90 score: 7.
IPR008978	HSP20-like chaperone	GENE3D	G3DSA:2.60.40.790		coord: 45..90 score: 2.
IPR008978	HSP20-like chaperone	unknown	SSF49764	HSP20-like chaperones	coord: 6..89 score: 1.05
None	No IPR available	PANTHER	PTHR11527:SF156	HEAT SHOCK FAMILY PROTEIN	coord: 7..105 score: 9.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G024310	Csa4G269140	Cucumber (Chinese Long) v2	cuwcgB292
ClCG02G024310	MELO3C014715	Melon (DHL92) v3.5.1	mewcgB376
ClCG02G024310	Cla003135	Watermelon (97103) v1	wcgwmB197
ClCG02G024310	Bhi10G000386	Wax gourd	wcgwgoB283
ClCG02G024310	CSPI04G12640	Wild cucumber (PI 183967)	cpiwcgB303
ClCG02G024310	Cucsa.152830	Cucumber (Gy14) v1	cgywcgB258
ClCG02G024310	CmaCh02G011790	Cucurbita maxima (Rimu)	cmawcgB541
ClCG02G024310	CmoCh02G012130	Cucurbita moschata (Rifu)	cmowcgB538
ClCG02G024310	Cp4.1LG05g05490	Cucurbita pepo (Zucchini)	cpewcgB644
ClCG02G024310	CsGy4G011630	Cucumber (Gy14) v2	cgybwcgB271
ClCG02G024310	MELO3C014715.2	Melon (DHL92) v3.6.1	medwcgB370
ClCG02G024310	Carg13970	Silver-seed gourd	carwcgB0493
ClCG02G024310	CsaV3_4G017440	Cucumber (Chinese Long) v3	cucwcgB303

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G024310	Silver-seed gourd	carwcgB0503
ClCG02G024310	Watermelon (97103) v2	wcgwmbB138
ClCG02G024310	Cucurbita maxima (Rimu)	cmawcgB489
ClCG02G024310	Cucurbita moschata (Rifu)	cmowcgB490
ClCG02G024310	Cucurbita pepo (Zucchini)	cpewcgB255
ClCG02G024310	Bottle gourd (USVL1VR-Ls)	lsiwcgB054