CU170677 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU170677
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Receptor-like protein kinase
Location	Chr6 : 6202485 .. 6202708 (+)
Sequence length	222

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GGGAAGTTCGGCTTCGAATTGCTGTTGGGGATTGCTAGAGGGCTTCAGTTTCTCCATTTGGAATGTAACCCTCGAATTCTTCACTGTAATTTGAAGCCTTCAAACATTCTCCTAGATGCAGAGTTCGAACCAAGATTGGTTGATTTTGGGTTAACGAATCTCATTCCTGATTTTCATACATCACCTTCTTTGTACACTGCTCCCGGTGTCTTAACACTCCAG

Library


Library category	ESTs
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU170677 vs. Swiss-Prot
Match: CRN_ARATH (Inactive leucine-rich repeat receptor-like protein kinase CORYNE OS=Arabidopsis thaliana GN=CRN PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.8e-15
Identity = 37/71 (52.11%), Postives = 49/71 (69.01%), Query Frame = 1


Query: 4   KFGFELLL----GIARGLQFLHLECNPRILHCNLKPSNILLDAEFEPRLVDFGLTNLIPD 63
           + G+E+ L    GI +GLQ+LH  C  +ILH NLKP+N++LD+EFEPRL D GL  ++P 
Sbjct: 222 ELGWEIRLRVAVGIVKGLQYLHFSCETQILHYNLKPTNVMLDSEFEPRLADCGLAKIMPS 281

Query: 64  FHTSPSLYTAP 123
            HT+ S Y+AP
Sbjct: 282 SHTAVSCYSAP 292

Query: 124  183
           
Sbjct: 342  292

Query: 184  205
           
Sbjct: 402  292

[Close]

BLAST of CU170677 vs. Swiss-Prot
Match: Y2913_ARATH (G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 OS=Arabidopsis thaliana GN=At2g19130 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.4e-11
Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 1


Query: 4   KFGFELLLGIARGLQFLHLECNPRILHCNLKPSNILLDAEFEPRLVDFGLTNLI 63
           K  F++ LG ARGL +LH EC   I+HC++KP NILLD++F P++ DFGL  L+
Sbjct: 591 KLRFQIALGTARGLAYLHDECRDCIIHCDIKPENILLDSQFCPKVADFGLAKLV 644

Query: 64   123
           
Sbjct: 651  644

Query: 124  166
           
Sbjct: 711  644

[Close]

BLAST of CU170677 vs. Swiss-Prot
Match: LERK3_ORYSI (G-type lectin S-receptor-like serine/threonine-protein kinase LECRK3 OS=Oryza sativa subsp. indica GN=LECRK3 PE=3 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 4.4e-11
Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = 1


Query: 16  ELLLGIARGLQFLHLECNPRILHCNLKPSNILLDAEFEPRLVDFGLTNLIP 75
           ++ LG+ARGL +LH ECN +I+HC++KP NILLD  F  ++ DFGL  L+P
Sbjct: 621 QVALGVARGLLYLHEECNKQIIHCDMKPQNILLDDNFAAKISDFGLAKLLP 671

Query: 76   135
           
Sbjct: 681  671

Query: 136  169
           
Sbjct: 741  671

[Close]

BLAST of CU170677 vs. Swiss-Prot
Match: LERK3_ORYSJ (G-type lectin S-receptor-like serine/threonine-protein kinase LECRK3 OS=Oryza sativa subsp. japonica GN=LECRK3 PE=3 SV=2)

HSP 1 Score: 67.8 bits (164), Expect = 5.8e-11
Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = 1


Query: 16  ELLLGIARGLQFLHLECNPRILHCNLKPSNILLDAEFEPRLVDFGLTNLIP 75
           ++ LG+ARGL +LH ECN +I+HC++KP NILLD  F  ++ DFGL  L+P
Sbjct: 621 QVALGVARGLLYLHEECNKQIIHCDMKPQNILLDDNFVAKISDFGLAKLLP 671

