Csa1G573570 (gene) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAAGCACAGCAAATGGCTCCACCTGATATGAAATGCAAAGACAAGTTCTTAATCCAAAGCACAATAGTTCCCATTGAGACAAATCTTCATGAAGATTATGTAACTTCCACTTATAACTTGGTAAATGGTCTTTGTCAATAACTTTGTTGTATTAATTTACATTTTTTGTGAATTTGCATGTTCATAACTCATATCTATCTGTTCTGTATGAGCATACCTTAGGCTAGTTTAAGAGTATAAAACTTAGGGAACGTTATCAAATGAACTTTTATTGGAATTGGTTAGATTTTTTCAAGGGGCCATGATCGTATACCTATGATCATAAATTAAATTATCAAACTAATTGTGCATTCCTTCATAGGTAGTGTAAGTAACATTAATTAGTTGGGGCAGCTTTTCACAATACCATTTTTCTTTCTTGTACTGTCTTCTTCACAGTTTGAGAAAAATGGTAGCAAGAACAATATAGAAGAAAGGAGATTGAGTACAATTCTAGTTAAGGACGAATCTTCTTCCCCAACTATTGAAACATTGAATGTTGGAGTCTCAAACCAAAGTAAAGATAAGGAAATAGAAGAGTTGAAGTTAAAAATCACTCAACTTGATCAAAAACTCCACGAGGTTAGTCTTTCATACAACTCATAA ATGCAAGCACAGCAAATGGCTCCACCTGATATGAAATGCAAAGACAAGTTCTTAATCCAAAGCACAATAGTTCCCATTGAGACAAATCTTCATGAAGATTATGTAACTTCCACTTATAACTTGTTTGAGAAAAATGGTAGCAAGAACAATATAGAAGAAAGGAGATTGAGTACAATTCTAGTTAAGGACGAATCTTCTTCCCCAACTATTGAAACATTGAATGTTGGAGTCTCAAACCAAAGTAAAGATAAGGAAATAGAAGAGTTGAAGTTAAAAATCACTCAACTTGATCAAAAACTCCACGAGGTTAGTCTTTCATACAACTCATAA ATGCAAGCACAGCAAATGGCTCCACCTGATATGAAATGCAAAGACAAGTTCTTAATCCAAAGCACAATAGTTCCCATTGAGACAAATCTTCATGAAGATTATGTAACTTCCACTTATAACTTGTTTGAGAAAAATGGTAGCAAGAACAATATAGAAGAAAGGAGATTGAGTACAATTCTAGTTAAGGACGAATCTTCTTCCCCAACTATTGAAACATTGAATGTTGGAGTCTCAAACCAAAGTAAAGATAAGGAAATAGAAGAGTTGAAGTTAAAAATCACTCAACTTGATCAAAAACTCCACGAGGTTAGTCTTTCATACAACTCATAA MQAQQMAPPDMKCKDKFLIQSTIVPIETNLHEDYVTSTYNLFEKNGSKNNIEERRLSTILVKDESSSPTIETLNVGVSNQSKDKEIEELKLKITQLDQKLHEVSLSYNS*
BLAST of Csa1G573570 vs. Swiss-Prot
Match: VAP22_ARATH (Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22 PE=1 SV=1) HSP 1 Score: 51.2 bits (121), Expect = 8.3e-06 Identity = 36/74 (48.65%), Postives = 41/74 (55.41%), Query Frame = 1
BLAST of Csa1G573570 vs. TrEMBL
Match: A0A0A0LWK4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G573570 PE=4 SV=1) HSP 1 Score: 215.7 bits (548), Expect = 2.8e-53 Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1
BLAST of Csa1G573570 vs. TrEMBL
Match: A0A0B2P2A7_GLYSO (Vesicle-associated protein 2-2 OS=Glycine soja GN=glysoja_004421 PE=4 SV=1) HSP 1 Score: 66.2 bits (160), Expect = 2.8e-08 Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 1
BLAST of Csa1G573570 vs. TrEMBL
Match: I1MRD8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G022400 PE=4 SV=1) HSP 1 Score: 66.2 bits (160), Expect = 2.8e-08 Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 1
BLAST of Csa1G573570 vs. TrEMBL
Match: C6THF6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G022400 PE=2 SV=1) HSP 1 Score: 66.2 bits (160), Expect = 2.8e-08 Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 1
BLAST of Csa1G573570 vs. TrEMBL
Match: C6T767_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G252000 PE=2 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 3.6e-08 Identity = 37/66 (56.06%), Postives = 47/66 (71.21%), Query Frame = 1
BLAST of Csa1G573570 vs. TAIR10
Match: AT1G08820.1 (AT1G08820.1 vamp/synaptobrevin-associated protein 27-2) HSP 1 Score: 51.2 bits (121), Expect = 4.7e-07 Identity = 36/74 (48.65%), Postives = 41/74 (55.41%), Query Frame = 1
BLAST of Csa1G573570 vs. TAIR10
Match: AT5G47180.1 (AT5G47180.1 Plant VAMP (vesicle-associated membrane protein) family protein) HSP 1 Score: 49.7 bits (117), Expect = 1.4e-06 Identity = 35/109 (32.11%), Postives = 52/109 (47.71%), Query Frame = 1
BLAST of Csa1G573570 vs. NCBI nr
Match: gi|700211042|gb|KGN66138.1| (hypothetical protein Csa_1G573570 [Cucumis sativus]) HSP 1 Score: 215.7 bits (548), Expect = 4.1e-53 Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1
BLAST of Csa1G573570 vs. NCBI nr
Match: gi|659099699|ref|XP_008450732.1| (PREDICTED: vesicle-associated protein 1-3-like [Cucumis melo]) HSP 1 Score: 175.6 bits (444), Expect = 4.7e-41 Identity = 89/106 (83.96%), Postives = 98/106 (92.45%), Query Frame = 1
BLAST of Csa1G573570 vs. NCBI nr
Match: gi|694322120|ref|XP_009352199.1| (PREDICTED: vesicle-associated protein 2-2-like [Pyrus x bretschneideri]) HSP 1 Score: 66.6 bits (161), Expect = 3.0e-08 Identity = 41/92 (44.57%), Postives = 56/92 (60.87%), Query Frame = 1
BLAST of Csa1G573570 vs. NCBI nr
Match: gi|947052737|gb|KRH02190.1| (hypothetical protein GLYMA_17G022400 [Glycine max]) HSP 1 Score: 66.2 bits (160), Expect = 4.0e-08 Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 1
BLAST of Csa1G573570 vs. NCBI nr
Match: gi|734319355|gb|KHN03395.1| (Vesicle-associated protein 2-2 [Glycine soja]) HSP 1 Score: 66.2 bits (160), Expect = 4.0e-08 Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
|