WMU30009 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU30009
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	ATP-dependent Clp protease proteolytic subunit
Location	Chr10 : 1342666 .. 1343056 (-)
Sequence length	417

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CCCAGAGTGGCCTATTTACGGCGGGCGATAGGGATCGTTATATGTCGCCCATAGAGGCTGTAGAATATGGATTGATTGATGGAGTGATCGACAAAGATGGCATTATACCTCTCATGCCAGTGCCCCGAAAGAGTGAAGGCAAGTTTAAATTATGAAGAAATTAGTAAAGATCCCAGAAAATTCTTGACACCAGATGTCCCTGACGACGAGATATATTAGTTTCAGGCGTTTTCGGCAAAACCCTTCTCTAGGGTTTGATTTATTTCACATGTAGGATCTTAGAGTATCAACTTTTGGCAAACTGTCTCTACTTACCAGAAGTTAAAAGGTATTGGGTATTGGACTTCTTTTTTTTGTCTGAAATTTTTAAATGAGCATTCTGAGGAAGAAAATTGACAATGAATCATATTTTGTATT

Library


Library category	ESTs
watermelon fruit 10d library	6
watermelon fruit 18d library	1

Homology

[Close]

BLAST of WMU30009 vs. TAIR10
Match: AT5G45390.1 (AT5G45390.1 CLP protease P4)

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-10
Identity = 30/33 (90.91%), Postives = 28/33 (84.85%), Query Frame = 3


Query: 27  DRDRYMSPIEAVEYGLIDGVIDKDGIIPLMPVP 86
           DRDRYMSPIEAVEYGLIDGVID D IIPL PVP
Sbjct: 230 DRDRYMSPIEAVEYGLIDGVIDGDSIIPLEPVP 262

Query: 87   126
           
Sbjct: 290  262

HSP 2 Score: 57.4 bits (137), Expect = 8.2e-09
Identity = 24/31 (77.42%), Postives = 26/31 (83.87%), Query Frame = 1


Query: 124 PERVKASLNYEEISKDPRKFLTPDVPDDEIY 183
           P+RVK  +NYEEISKDP KFLTP++PDDEIY
Sbjct: 262 PDRVKPRVNYEEISKDPMKFLTPEIPDDEIY 292

Query: 184  217
           
Sbjct: 322  292

[Close]

BLAST of WMU30009 vs. Swiss-Prot
Match: CLPP4_ARATH (ATP-dependent Clp protease proteolytic subunit 4, chloroplastic OS=Arabidopsis thaliana GN=CLPP4 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.0e-09
Identity = 30/33 (90.91%), Postives = 28/33 (84.85%), Query Frame = 3


Query: 27  DRDRYMSPIEAVEYGLIDGVIDKDGIIPLMPVP 86
           DRDRYMSPIEAVEYGLIDGVID D IIPL PVP
Sbjct: 230 DRDRYMSPIEAVEYGLIDGVIDGDSIIPLEPVP 262

Query: 87   126
           
Sbjct: 290  262

HSP 2 Score: 57.4 bits (137), Expect = 1.5e-07
Identity = 24/31 (77.42%), Postives = 26/31 (83.87%), Query Frame = 1


Query: 124 PERVKASLNYEEISKDPRKFLTPDVPDDEIY 183
           P+RVK  +NYEEISKDP KFLTP++PDDEIY
Sbjct: 262 PDRVKPRVNYEEISKDPMKFLTPEIPDDEIY 292

Query: 184  217
           
Sbjct: 322  292

[Close]

BLAST of WMU30009 vs. TrEMBL
Match: A0A0A0L3S1_CUCSA (ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus GN=Csa_3G005040 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.8e-10
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 3


Query: 27  DRDRYMSPIEAVEYGLIDGVIDKDGIIPLMPVPRKSEGKF 86
           DRDRYMSPIEAVEYG IDGVID+D IIPLMPVP K +GKF
Sbjct: 231 DRDRYMSPIEAVEYGFIDGVIDQDSIIPLMPVPDKVKGKF 270

Query: 87   146
           
Sbjct: 291  270

[Close]

BLAST of WMU30009 vs. TrEMBL
Match: A0A0A0L3S1_CUCSA (ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus GN=Csa_3G005040 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.2e-04
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 1


Query: 124 PERVKASLNYEEISKDPRKFLTPDVPDDEIY 183
           P++VK   NY E+ KDP KFLTPDVPDDEI+
Sbjct: 263 PDKVKGKFNYTEVMKDPMKFLTPDVPDDEIF 293

Query: 184  217
           
Sbjct: 323  293

HSP 2 Score: 67.8 bits (164), Expect = 1.2e-08
Identity = 33/40 (82.50%), Postives = 33/40 (82.50%), Query Frame = 3


