WMU28328 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU28328
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown protein
Location	Chr10 : 1349881 .. 1353793 (-)
Sequence length	1045

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TCACCATGGGAGCCTCCTTCAGAACTTGCAGCTTCCTCACTAGATCCATGGTGGTTTTCTTGGCTCTCTTCGATCTGATCGTGTTTGGTTGAACTGCCATACATCTGTCTTCTTGCCTCCTTTCGCGCTGCCCTCTCGGATAATTTAAGTTCTCTAAAGCCTTGTTCAAATTTAGCTTCGTCCTCTGGCGAGAAGAAAACGACCTCTGTCTGCCCGAGTTCTTCATACATCTTCTCAATCTTTGCCTTCCAAAACAGCCCAATTTCAGTGTCCATTTTGTGGTATGGTGTTTTCAGCAGATACTCATCAATCCCACCGGCCTTGTCGATGCATCGAAGGGCATGAGTGGTGACTTTAACTCGAATATGGCGGTCTAGAATATAACTGAAAAGTCGCTTCTCTTGTACGTTTGGTTTCCAACTCCTCCTTGATTTTGTTGCCACCGTCTTCACTGACACGGTTGCCAAATTGGATGTGACGGCCGGCATAGATACCACGCTTTGCCCTATTCATCACTACTTTGCTGTCCGGAATACATTTCTTCAATGAATCCTTCACTCCAGGAGCCAAAATTTTTTCTCTCCAACTTTCTTTAGTATCTTCTTCATCATTTCCTTTCCTCTGAAGGCCATATTGACTCTCTCTCGTACAATCAGCCGTGATCCAAATATACTCCTAAAATAAGAACAGAAATAGAACGTTCTGACGAAAAGAACTTGAATTACTGCCAACAGGCTTCTACAGAAAGAAAACCAAGCTCGATGAAATTCCACTCGGTACAGGTTCCGGACCGAATTTTGAGCAGCAGGATTTGATAAGGAATAAAGTTTTCATCAGCTATTTGTTTTGTTTCAATCCGTGGTTCTTAGCCCTCTTTGGAACCCCTGAATTTTGAAAGATTTCAAATATTTGAGAAAGGGCGAGAAAAAAACAAAACCAGTAAATCTGATTGCTCGGAGAGGCGGGAGAATGTTTAAGGCAGGGAGCGGCTGCGAGTTCGTCGGGAGACTGAGACTGCGGCGGGGTAGGTGCAGTGGCTGGTAAT

Library


Library category	ESTs
watermelon fruit 10d library	2
watermelon fruit 18d library	1
watermelon fruit 26d library	2

Homology

[Close]

BLAST of WMU28328 vs. TAIR10
Match: AT4G31460.1 (AT4G31460.1 Ribosomal L28 family)

HSP 1 Score: 191.0 bits (484), Expect = 1.2e-48
Identity = 107/195 (54.87%), Postives = 129/195 (66.15%), Query Frame = -3


Query: 75  MAFRGKEMMKKILKKVGEKKFW-----LLE*RIH*RNVF--RTAK***IGQSVVSMPAVT 134
           MAFRGKEMMKK++KKVG +         L+  +    V   R  +    G+ +     V+
Sbjct: 1   MAFRGKEMMKKLVKKVGAENITPELKEKLKACVPDTKVVMGRAKRGLYAGRHIQYGNRVS 60

Query: 135 SNLATVSVKTVATKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLL 194
            +           KSRR WKPNVQEKRLFSYI D HI+VKVTTHALRCIDKAGGIDEYLL
Sbjct: 61  ED--------GGNKSRRCWKPNVQEKRLFSYIFDSHIKVKVTTHALRCIDKAGGIDEYLL 120

Query: 195 KTPYHKMDTEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEA 254
           KTPY KMDTE+GL+WK K+E  Y ELGQ EV FF+PEDEAK EQGF++L ++++ AR+EA
Sbjct: 121 KTPYQKMDTEMGLYWKTKVEARYAELGQMEVAFFNPEDEAKLEQGFKDLNIAKKDARREA 180