Query: 76   135
           
Sbjct: 681  671

Query: 136  169
           
Sbjct: 741  671

[Close]

BLAST of CU170677 vs. Swiss-Prot
Match: KPRO_MAIZE (Putative receptor protein kinase ZmPK1 OS=Zea mays GN=PK1 PE=2 SV=2)

HSP 1 Score: 67.0 bits (162), Expect = 9.8e-11
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 1


Query: 13  FELLLGIARGLQFLHLECNPRILHCNLKPSNILLDAEFEPRLVDFGLTNLI 72
           F + LG+A+GL +LH EC   ++HC++KP NILLD  FEP++ DFGL  L+
Sbjct: 633 FNIALGVAKGLAYLHHECLEWVIHCDVKPENILLDQAFEPKITDFGLVKLL 683

Query: 73   132
           
Sbjct: 693  683

Query: 133  166
           
Sbjct: 753  683

[Close]

BLAST of CU170677 vs. TrEMBL
Match: A0A0A0KAB3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091860 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.2e-26
Identity = 59/65 (90.77%), Postives = 61/65 (93.85%), Query Frame = 1


Query: 19  LLLGIARGLQFLHLECNPRILHCNLKPSNILLDAEFEPRLVDFGLTNLIPDFHTSPSLYT 78
           + +GIARGLQFLH ECNPRILHCNLKPSNILLDAEFEPRLVDFGLTNLIPDFHTSPSLYT
Sbjct: 212 IAVGIARGLQFLHFECNPRILHCNLKPSNILLDAEFEPRLVDFGLTNLIPDFHTSPSLYT 271

Query: 79  APGVL 138
           AP  L
Sbjct: 272 APECL 276

Query: 139  198
           
Sbjct: 332  276

Query: 199  214
           
Sbjct: 392  276

[Close]

BLAST of CU170677 vs. TrEMBL
Match: E5GB59_CUCME (Receptor-like protein kinase OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.2e-25
Identity = 57/65 (87.69%), Postives = 60/65 (92.31%), Query Frame = 1


Query: 19  LLLGIARGLQFLHLECNPRILHCNLKPSNILLDAEFEPRLVDFGLTNLIPDFHTSPSLYT 78
           + +GIARGLQFLH ECNPRILHCNLKPSNILLDA+FEPRLVDFGLTNLIPDFHTS SLYT
Sbjct: 212 IAVGIARGLQFLHFECNPRILHCNLKPSNILLDADFEPRLVDFGLTNLIPDFHTSASLYT 271

Query: 79  APGVL 138
           AP  L
Sbjct: 272 APECL 276

Query: 139  198
           
Sbjct: 332  276

Query: 199  214
           
Sbjct: 392  276

[Close]

BLAST of CU170677 vs. TrEMBL
Match: A0A0D9YDF9_9ORYZ (Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.7e-09
Identity = 32/67 (47.76%), Postives = 47/67 (70.15%), Query Frame = 1


Query: 13   FELLLGIARGLQFLHLECNPRILHCNLKPSNILLDAEFEPRLVDFGLTNLIPDFHTSPSL 72
            F++ +GIARGL++LH  CN RI+H ++KP NILLD EF P++ DFG+  L  +  ++ SL
Sbjct: 1074 FDIAVGIARGLEYLHRGCNTRIVHFDIKPHNILLDQEFCPKISDFGMAKLCANKESTISL 1133

Query: 73   YTAPGVL 132
              A G +
Sbjct: 1134 IGARGTI 1140

Query: 133   192
            
Sbjct: 1194  1140

Query: 193   214
            
Sbjct: 1254  1140

[Close]

BLAST of CU170677 vs. TrEMBL
Match: A0A0D9YDF9_9ORYZ (Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-08
Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = 1


Query: 13  FELLLGIARGLQFLHLECNPRILHCNLKPSNILLDAEFEPRLVDFGLTNLIPDFHTSPSL 72
           F++ +GIARGL++LH  CN RI+H ++KP NILLD EF P++ DFG+  L  +  +  S+
Sbjct: 453 FDVAVGIARGLEYLHRGCNTRIVHFDIKPHNILLDQEFCPKISDFGMAKLCANKESIISI 512