Query: 27  DRDRYMSPIEAVEYGLIDGVIDKDGIIPLMPVPRKSEGKF 86
           DRDRYMSPIEAVEYGLIDGVIDKD IIPL PVP K    F
Sbjct: 245 DRDRYMSPIEAVEYGLIDGVIDKDSIIPLEPVPDKVISNF 284

Query: 87   146
           
Sbjct: 305  284

[Close]

BLAST of WMU30009 vs. TrEMBL
Match: A0A0K9RS56_SPIOL (ATP-dependent Clp protease proteolytic subunit OS=Spinacia oleracea GN=SOVF_035430 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.0e-04
Identity = 21/31 (67.74%), Postives = 28/31 (90.32%), Query Frame = 1


Query: 124 PERVKASLNYEEISKDPRKFLTPDVPDDEIY 183
           P++V ++ NY EISKDP+KFLTP++PDDEIY
Sbjct: 277 PDKVISNFNYMEISKDPKKFLTPEIPDDEIY 307

Query: 184  217
           
Sbjct: 337  307

HSP 2 Score: 67.8 bits (164), Expect = 1.2e-08
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 3


Query: 27  DRDRYMSPIEAVEYGLIDGVIDKDGIIPLMPVPRK 86
           DRDRYMSPIEAVEYG+IDGVID+D IIPLMPVP +
Sbjct: 283 DRDRYMSPIEAVEYGIIDGVIDRDSIIPLMPVPER 317

Query: 87   132
           
Sbjct: 343  317

[Close]

BLAST of WMU30009 vs. TrEMBL
Match: A0A059CBQ6_EUCGR (ATP-dependent Clp protease proteolytic subunit OS=Eucalyptus grandis GN=EUGRSUZ_D00191 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.8e-08
Identity = 28/31 (90.32%), Postives = 31/31 (100.00%), Query Frame = 1


Query: 124 PERVKASLNYEEISKDPRKFLTPDVPDDEIY 183
           PERVK++LNYEEISKDPRKFLTPD+PDDEIY
Sbjct: 315 PERVKSTLNYEEISKDPRKFLTPDIPDDEIY 345

Query: 184  217
           
Sbjct: 375  345

HSP 2 Score: 67.8 bits (164), Expect = 1.2e-08
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 3


Query: 27  DRDRYMSPIEAVEYGLIDGVIDKDGIIPLMPVPRKSEGKF 86
           DRDRYMSPIEAVEYG+IDGVID+D IIPL+PVP K +  F
Sbjct: 231 DRDRYMSPIEAVEYGIIDGVIDRDSIIPLVPVPEKVKPGF 270

Query: 87   146
           
Sbjct: 291  270

[Close]

BLAST of WMU30009 vs. TrEMBL
Match: A0A067E648_CITSI (ATP-dependent Clp protease proteolytic subunit OS=Citrus sinensis GN=CISIN_1g041849mg PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.9e-04
Identity = 22/30 (73.33%), Postives = 25/30 (83.33%), Query Frame = 1


Query: 124 PERVKASLNYEEISKDPRKFLTPDVPDDEI 183
           PE+VK   +Y E+ KDPRKFLTPDVPDDEI
Sbjct: 263 PEKVKPGFDYLEVRKDPRKFLTPDVPDDEI 292

Query: 184  214
           
Sbjct: 323  292

HSP 2 Score: 67.8 bits (164), Expect = 1.2e-08
Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 3


Query: 27  DRDRYMSPIEAVEYGLIDGVIDKDGIIPLMPVPRKSEGKF 86
           DRDRYMSPIEAVEYGLIDGVID+D IIPL PVP K +  F
Sbjct: 252 DRDRYMSPIEAVEYGLIDGVIDRDSIIPLEPVPDKVKSTF 291

Query: 87   146
           
Sbjct: 312  291

[Close]

BLAST of WMU30009 vs. NCBI nr
Match: gi|449456777|ref|XP_004146125.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 4.8e-11
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 3


Query: 27  DRDRYMSPIEAVEYGLIDGVIDKDGIIPLMPVPRKSEGKF 86
           DRDRYMSPIEAVEYG IDGVID+D IIPLMPVP K +GKF
Sbjct: 231 DRDRYMSPIEAVEYGFIDGVIDQDSIIPLMPVPDKVKGKF 270

Query: 87   146
           
Sbjct: 291  270

[Close]

BLAST of WMU30009 vs. NCBI nr
Match: gi|1009107988|ref|XP_015882512.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 72.8 bits (177), Expect = 5.3e-10
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 3