Query: 255 RR--QMYGSSTKHDQ 314
           RR  +  G   K D+
Sbjct: 181 RRTFRKKGGGNKGDE 187

Query: 315  374
           
Sbjct: 241  187

Query: 375  434
           
Sbjct: 301  187

Query: 435  494
           
Sbjct: 361  187

Query: 495  554
           
Sbjct: 421  187

Query: 555  614
           
Sbjct: 481  187

Query: 615  633
           
Sbjct: 541  187

[Close]

BLAST of WMU28328 vs. Swiss-Prot
Match: RL28_MAGMM (50S ribosomal protein L28 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) GN=rpmB PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.3e-07
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = -3


Query: 291 KSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLK 350
           K+RR W PN+Q K L+S  L + ++V ++T ALR +D AGG+D YLLK
Sbjct: 24  KTRRQWMPNIQTKALWSITLGQSVKVTISTSALRSVDNAGGLDNYLLK 71

Query: 351  410
           
Sbjct: 84   71

Query: 411  435
           
Sbjct: 144  71

[Close]

BLAST of WMU28328 vs. Swiss-Prot
Match: RL28_GLUDA (50S ribosomal protein L28 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rpmB PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.4e-06
Identity = 26/64 (40.62%), Postives = 39/64 (60.94%), Query Frame = -3


Query: 264 SVKTVATKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHK 323
           +V     KSRR + PN+QE  L S IL   +R++++T+ +R ++  GG+D +LL TP  K
Sbjct: 17  NVSHANNKSRRRFLPNLQETSLLSDILGSAVRLRLSTNGIRTVEHNGGLDAFLLSTPNRK 76

Query: 324 MDTE 383
           + TE
Sbjct: 77  LPTE 80

Query: 384  443
           
Sbjct: 137  80

Query: 444  456
           
Sbjct: 197  80

[Close]

BLAST of WMU28328 vs. Swiss-Prot
Match: RM28_XENLA (39S ribosomal protein L28, mitochondrial OS=Xenopus laevis GN=mrpl28 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.8e-06
Identity = 30/100 (30.00%), Postives = 53/100 (53.00%), Query Frame = -3


Query: 144 VATKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTE 203
           ++ + ++ WKP + ++ L+S ILD+   + VT   L  ID A G D Y+LKTP   ++++
Sbjct: 97  LSARVKKVWKPQLFKRELYSEILDKKFSITVTMRTLDLIDAAYGFDFYILKTPKEDLNSK 156

Query: 204 IGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELK 263
           +G+ +K     M   L   +   + P D +K +Q + + K
Sbjct: 157 VGMDFK---RAMLMRLASKDSNLY-PNDPSKRDQIYNKYK 192

Query: 264  323
           
Sbjct: 217  192

Query: 324  383
           
Sbjct: 277  192

Query: 384  443
           
Sbjct: 337  192

[Close]

BLAST of WMU28328 vs. Swiss-Prot
Match: RM24_SCHPO (54S ribosomal protein L24, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl24 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 9.0e-06
Identity = 24/49 (48.98%), Postives = 31/49 (63.27%), Query Frame = -3


Query: 288 KSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKT 347
           K+RR W PN   K L+S +L+    + VT+  LR IDK GG+DEYL+K+
Sbjct: 50  KTRRVWIPNGHSKWLYSNVLEEKFHLYVTSRVLRTIDKEGGLDEYLVKS 98

Query: 348  407
           
Sbjct: 110  98

Query: 408  435
           
Sbjct: 170  98

[Close]

BLAST of WMU28328 vs. TrEMBL
Match: A0A0D2PMQ4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G069100 PE=3 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.4e-61
Identity = 137/208 (65.87%), Postives = 151/208 (72.60%), Query Frame = -3


Query: 54  MAFRGKEMMKKILKKVGEKKFWLLE*RIH*RNVFRTAK***IGQSVVSMP--AVTSNLAT 113
           MAFRGKEMMKK+LKKVGEK            N+    K     Q   S+P   V  N A 
Sbjct: 1   MAFRGKEMMKKLLKKVGEK------------NLAHGVK----EQLQKSIPDSKVVMNRAK 60