Query: 73  YTAPGVL 132
             A G +
Sbjct: 513 AGARGTI 519

Query: 133  192
           
Sbjct: 573  519

Query: 193  214
           
Sbjct: 633  519

HSP 2 Score: 60.1 bits (144), Expect = 1.3e-06
Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 1


Query: 13   FELLLGIARGLQFLHLECNPRILHCNLKPSNILLDAEFEPRLVDFGLTNL 72
            +E+ +G+ARGL+FLH   N  I+H  +KP NILLD E  P++ DFG+ NL
Sbjct: 1843 YEIAIGVARGLEFLHGSGNANIMHLKIKPINILLDQELCPKISDFGVANL 1892

Query: 73    132
            
Sbjct: 1903  1892

Query: 133   163
            
Sbjct: 1963  1892

HSP 3 Score: 69.7 bits (169), Expect = 1.7e-09
Identity = 32/67 (47.76%), Postives = 47/67 (70.15%), Query Frame = 1


Query: 13   FELLLGIARGLQFLHLECNPRILHCNLKPSNILLDAEFEPRLVDFGLTNLIPDFHTSPSL 72
            F++ +GIARGL++LH  CN RI+H ++KP NILLD EF P++ DFG+  L  +  ++ SL
Sbjct: 1050 FDIAVGIARGLEYLHRGCNTRIVHFDIKPHNILLDQEFCPKISDFGMAKLCANKESTISL 1109

Query: 73   YTAPGVL 132
              A G +
Sbjct: 1110 IGARGTI 1116

Query: 133   192
            
Sbjct: 1170  1116

Query: 193   214
            
Sbjct: 1230  1116

[Close]

BLAST of CU170677 vs. TrEMBL
Match: A0A0D9YDF8_9ORYZ (Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-08
Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = 1


Query: 13  FELLLGIARGLQFLHLECNPRILHCNLKPSNILLDAEFEPRLVDFGLTNLIPDFHTSPSL 72
           F++ +GIARGL++LH  CN RI+H ++KP NILLD EF P++ DFG+  L  +  +  S+
Sbjct: 429 FDVAVGIARGLEYLHRGCNTRIVHFDIKPHNILLDQEFCPKISDFGMAKLCANKESIISI 488

Query: 73  YTAPGVL 132
             A G +
Sbjct: 489 AGARGTI 495

Query: 133  192
           
Sbjct: 549  495

Query: 193  214
           
Sbjct: 609  495

HSP 2 Score: 60.1 bits (144), Expect = 1.3e-06
Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 1


Query: 13   FELLLGIARGLQFLHLECNPRILHCNLKPSNILLDAEFEPRLVDFGLTNL 72
            +E+ +G+ARGL+FLH   N  I+H  +KP NILLD E  P++ DFG+ NL
Sbjct: 1819 YEIAIGVARGLEFLHGSGNANIMHLKIKPINILLDQELCPKISDFGVANL 1868

Query: 73    132
            
Sbjct: 1879  1868

Query: 133   163
            
Sbjct: 1939  1868

HSP 3 Score: 69.3 bits (168), Expect = 2.2e-09
Identity = 28/50 (56.00%), Postives = 40/50 (80.00%), Query Frame = 1


Query: 16   ELLLGIARGLQFLHLECNPRILHCNLKPSNILLDAEFEPRLVDFGLTNLI 75
            ++++GIARGL +LH EC   I+HC++KP NILLDAEF P++ DFG+  L+
Sbjct: 1086 QIVVGIARGLAYLHEECRDSIIHCDIKPENILLDAEFCPKIADFGMAKLL 1135

Query: 76    135
            
Sbjct: 1146  1135

Query: 136   166
            
Sbjct: 1206  1135

[Close]

BLAST of CU170677 vs. NCBI nr
Match: gi|449445592|ref|XP_004140556.1| (PREDICTED: inactive leucine-rich repeat receptor-like protein kinase CORYNE [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 7.5e-27
Identity = 59/65 (90.77%), Postives = 61/65 (93.85%), Query Frame = 1


Query: 19  LLLGIARGLQFLHLECNPRILHCNLKPSNILLDAEFEPRLVDFGLTNLIPDFHTSPSLYT 78
           + +GIARGLQFLH ECNPRILHCNLKPSNILLDAEFEPRLVDFGLTNLIPDFHTSPSLYT
Sbjct: 212 IAVGIARGLQFLHFECNPRILHCNLKPSNILLDAEFEPRLVDFGLTNLIPDFHTSPSLYT 271

Query: 79  APGVL 138
           AP  L
Sbjct: 272 APECL 276

Query: 139  198
           
Sbjct: 332  276

Query: 199  214
           
Sbjct: 392  276

[Close]

BLAST of CU170677 vs. NCBI nr
Match: gi|659119914|ref|XP_008459910.1| (PREDICTED: inactive leucine-rich repeat receptor-like protein kinase CORYNE [Cucumis melo])

HSP 1 Score: 123.6 bits (309), Expect = 1.4e-25
Identity = 57/65 (87.69%), Postives = 60/65 (92.31%), Query Frame = 1


Query: 19  LLLGIARGLQFLHLECNPRILHCNLKPSNILLDAEFEPRLVDFGLTNLIPDFHTSPSLYT 78
           + +GIARGLQFLH ECNPRILHCNLKPSNILLDA+FEPRLVDFGLTNLIPDFHTS SLYT
Sbjct: 212 IAVGIARGLQFLHFECNPRILHCNLKPSNILLDADFEPRLVDFGLTNLIPDFHTSASLYT 271

Query: 79  APGVL 138
           AP  L
Sbjct: 272 APECL 276

Query: 139  198
           
Sbjct: 332  276

Query: 199  214
           
Sbjct: 392  276

[Close]

BLAST of CU170677 vs. NCBI nr
Match: gi|961506084|gb|ALS40437.1| (leucine-rich repeat receptor-like protein kinase CORYNE [Dimocarpus longan])

HSP 1 Score: 87.8 bits (216), Expect = 8.6e-15
Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = 1


Query: 19  LLLGIARGLQFLHLECNPRILHCNLKPSNILLDAEFEPRLVDFGLTNLIPDFHTSPSLYT 78
           + +G+ +GLQ+LH  CNP+ILHCNLKPSN++LD EFEPRL D GL  L+P+   + S Y 
Sbjct: 230 IAVGVIKGLQYLHFTCNPQILHCNLKPSNVMLDGEFEPRLADCGLPKLVPNSDRATSAYN 289

Query: 79  AP 138
           AP
Sbjct: 290 AP 291

Query: 139  198
           
Sbjct: 350  291

Query: 199  205
           
Sbjct: 410  291

[Close]

BLAST of CU170677 vs. NCBI nr
Match: gi|661877114|emb|CDP18976.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 87.8 bits (216), Expect = 8.6e-15
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 1


Query: 19  LLLGIARGLQFLHLECNPRILHCNLKPSNILLDAEFEPRLVDFGLTNLIPDFHTSPSLYT 78
           + +GI +GLQ+LH  CNP ILHCNLKP+N++LDAE EPRL D GL  +IP F+   S Y+
Sbjct: 227 IAIGIVKGLQYLHFSCNPTILHCNLKPTNVMLDAESEPRLADCGLAKIIPSFNRMASGYS 286

Query: 79  AP 138
           AP
Sbjct: 287 AP 288

Query: 139  198
           
Sbjct: 347  288

Query: 199  205
           
Sbjct: 407  288

[Close]

BLAST of CU170677 vs. NCBI nr
Match: gi|747079800|ref|XP_011087124.1| (PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD3-like [Sesamum indicum])

HSP 1 Score: 86.7 bits (213), Expect = 1.9e-14
Identity = 37/67 (55.22%), Postives = 49/67 (73.13%), Query Frame = 1


Query: 4    KFGFELLLGIARGLQFLHLECNPRILHCNLKPSNILLDAEFEPRLVDFGLTNLIPDFHTS 63
            +F   + +GI +GL +LH  C+PR LH NLKPSN++LD+EFEPRL D GL  +IP+FH +
Sbjct: 1105 EFRLRIAVGIIKGLYYLHFACDPRRLHYNLKPSNVILDSEFEPRLADCGLATIIPNFHRA 1164

Query: 64   PSLYTAP 123
             S Y AP
Sbjct: 1165 ASGYNAP 1171

Query: 124   183
            
Sbjct: 1225  1171

Query: 184   205
            
Sbjct: 1285  1171

The following BLAST results are available for this feature:

BLAST of CU170677 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CRN_ARATH	3.8e-15	52.11	Inactive leucine-rich repeat receptor-like protein kinase CORYNE OS=Arabidopsis ...	[more]
Y2913_ARATH	3.4e-11	53.70	G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 OS=Arabi...	[more]
LERK3_ORYSI	4.4e-11	54.90	G-type lectin S-receptor-like serine/threonine-protein kinase LECRK3 OS=Oryza sa...	[more]
LERK3_ORYSJ	5.8e-11	54.90	G-type lectin S-receptor-like serine/threonine-protein kinase LECRK3 OS=Oryza sa...	[more]
KPRO_MAIZE	9.8e-11	52.94	Putative receptor protein kinase ZmPK1 OS=Zea mays GN=PK1 PE=2 SV=2	[more]

BLAST of CU170677 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAB3_CUCSA	1.2e-26	90.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091860 PE=4 SV=1	[more]
E5GB59_CUCME	2.2e-25	87.69	Receptor-like protein kinase OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0D9YDF9_9ORYZ	1.7e-09	47.76	Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1	[more]
A0A0D9YDF9_9ORYZ	1.1e-08	46.27	Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1	[more]
A0A0D9YDF8_9ORYZ	1.1e-08	46.27	Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1	[more]

BLAST of CU170677 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445592\|ref\|XP_004140556.1\|	7.5e-27	90.77	PREDICTED: inactive leucine-rich repeat receptor-like protein kinase CORYNE [Cuc...	[more]
gi\|659119914\|ref\|XP_008459910.1\|	1.4e-25	87.69	PREDICTED: inactive leucine-rich repeat receptor-like protein kinase CORYNE [Cuc...	[more]
gi\|961506084\|gb\|ALS40437.1\|	8.6e-15	58.06	leucine-rich repeat receptor-like protein kinase CORYNE [Dimocarpus longan]	[more]
gi\|661877114\|emb\|CDP18976.1\|	8.6e-15	59.68	unnamed protein product [Coffea canephora]	[more]
gi\|747079800\|ref\|XP_011087124.1\|	1.9e-14	55.22	PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD3-like [Sesamum ...	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR000719	Prot_kinase_dom
IPR011009	Kinase-like_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0004672	protein kinase activity
GO:0005524	ATP binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006468	protein phosphorylation

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G091860	Csa6G091860	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
H0139860	H0139860	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000719	Protein kinase domain	PFAM	PF00069	Pkinase	coord: 8..59 score: 2.6
IPR000719	Protein kinase domain	PROFILE	PS50011	PROTEIN_KINASE_DOM	coord: 1..74 score: 1
IPR011009	Protein kinase-like domain	unknown	SSF56112	Protein kinase-like (PK-like)	coord: 7..72 score: 1.48
None	No IPR available	GENE3D	G3DSA:1.10.510.10		coord: 7..62 score: 9.1
None	No IPR available	PANTHER	PTHR27000	FAMILY NOT NAMED	coord: 9..57 score: 1.2
None	No IPR available	PANTHER	PTHR27000:SF71	SUBFAMILY NOT NAMED	coord: 9..57 score: 1.2