Query: 27  DRDRYMSPIEAVEYGLIDGVIDKDGIIPLMPVPRKSEGK 86
           DRDRYMSPIEAVEYG+IDGVID+D IIPL+PVP K +G+
Sbjct: 260 DRDRYMSPIEAVEYGMIDGVIDRDSIIPLVPVPEKVKGR 298

Query: 87   144
           
Sbjct: 320  298

[Close]

BLAST of WMU30009 vs. NCBI nr
Match: gi|672160444|ref|XP_008800005.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Phoenix dactylifera])

HSP 1 Score: 72.4 bits (176), Expect = 7.0e-10
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 3


Query: 27  DRDRYMSPIEAVEYGLIDGVIDKDGIIPLMPVPRKSEGK 86
           DRDRYMSPIEAVEYG+IDGVID+D IIPLMPVP K + K
Sbjct: 254 DRDRYMSPIEAVEYGIIDGVIDRDSIIPLMPVPEKVKPK 292

Query: 87   144
           
Sbjct: 314  292

[Close]

BLAST of WMU30009 vs. NCBI nr
Match: gi|719999561|ref|XP_010255757.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic-like [Nelumbo nucifera])

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-09
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 3


Query: 27  DRDRYMSPIEAVEYGLIDGVIDKDGIIPLMPVPRKSEGK 86
           DRDRYMSPIEAVEYG+IDGVIDKD IIPL+PVP K + +
Sbjct: 249 DRDRYMSPIEAVEYGIIDGVIDKDSIIPLVPVPEKVKSR 287

Query: 87   144
           
Sbjct: 309  287

[Close]

BLAST of WMU30009 vs. NCBI nr
Match: gi|720073760|ref|XP_010278809.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic-like [Nelumbo nucifera])

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-09
Identity = 30/39 (76.92%), Postives = 36/39 (92.31%), Query Frame = 3


Query: 27  DRDRYMSPIEAVEYGLIDGVIDKDGIIPLMPVPRKSEGK 86
           DRDRYMSPIEAVEYG+IDGVID+D IIPL+PVP K++ +
Sbjct: 247 DRDRYMSPIEAVEYGIIDGVIDRDSIIPLVPVPEKAKSR 285

Query: 87   144
           
Sbjct: 307  285

The following BLAST results are available for this feature:

BLAST of WMU30009 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G45390.1	1.1e-10	90.91	CLP protease P4	[more]

BLAST of WMU30009 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CLPP4_ARATH	2.0e-09	90.91	ATP-dependent Clp protease proteolytic subunit 4, chloroplastic OS=Arabidopsis t...	[more]

BLAST of WMU30009 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3S1_CUCSA	2.8e-10	85.00	ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus GN=Csa_3G00504...	[more]
A0A0A0L3S1_CUCSA	5.2e-04	67.74	ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus GN=Csa_3G00504...	[more]
A0A0K9RS56_SPIOL	4.0e-04	67.74	ATP-dependent Clp protease proteolytic subunit OS=Spinacia oleracea GN=SOVF_0354...	[more]
A0A059CBQ6_EUCGR	7.8e-08	90.32	ATP-dependent Clp protease proteolytic subunit OS=Eucalyptus grandis GN=EUGRSUZ_...	[more]
A0A067E648_CITSI	8.9e-04	73.33	ATP-dependent Clp protease proteolytic subunit OS=Citrus sinensis GN=CISIN_1g041...	[more]

BLAST of WMU30009 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456777\|ref\|XP_004146125.1\|	4.8e-11	85.00	PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Cucu...	[more]
gi\|1009107988\|ref\|XP_015882512.1\|	5.3e-10	79.49	PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Zizi...	[more]
gi\|672160444\|ref\|XP_008800005.1\|	7.0e-10	82.05	PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Phoe...	[more]
gi\|719999561\|ref\|XP_010255757.1\|	1.2e-09	79.49	PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic-like ...	[more]
gi\|720073760\|ref\|XP_010278809.1\|	1.2e-09	76.92	PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic-like ...	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR023562	ClpP/TepA

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla008866	Cla008866	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0009174	S1_0009174	EST
S1_0040474	S1_0040474	EST
S1_0050283	S1_0050283	EST
S1_0089378	S1_0089378	EST
S1_0116717	S1_0116717	EST
S1_0137275	S1_0137275	EST
S2_0060354	S2_0060354	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PANTHER	PTHR10381	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT	coord: 10..44 score: 8.3
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PFAM	PF00574	CLP_protease	coord: 8..32 score: 6.
None	No IPR available	PANTHER	PTHR10381:SF24	SUBFAMILY NOT NAMED	coord: 10..44 score: 8.3