Query: 114 VSV-------------KTVATKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKA 173
             +             +    KSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKA
Sbjct: 61  RGLYAGRHIQFGNRISEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKA 120

Query: 174 GGIDEYLLKTPYHKMDTEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLS 233
           GGIDEYLLKTPYHKMDTE+GLFWKAKIEKMYEELGQ EVVFFSPEDEAKFEQGF+ELKL+
Sbjct: 121 GGIDEYLLKTPYHKMDTEMGLFWKAKIEKMYEELGQMEVVFFSPEDEAKFEQGFKELKLA 180

Query: 234 ERAARKEARRQMYGSSTKHDQIEESQEN 293
           ERAAR++ARRQMYG S K ++IE  + +
Sbjct: 181 ERAARRDARRQMYGWSGKLEEIENRRSH 192

Query: 294  353
           
Sbjct: 241  192

Query: 354  413
           
Sbjct: 301  192

Query: 414  473
           
Sbjct: 361  192

Query: 474  533
           
Sbjct: 421  192

Query: 534  593
           
Sbjct: 481  192

Query: 594  633
           
Sbjct: 541  192

[Close]

BLAST of WMU28328 vs. TrEMBL
Match: A0A0B0N4M4_GOSAR (54S ribosomal L24, mitochondrial OS=Gossypium arboreum GN=F383_01611 PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 9.8e-60
Identity = 134/208 (64.42%), Postives = 149/208 (71.63%), Query Frame = -3


Query: 54  MAFRGKEMMKKILKKVGEKKFWLLE*RIH*RNVFRTAK***IGQSVVSMP--AVTSNLAT 113
           MAFRGKEMMKK+LKKVGEK            N+    K     Q   S+P   V  N A 
Sbjct: 1   MAFRGKEMMKKLLKKVGEK------------NLAHGVK----EQLQKSIPDSKVVMNRAK 60

Query: 114 VSV-------------KTVATKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKA 173
             +             +    KSRRSWKPNVQEKRLFSYILD  IRVKVTTHALRCIDKA
Sbjct: 61  RGLYAGRHIQFGNRISEDGGNKSRRSWKPNVQEKRLFSYILDHQIRVKVTTHALRCIDKA 120

Query: 174 GGIDEYLLKTPYHKMDTEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLS 233
           GGIDEYLLKTPYHKMDTE+GLFWKAKIEKMYEELGQ EVVFFSPEDEAKFEQGF++LKL+
Sbjct: 121 GGIDEYLLKTPYHKMDTEMGLFWKAKIEKMYEELGQMEVVFFSPEDEAKFEQGFKDLKLA 180

Query: 234 ERAARKEARRQMYGSSTKHDQIEESQEN 293
           ERAAR++ARRQMYG S K ++IE  + +
Sbjct: 181 ERAARRDARRQMYGWSGKLEEIENRRSH 192

Query: 294  353
           
Sbjct: 241  192

Query: 354  413
           
Sbjct: 301  192

Query: 414  473
           
Sbjct: 361  192

Query: 474  533
           
Sbjct: 421  192

Query: 534  593
           
Sbjct: 481  192

Query: 594  633
           
Sbjct: 541  192

[Close]

BLAST of WMU28328 vs. TrEMBL
Match: A0A0A0L1P8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G005030 PE=3 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.3e-59
Identity = 132/199 (66.33%), Postives = 145/199 (72.86%), Query Frame = -3


Query: 57  MAFRGKEMMKKILKKVGEKKFWLLE*RIH*RNVFRTAK***IGQSVVSMPAVTSNLATVS 116
           MAFRGKEMMKKILKKVGE              V  + K       +V   A     A   
Sbjct: 1   MAFRGKEMMKKILKKVGENNLA--------PGVKDSLKKCIPDSKIVMGRANRGIYAGRH 60

