WMU16990 (transcribed_cluster) Watermelon (97103) v1

NameWMU16990
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown protein
LocationChr1 : 27329269 .. 27329794 (+)
Sequence length532
The following sequences are available for this feature:

transcribed_cluster sequence

CGTCTCTCTCAATCCATATCAATCATAGCTTGAAATTCAAAAGTGATTCTGTTCTCAAAGTTAAAATTTACAAAGTAATACACATCAACATCTCAAATATACAAGCAAGATGTAGAAGGAAGCTCAATACAACTAAAGCATCAATCACCCTGTTGATTAGTGAGTGAGAAGCAACCAAAGATGTTCTCATATAATTTGATTGGAATGAATTGGTTTTCTTTATACCTTGAAAATTAAGTCATGTTAAGGCTCACAACTTGAAAAAGCCAAGGAGGATAATCTAGCATCTTCTTCTCTCCTCTATTACTTTCATTTTGGTAGCCTGAGGAATTTTTCAGTTCCCCCAAAAACCGCCATTTCTTGACCTTTAACTTTCTTTGTATCCGTACATCTTCTTCCCTCATGGCTGGACCCTGTTGAAGAAGAAGAGTGAGTGGTTACTCCTGAATCTTGAAGTATTGTAACTTGAAGGCCCTAGAGTTAGTTCGAGTTTCATTCTCGTTTATGATCTGCACAGCTCCATTAGTGGCTT
BLAST of WMU16990 vs. TrEMBL
Match: A0A0A0KIH1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G494990 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.3e-09
Identity = 43/96 (44.79%), Postives = 52/96 (54.17%), Query Frame = -3

Query: 237 NGAVQIINENETRTNSRAFKLQYFKIQE*PLTLLLQQGPAMREEDVRIQRKLKVKKWRFL 296
           NGA QIINE E           Y        T       +  +      +++K ++   L
Sbjct: 97  NGARQIINETELELTLGPSS--YNTSDSGTTTYSSSSTGSSHDRRCTDTKQVKGQEMAAL 156

Query: 297 GELKNSSGYQNESNRGEKKMLDYPPWLFQVVSLNMT 356
           G  +NSSG QN +NRGEKKMLDYPPWLFQVVSLNMT
Sbjct: 157 GVTENSSGCQNGNNRGEKKMLDYPPWLFQVVSLNMT 190

Query: 357 416
           
Sbjct: 217 190

Query: 417 476
           
Sbjct: 277 190

Query: 477 525
           
Sbjct: 337 190

BLAST of WMU16990 vs. NCBI nr
Match: gi|659079633|ref|XP_008440360.1| (PREDICTED: uncharacterized protein LOC103484836 [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 2.6e-09
Identity = 44/98 (44.90%), Postives = 53/98 (54.08%), Query Frame = -3

Query: 237 NGAVQIINENETRTNSRAFKLQYFKIQE*PLTLLLQQGPAMREEDVRIQ--RKLKVKKWR 296
           NGA QIINE E            +   +   T           E  R    +++K ++  
Sbjct: 96  NGAPQIINETELELTLGPSS---YNTSDSGTTTYSSSSTGSSHEGRRCTDTKQVKGQEMA 155

Query: 297 FLGELKNSSGYQNESNRGEKKMLDYPPWLFQVVSLNMT 356
            LG  +NSSG QN +NRGEKKMLDYPPWLFQVVSLNMT
Sbjct: 156 ALGVTENSSGCQNGNNRGEKKMLDYPPWLFQVVSLNMT 190

Query: 357 416
           
Sbjct: 216 190

Query: 417 476
           
Sbjct: 276 190

Query: 477 525
           
Sbjct: 336 190

BLAST of WMU16990 vs. NCBI nr
Match: gi|778718594|ref|XP_004141880.2| (PREDICTED: uncharacterized protein LOC101207586 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 3.4e-09
Identity = 43/96 (44.79%), Postives = 52/96 (54.17%), Query Frame = -3

Query: 237 NGAVQIINENETRTNSRAFKLQYFKIQE*PLTLLLQQGPAMREEDVRIQRKLKVKKWRFL 296
           NGA QIINE E           Y        T       +  +      +++K ++   L
Sbjct: 97  NGARQIINETELELTLGPSS--YNTSDSGTTTYSSSSTGSSHDRRCTDTKQVKGQEMAAL 156

Query: 297 GELKNSSGYQNESNRGEKKMLDYPPWLFQVVSLNMT 356
           G  +NSSG QN +NRGEKKMLDYPPWLFQVVSLNMT
Sbjct: 157 GVTENSSGCQNGNNRGEKKMLDYPPWLFQVVSLNMT 190

Query: 357 416
           
Sbjct: 217 190

Query: 417 476
           
Sbjct: 277 190

Query: 477 525
           
Sbjct: 337 190

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KIH1_CUCSA2.3e-0944.79Uncharacterized protein OS=Cucumis sativus GN=Csa_6G494990 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659079633|ref|XP_008440360.1|2.6e-0944.90PREDICTED: uncharacterized protein LOC103484836 [Cucumis melo][more]
gi|778718594|ref|XP_004141880.2|3.4e-0944.79PREDICTED: uncharacterized protein LOC101207586 [Cucumis sativus][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla014012Cla014012gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0085341S1_0085341EST
S1_0118591S1_0118591EST
S4_0000187S4_0000187EST
S4_0082543S4_0082543EST