Csa5G591770 (gene) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGCTCAACTACTCTTTGAATTATCCATTTCCTCAAAACTGCAATATTCTTCAATTATGGCTTCAGTAAGATTCTGCTTTCCCACTTTCTCCATTTTTGTGTCATGCTTTGCTACTTCGTTTTTTTTTTCTTTTCTTTCATTTCTGATTTGTTTTGTTCTTTTTGTAGGCTCAAAAGGGTCCATTTCTTCCTAAATTTGGTGATTGGGATGAACAAAATCCTGCTGCTGCTGAAGGGTTTACTGTGATTTTCAACAGGGCAAGAGATAATAAGAAGAATGGTGGAGCAGCTGGAACTCCTAATAATGTGATACCACCCCAAAACCAAAGTCAAAAGTATGAACCTGCTAAGAAGAATCAGAAGCACAAGTATCCAAGGAAGCAGGTTCGATCCAGTTCTGTTTTGCTTTGCTCCTTTCCTTGCTATCGTAGGAATAAGCTGAAAAGATAACTGATAAACTATAAGAAAAACAATCAAACTAGGACCAAAGTGGAGAAAAAAACCACTTACCATATTTGATCATTACGTGAAAAATTATTATATTATACAAAAACCTCTCTAAAGTTCTAATTACAGTAGCACTCTCTTAAAACATTATGAGCTATGGACTTTTAAACTGGAATGAAATGAAAGTCAAAGACATAATCTCGGTGCTTGAAGTTCATTGCTTTTCGAATATCTTGCGAAAACCAAACTACGATCACTTTTACAATGTGAATTTTTCCTTTCTAACCATCTGGTTTTCTTTGTTGCAGAAAGGATGGTGTGGCTGCTTTTGGTAGACGACTTTGTCACATTGAAAGAACACAAAAAATTCTTCTGTTTGTGGTTGGTGGCTTTCTTGAGTATTGATGGAT ATGGCTTCAGCTCAAAAGGGTCCATTTCTTCCTAAATTTGGTGATTGGGATGAACAAAATCCTGCTGCTGCTGAAGGGTTTACTGTGATTTTCAACAGGGCAAGAGATAATAAGAAGAATGGTGGAGCAGCTGGAACTCCTAATAATGTGATACCACCCCAAAACCAAAGTCAAAAGTATGAACCTGCTAAGAAGAATCAGAAGCACAAGTATCCAAGGAAGCAGAAAGGATGGTGTGGCTGCTTTTGGTAG ATGGCTTCAGCTCAAAAGGGTCCATTTCTTCCTAAATTTGGTGATTGGGATGAACAAAATCCTGCTGCTGCTGAAGGGTTTACTGTGATTTTCAACAGGGCAAGAGATAATAAGAAGAATGGTGGAGCAGCTGGAACTCCTAATAATGTGATACCACCCCAAAACCAAAGTCAAAAGTATGAACCTGCTAAGAAGAATCAGAAGCACAAGTATCCAAGGAAGCAGAAAGGATGGTGTGGCTGCTTTTGGTAG MASAQKGPFLPKFGDWDEQNPAAAEGFTVIFNRARDNKKNGGAAGTPNNVIPPQNQSQKYEPAKKNQKHKYPRKQKGWCGCFW*
BLAST of Csa5G591770 vs. Swiss-Prot
Match: RIN4_ARATH (RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 9.8e-07 Identity = 23/51 (45.10%), Postives = 34/51 (66.67%), Query Frame = 1
BLAST of Csa5G591770 vs. TrEMBL
Match: A0A0A0KTF9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G591770 PE=4 SV=1) HSP 1 Score: 186.4 bits (472), Expect = 1.4e-44 Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1
BLAST of Csa5G591770 vs. TrEMBL
Match: M0TVS8_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1) HSP 1 Score: 79.3 bits (194), Expect = 2.4e-12 Identity = 39/79 (49.37%), Postives = 50/79 (63.29%), Query Frame = 1
BLAST of Csa5G591770 vs. TrEMBL
Match: V4L5T8_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10011071mg PE=4 SV=1) HSP 1 Score: 79.3 bits (194), Expect = 2.4e-12 Identity = 41/85 (48.24%), Postives = 56/85 (65.88%), Query Frame = 1
BLAST of Csa5G591770 vs. TrEMBL
Match: M0TEE7_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1) HSP 1 Score: 79.0 bits (193), Expect = 3.2e-12 Identity = 37/79 (46.84%), Postives = 53/79 (67.09%), Query Frame = 1
BLAST of Csa5G591770 vs. TrEMBL
Match: A0A0A0LRE5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050070 PE=4 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 7.0e-12 Identity = 41/82 (50.00%), Postives = 52/82 (63.41%), Query Frame = 1