Query: 117 VK-------TVATKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLL 176
           ++           KSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLL
Sbjct: 61  IRFGNRVSEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLL 120

Query: 177 KTPYHKMDTEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEA 236
           KTPYHKMDTE+GLFWK+KIE +YEELG+ EVVFFSPEDE KFEQ F+ELKLSERAAR+EA
Sbjct: 121 KTPYHKMDTELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREA 180

Query: 237 RRQMYGSSTKHDQIEESQE 296
           RRQMYGSS K +QI+E  E
Sbjct: 181 RRQMYGSSAKLNQIKEGGE 191

Query: 297  356
           
Sbjct: 241  191

Query: 357  416
           
Sbjct: 301  191

Query: 417  476
           
Sbjct: 361  191

Query: 477  536
           
Sbjct: 421  191

Query: 537  596
           
Sbjct: 481  191

Query: 597  633
           
Sbjct: 541  191

[Close]

BLAST of WMU28328 vs. TrEMBL
Match: E0CQ81_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g14510 PE=3 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 5.4e-58
Identity = 126/192 (65.62%), Postives = 146/192 (76.04%), Query Frame = -3


Query: 66  MAFRGKEMMKKILKKVGEKKFW-LLE*RIH*RNVF--RTAK***IGQSVVSMPAVTSNLA 125
           MAFR +EMMKKI+KK+G+ K    L+  +    V   R  +    G+ +     V+ +  
Sbjct: 1   MAFRSREMMKKIVKKMGDNKLEESLKKYVPDSKVVMGRAKRGIYAGRHIQFGNRVSED-- 60

Query: 126 TVSVKTVATKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPY 185
                    K+RRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPY
Sbjct: 61  ------GGNKTRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPY 120

Query: 186 HKMDTEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQM 245
           HKMDTE+GLFWKAKIEKMYEELG+ +VVFFSPEDE KFEQGF+ELKL+ERAAR+EARR +
Sbjct: 121 HKMDTEMGLFWKAKIEKMYEELGEMDVVFFSPEDEVKFEQGFKELKLAERAARREARRHI 180

Query: 246 YGSSTKHDQIEE 305
           YG S K  Q+EE
Sbjct: 181 YGGSGKQVQLEE 184

Query: 306  365
           
Sbjct: 241  184

Query: 366  425
           
Sbjct: 301  184

Query: 426  485
           
Sbjct: 361  184

Query: 486  545
           
Sbjct: 421  184

Query: 546  605
           
Sbjct: 481  184

Query: 606  633
           
Sbjct: 541  184

[Close]

BLAST of WMU28328 vs. TrEMBL
Match: A5BX00_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028074 PE=3 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 5.4e-58
Identity = 126/192 (65.62%), Postives = 146/192 (76.04%), Query Frame = -3


Query: 66  MAFRGKEMMKKILKKVGEKKFW-LLE*RIH*RNVF--RTAK***IGQSVVSMPAVTSNLA 125
           MAFR +EMMKKI+KK+G+ K    L+  +    V   R  +    G+ +     V+ +  
Sbjct: 1   MAFRSREMMKKIVKKMGDNKLEESLKKYVPDSKVVMGRAKRGIYAGRHIQFGNRVSED-- 60

Query: 126 TVSVKTVATKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPY 185
                    K+RRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPY
Sbjct: 61  ------GGNKTRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPY 120

Query: 186 HKMDTEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQM 245
           HKMDTE+GLFWKAKIEKMYEELG+ +VVFFSPEDE KFEQGF+ELKL+ERAAR+EARR +
Sbjct: 121 HKMDTEMGLFWKAKIEKMYEELGEMDVVFFSPEDEVKFEQGFKELKLAERAARREARRHI 180

Query: 246 YGSSTKHDQIEE 305
           YG S K  Q+EE
Sbjct: 181 YGGSGKQVQLEE 184

Query: 306  365
           
Sbjct: 241  184

Query: 366  425
           
Sbjct: 301  184

Query: 426  485
           
Sbjct: 361  184

Query: 486  545
           
Sbjct: 421  184

Query: 546  605
           
Sbjct: 481  184

Query: 606  633
           
Sbjct: 541  184

[Close]

BLAST of WMU28328 vs. NCBI nr
Match: gi|823122027|ref|XP_012469124.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Gossypium raimondii])

HSP 1 Score: 239.6 bits (610), Expect = 8.3e-60
Identity = 137/208 (65.87%), Postives = 151/208 (72.60%), Query Frame = -3


Query: 54  MAFRGKEMMKKILKKVGEKKFWLLE*RIH*RNVFRTAK***IGQSVVSMP--AVTSNLAT 113
           MAFRGKEMMKK+LKKVGEK            N+    K     Q   S+P   V  N A 
Sbjct: 1   MAFRGKEMMKKLLKKVGEK------------NLAHGVK----EQLQKSIPDSKVVMNRAK 60

Query: 114 VSV-------------KTVATKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKA 173
             +             +    KSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKA
Sbjct: 61  RGLYAGRHIQFGNRISEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKA 120

Query: 174 GGIDEYLLKTPYHKMDTEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLS 233
           GGIDEYLLKTPYHKMDTE+GLFWKAKIEKMYEELGQ EVVFFSPEDEAKFEQGF+ELKL+
Sbjct: 121 GGIDEYLLKTPYHKMDTEMGLFWKAKIEKMYEELGQMEVVFFSPEDEAKFEQGFKELKLA 180

Query: 234 ERAARKEARRQMYGSSTKHDQIEESQEN 293
           ERAAR++ARRQMYG S K ++IE  + +
Sbjct: 181 ERAARRDARRQMYGWSGKLEEIENRRSH 192

Query: 294  353
           
Sbjct: 241  192

Query: 354  413
           
Sbjct: 301  192

Query: 414  473
           
Sbjct: 361  192

Query: 474  533
           
Sbjct: 421  192

Query: 534  593
           
Sbjct: 481  192

Query: 594  633
           
Sbjct: 541  192

[Close]

BLAST of WMU28328 vs. NCBI nr
Match: gi|449456779|ref|XP_004146126.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis sativus])

HSP 1 Score: 233.4 bits (594), Expect = 5.9e-58
Identity = 132/199 (66.33%), Postives = 145/199 (72.86%), Query Frame = -3


Query: 57  MAFRGKEMMKKILKKVGEKKFWLLE*RIH*RNVFRTAK***IGQSVVSMPAVTSNLATVS 116
           MAFRGKEMMKKILKKVGE              V  + K       +V   A     A   
Sbjct: 1   MAFRGKEMMKKILKKVGENNLA--------PGVKDSLKKCIPDSKIVMGRANRGIYAGRH 60

Query: 117 VK-------TVATKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLL 176
           ++           KSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLL
Sbjct: 61  IRFGNRVSEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLL 120

Query: 177 KTPYHKMDTEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEA 236
           KTPYHKMDTE+GLFWK+KIE +YEELG+ EVVFFSPEDE KFEQ F+ELKLSERAAR+EA
Sbjct: 121 KTPYHKMDTELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREA 180

Query: 237 RRQMYGSSTKHDQIEESQE 296
           RRQMYGSS K +QI+E  E
Sbjct: 181 RRQMYGSSAKLNQIKEGGE 191

Query: 297  356
           
Sbjct: 241  191

Query: 357  416
           
Sbjct: 301  191

Query: 417  476
           
Sbjct: 361  191

Query: 477  536
           
Sbjct: 421  191

Query: 537  596
           
Sbjct: 481  191

Query: 597  633
           
Sbjct: 541  191

[Close]

BLAST of WMU28328 vs. NCBI nr
Match: gi|728825208|gb|KHG06146.1| (54S ribosomal L24, mitochondrial [Gossypium arboreum])

HSP 1 Score: 233.4 bits (594), Expect = 5.9e-58
Identity = 134/208 (64.42%), Postives = 149/208 (71.63%), Query Frame = -3


Query: 54  MAFRGKEMMKKILKKVGEKKFWLLE*RIH*RNVFRTAK***IGQSVVSMP--AVTSNLAT 113
           MAFRGKEMMKK+LKKVGEK            N+    K     Q   S+P   V  N A 
Sbjct: 1   MAFRGKEMMKKLLKKVGEK------------NLAHGVK----EQLQKSIPDSKVVMNRAK 60

Query: 114 VSV-------------KTVATKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKA 173
             +             +    KSRRSWKPNVQEKRLFSYILD  IRVKVTTHALRCIDKA
Sbjct: 61  RGLYAGRHIQFGNRISEDGGNKSRRSWKPNVQEKRLFSYILDHQIRVKVTTHALRCIDKA 120

Query: 174 GGIDEYLLKTPYHKMDTEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLS 233
           GGIDEYLLKTPYHKMDTE+GLFWKAKIEKMYEELGQ EVVFFSPEDEAKFEQGF++LKL+
Sbjct: 121 GGIDEYLLKTPYHKMDTEMGLFWKAKIEKMYEELGQMEVVFFSPEDEAKFEQGFKDLKLA 180

Query: 234 ERAARKEARRQMYGSSTKHDQIEESQEN 293
           ERAAR++ARRQMYG S K ++IE  + +
Sbjct: 181 ERAARRDARRQMYGWSGKLEEIENRRSH 192

Query: 294  353
           
Sbjct: 241  192

Query: 354  413
           
Sbjct: 301  192

Query: 414  473
           
Sbjct: 361  192

Query: 474  533
           
Sbjct: 421  192

Query: 534  593
           
Sbjct: 481  192

Query: 594  633
           
Sbjct: 541  192

[Close]

BLAST of WMU28328 vs. NCBI nr
Match: gi|659095444|ref|XP_008448584.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis melo])

HSP 1 Score: 231.1 bits (588), Expect = 2.9e-57
Identity = 133/204 (65.20%), Postives = 150/204 (73.53%), Query Frame = -3


Query: 54  MAFRGKEMMKKILKKVGEK----------KFWLLE*RIH*RNVFRTAK***IGQSVVSMP 113
           MAFRGKEMMKKILKKVGE           K W+ + +I      R       G+ +    
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKESLKKWVPDSKIVMGRANRGIY---AGRHIRFGN 60

Query: 114 AVTSNLATVSVKTVATKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDE 173
            V+ +           KSRR WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDE
Sbjct: 61  RVSED--------GGNKSRRKWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDE 120

Query: 174 YLLKTPYHKMDTEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAAR 233
           YLLKTPY KMDTE+GLFWKAKIE +YEELG+ EVVFFSPEDEAKFEQ F++LKLSERAAR
Sbjct: 121 YLLKTPYQKMDTELGLFWKAKIETLYEELGKMEVVFFSPEDEAKFEQRFKDLKLSERAAR 180

Query: 234 KEARRQMYGSST-KHDQIEESQEN 293
           KEARR++YGSST K +QI+E  E+
Sbjct: 181 KEARRKIYGSSTNKLNQIKEGGED 193

Query: 294  353
           
Sbjct: 241  193

Query: 354  413
           
Sbjct: 301  193

Query: 414  473
           
Sbjct: 361  193

Query: 474  533
           
Sbjct: 421  193

Query: 534  593
           
Sbjct: 481  193

Query: 594  633
           
Sbjct: 541  193

[Close]

BLAST of WMU28328 vs. NCBI nr
Match: gi|147865450|emb|CAN79404.1| (hypothetical protein VITISV_028074 [Vitis vinifera])

HSP 1 Score: 229.6 bits (584), Expect = 8.6e-57
Identity = 126/192 (65.62%), Postives = 146/192 (76.04%), Query Frame = -3


Query: 66  MAFRGKEMMKKILKKVGEKKFW-LLE*RIH*RNVF--RTAK***IGQSVVSMPAVTSNLA 125
           MAFR +EMMKKI+KK+G+ K    L+  +    V   R  +    G+ +     V+ +  
Sbjct: 1   MAFRSREMMKKIVKKMGDNKLEESLKKYVPDSKVVMGRAKRGIYAGRHIQFGNRVSED-- 60

Query: 126 TVSVKTVATKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPY 185
                    K+RRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPY
Sbjct: 61  ------GGNKTRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPY 120

Query: 186 HKMDTEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQM 245
           HKMDTE+GLFWKAKIEKMYEELG+ +VVFFSPEDE KFEQGF+ELKL+ERAAR+EARR +
Sbjct: 121 HKMDTEMGLFWKAKIEKMYEELGEMDVVFFSPEDEVKFEQGFKELKLAERAARREARRHI 180

Query: 246 YGSSTKHDQIEE 305
           YG S K  Q+EE
Sbjct: 181 YGGSGKQVQLEE 184

Query: 306  365
           
Sbjct: 241  184

Query: 366  425
           
Sbjct: 301  184

Query: 426  485
           
Sbjct: 361  184

Query: 486  545
           
Sbjct: 421  184

Query: 546  605
           
Sbjct: 481  184

Query: 606  633
           
Sbjct: 541  184

The following BLAST results are available for this feature:

BLAST of WMU28328 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G31460.1	1.2e-48	54.87	Ribosomal L28 family	[more]

BLAST of WMU28328 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL28_MAGMM	1.3e-07	52.08	50S ribosomal protein L28 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 1...	[more]
RL28_GLUDA	1.4e-06	40.63	50S ribosomal protein L28 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037...	[more]
RM28_XENLA	1.8e-06	30.00	39S ribosomal protein L28, mitochondrial OS=Xenopus laevis GN=mrpl28 PE=2 SV=1	[more]
RM24_SCHPO	9.0e-06	48.98	54S ribosomal protein L24, mitochondrial OS=Schizosaccharomyces pombe (strain 97...	[more]

BLAST of WMU28328 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0D2PMQ4_GOSRA	1.4e-61	65.87	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G069100 PE=3 SV=1	[more]
A0A0B0N4M4_GOSAR	9.8e-60	64.42	54S ribosomal L24, mitochondrial OS=Gossypium arboreum GN=F383_01611 PE=3 SV=1	[more]
A0A0A0L1P8_CUCSA	1.3e-59	66.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G005030 PE=3 SV=1	[more]
E0CQ81_VITVI	5.4e-58	65.63	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g14510 PE=3 SV=...	[more]
A5BX00_VITVI	5.4e-58	65.63	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028074 PE=3 SV=1	[more]

BLAST of WMU28328 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|823122027\|ref\|XP_012469124.1\|	8.3e-60	65.87	PREDICTED: 54S ribosomal protein L24, mitochondrial [Gossypium raimondii]	[more]
gi\|449456779\|ref\|XP_004146126.1\|	5.9e-58	66.33	PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis sativus]	[more]
gi\|728825208\|gb\|KHG06146.1\|	5.9e-58	64.42	54S ribosomal L24, mitochondrial [Gossypium arboreum]	[more]
gi\|659095444\|ref\|XP_008448584.1\|	2.9e-57	65.20	PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis melo]	[more]
gi\|147865450\|emb\|CAN79404.1\|	8.6e-57	65.63	hypothetical protein VITISV_028074 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR026569	Ribo_L28/L24

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla008867	Cla008867	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0105241	S1_0105241	EST
S1_0146753	S1_0146753	EST
S2_0047661	S2_0047661	EST
S3_0018596	S3_0018596	EST
S3_0052588	S3_0052588	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026569	Ribosomal protein L28/L24	PANTHER	PTHR13528	39S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL	coord: 18..178 score: 7.7
IPR026569	Ribosomal protein L28/L24	PFAM	PF00830	Ribosomal_L28	coord: 47..104 score: 1.4
None	No IPR available	GENE3D	G3DSA:2.30.170.40		coord: 44..119 score: 5.6
None	No IPR available	unknown	SSF143800	L28p-like	coord: 44..120 score: 6.47