BLAST of Csa5G591770 vs. TAIR10
Match: AT3G48450.1 (AT3G48450.1 RPM1-interacting protein 4 (RIN4) family protein) HSP 1 Score: 73.9 bits (180), Expect = 5.1e-14 Identity = 42/93 (45.16%), Postives = 51/93 (54.84%), Query Frame = 1
BLAST of Csa5G591770 vs. TAIR10
Match: AT2G04410.1 (AT2G04410.1 RPM1-interacting protein 4 (RIN4) family protein) HSP 1 Score: 67.8 bits (164), Expect = 3.7e-12 Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 1
BLAST of Csa5G591770 vs. TAIR10
Match: AT5G63270.1 (AT5G63270.1 RPM1-interacting protein 4 (RIN4) family protein) HSP 1 Score: 67.8 bits (164), Expect = 3.7e-12 Identity = 35/78 (44.87%), Postives = 45/78 (57.69%), Query Frame = 1
BLAST of Csa5G591770 vs. TAIR10
Match: AT5G55850.2 (AT5G55850.2 RPM1-interacting protein 4 (RIN4) family protein) HSP 1 Score: 67.4 bits (163), Expect = 4.8e-12 Identity = 32/59 (54.24%), Postives = 38/59 (64.41%), Query Frame = 1
BLAST of Csa5G591770 vs. TAIR10
Match: AT5G40645.1 (AT5G40645.1 RPM1-interacting protein 4 (RIN4) family protein) HSP 1 Score: 57.4 bits (137), Expect = 5.0e-09 Identity = 31/56 (55.36%), Postives = 37/56 (66.07%), Query Frame = 1
BLAST of Csa5G591770 vs. NCBI nr
Match: gi|449435021|ref|XP_004135294.1| (PREDICTED: RPM1-interacting protein 4 [Cucumis sativus]) HSP 1 Score: 186.4 bits (472), Expect = 2.0e-44 Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1
BLAST of Csa5G591770 vs. NCBI nr
Match: gi|659090596|ref|XP_008446098.1| (PREDICTED: RPM1-interacting protein 4-like [Cucumis melo]) HSP 1 Score: 162.2 bits (409), Expect = 4.1e-37 Identity = 73/84 (86.90%), Postives = 77/84 (91.67%), Query Frame = 1
BLAST of Csa5G591770 vs. NCBI nr
Match: gi|743803597|ref|XP_010926960.1| (PREDICTED: RPM1-interacting protein 4-like isoform X1 [Elaeis guineensis]) HSP 1 Score: 82.0 bits (201), Expect = 5.3e-13 Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = 1
BLAST of Csa5G591770 vs. NCBI nr
Match: gi|743803601|ref|XP_010926961.1| (PREDICTED: RPM1-interacting protein 4-like isoform X2 [Elaeis guineensis]) HSP 1 Score: 80.9 bits (198), Expect = 1.2e-12 Identity = 40/79 (50.63%), Postives = 52/79 (65.82%), Query Frame = 1
BLAST of Csa5G591770 vs. NCBI nr
Match: gi|567188976|ref|XP_006404257.1| (hypothetical protein EUTSA_v10011071mg [Eutrema salsugineum]) HSP 1 Score: 79.3 bits (194), Expect = 3.5e-12 Identity = 41/85 (48.24%), Postives = 56/85 (65.88%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
This gene is associated with the following unigenes:
The following mRNA feature(s) are a part of this gene:
The following transcribed_cluster feature(s) are associated with this gene:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |