CU166019 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU166019
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 26773671 .. 26773930 (+)
Sequence length	262

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CATGTCTCCTTCTCGGATTGCTCTGTTAAATCTGCACGGACGCATCGAACTCTGTCGACGGAGGGCTTTACCGACGAAGTGGTGACAACTTGGCCGACAGCTCTGTAACCGTCTGGCGGTGTCGGGGACCAGATGTAGCCGTCGGTGTCGCGTTTGATGTTGGATTTTTCGCTGGTCCATACGAGGGTGAAGTCGACGGGCTTCTTGAGGGCGTCACCAGCAAGAGAGTCGTCTCTTCCAACGAGAATTCGGGCAAAGAGGG

Library


Library category	ESTs
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU166019 vs. TrEMBL
Match: A0A0A0L9X8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G708680 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 2.1e-40
Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = -3


Query: 3   FARILVGRDDSLAGDALKKPVDFTLVWTSEKSNIKRDTDGYIWSPTPPDGYRAVGQVVTT 62
           FARILVGRDDSLAGDALKKPVDFTLVWTSEKSNIKRDTDGYIWSPTPPDGYRAVG VVTT
Sbjct: 98  FARILVGRDDSLAGDALKKPVDFTLVWTSEKSNIKRDTDGYIWSPTPPDGYRAVGHVVTT 157

Query: 63  SSVKPSVDRVRCVRADLTEQSEKET 122
           SSVKPSVDRVRCVRADLTEQSEKET
Sbjct: 158 SSVKPSVDRVRCVRADLTEQSEKET 182

Query: 123  182
           
Sbjct: 218  182

Query: 183  242
           
Sbjct: 278  182

Query: 243  258
           
Sbjct: 338  182

[Close]

BLAST of CU166019 vs. TrEMBL
Match: A0A0A0LEZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G708170 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 6.7e-26
Identity = 58/86 (67.44%), Postives = 70/86 (81.40%), Query Frame = -3


Query: 6   LFARILVGRDDSLAG-DALKKPVDFTLVWTSEKSNIKRDTDGYIWSPTPPDGYRAVGQVV 65
           LF  +L G+D+   G DALKKPVD+TLVW++E S IKRD +GYIWSPTPPDGYRAVG VV
Sbjct: 101 LFGSVLAGKDNGSDGEDALKKPVDYTLVWSTESSKIKRDGNGYIWSPTPPDGYRAVGHVV 160

Query: 66  TTSSVKPSVDRVRCVRADLTEQSEKE 125
           T S  KPSVD++RCVR++LTE+ E E
Sbjct: 161 TASPEKPSVDKIRCVRSELTEECENE 186

Query: 126  185
           
Sbjct: 221  186

Query: 186  245
           
Sbjct: 281  186

Query: 246  261
           
Sbjct: 341  186

[Close]

BLAST of CU166019 vs. TrEMBL
Match: A0A0B2SQC7_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_019370 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 5.3e-23
Identity = 51/89 (57.30%), Postives = 70/89 (78.65%), Query Frame = -3


Query: 3   LFARILVGRDDSLAGD---ALKKPVDFTLVWTSEKSNIKRDTDGYIWSPTPPDGYRAVGQ 62
           LF  ILV +D++ +GD   ALKKP+D+TLVW+S+   IK+D DGYIW PT PDGY+ +G 
Sbjct: 94  LFGSILVAKDETSSGDNNGALKKPIDYTLVWSSKSQKIKQDKDGYIWLPTAPDGYKTLGH 153

Query: 63  VVTTSSVKPSVDRVRCVRADLTEQSEKET 122
           VVTT+  KPS+D++RCVR+DLT+Q E+ +
Sbjct: 154 VVTTTPEKPSLDKIRCVRSDLTDQCERSS 182

Query: 123  182
           
Sbjct: 214  182

Query: 183  242
           
Sbjct: 274  182

Query: 243  261
           
Sbjct: 334  182

[Close]

BLAST of CU166019 vs. TrEMBL
Match: I1MJE2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G263600 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 5.3e-23
Identity = 51/89 (57.30%), Postives = 70/89 (78.65%), Query Frame = -3


Query: 3   LFARILVGRDDSLAGD---ALKKPVDFTLVWTSEKSNIKRDTDGYIWSPTPPDGYRAVGQ 62
           LF  ILV +D++ +GD   ALKKP+D+TLVW+S+   IK+D DGYIW PT PDGY+ +G 
Sbjct: 94  LFGSILVAKDETSSGDNNGALKKPIDYTLVWSSKSQKIKQDKDGYIWLPTAPDGYKTLGH 153

Query: 63  VVTTSSVKPSVDRVRCVRADLTEQSEKET 122
           VVTT+  KPS+D++RCVR+DLT+Q E+ +
Sbjct: 154 VVTTTPEKPSLDKIRCVRSDLTDQCERSS 182

Query: 123  182
           
Sbjct: 214  182

Query: 183  242
           
Sbjct: 274  182

Query: 243  261
           
Sbjct: 334  182

[Close]

BLAST of CU166019 vs. TrEMBL
Match: B9SC61_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1408060 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 9.1e-23
Identity = 53/85 (62.35%), Postives = 69/85 (81.18%), Query Frame = -3


Query: 6   LFARILVGRDDSLAGDALKKPVDFTLVWTSEKSNIKRDTDGYIWSPTPPDGYRAVGQVVT 65
           L+  +L G+DD  AG AL+KP+D+TLVW+SE   IK+D+ GYIW PT PDGYRAVG VVT
Sbjct: 98  LYGWVLAGKDD--AGGALEKPIDYTLVWSSESLKIKQDSIGYIWLPTAPDGYRAVGLVVT 157

Query: 66  TSSVKPSVDRVRCVRADLTEQSEKE 125
           +S  KPS+D++RCVR+DLT+Q EK+
Sbjct: 158 SSPEKPSLDKMRCVRSDLTDQCEKD 180

Query: 126  185
           
Sbjct: 218  180

Query: 186  245
           
Sbjct: 278  180

Query: 246  261
           
Sbjct: 338  180

[Close]

BLAST of CU166019 vs. NCBI nr
Match: gi|778682898|ref|XP_004151268.2| (PREDICTED: uncharacterized protein LOC101218337 [Cucumis sativus])

HSP 1 Score: 172.2 bits (435), Expect = 4.0e-40
Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = -3


Query: 3   FARILVGRDDSLAGDALKKPVDFTLVWTSEKSNIKRDTDGYIWSPTPPDGYRAVGQVVTT 62
           FARILVGRDDSLAGDALKKPVDFTLVWTSEKSNIKRDTDGYIWSPTPPDGYRAVG VVTT
Sbjct: 98  FARILVGRDDSLAGDALKKPVDFTLVWTSEKSNIKRDTDGYIWSPTPPDGYRAVGHVVTT 157

Query: 63  SSVKPSVDRVRCVRADLTEQSEKET 122
           SSVKPSVDRVRCVRADLTEQSEKET
Sbjct: 158 SSVKPSVDRVRCVRADLTEQSEKET 182

Query: 123  182
           
Sbjct: 218  182

Query: 183  242
           
Sbjct: 278  182

Query: 243  258
           
Sbjct: 338  182

[Close]

BLAST of CU166019 vs. NCBI nr
Match: gi|659123607|ref|XP_008461747.1| (PREDICTED: uncharacterized protein LOC103500279 [Cucumis melo])

HSP 1 Score: 169.9 bits (429), Expect = 2.0e-39
Identity = 83/85 (97.65%), Postives = 83/85 (97.65%), Query Frame = -3


Query: 3   FARILVGRDDSLAGDALKKPVDFTLVWTSEKSNIKRDTDGYIWSPTPPDGYRAVGQVVTT 62
           FARILVGRDDSLAGDALKKPVDFTLVWTSEKSNIKRDTDGYIWSPTPPDGYRAVG VVTT
Sbjct: 145 FARILVGRDDSLAGDALKKPVDFTLVWTSEKSNIKRDTDGYIWSPTPPDGYRAVGHVVTT 204

Query: 63  SSVKPSVDRVRCVRADLTEQSEKET 122
           SS KPSVDRVRCVRADLTEQSEKET
Sbjct: 205 SSEKPSVDRVRCVRADLTEQSEKET 229

Query: 123  182
           
Sbjct: 265  229

Query: 183  242
           
Sbjct: 325  229

Query: 243  258
           
Sbjct: 385  229

[Close]

BLAST of CU166019 vs. NCBI nr
Match: gi|659123609|ref|XP_008461748.1| (PREDICTED: uncharacterized protein LOC103500280 [Cucumis melo])

HSP 1 Score: 125.9 bits (315), Expect = 3.3e-26
Identity = 59/86 (68.60%), Postives = 71/86 (82.56%), Query Frame = -3


Query: 6   LFARILVGRDDSLAGD-ALKKPVDFTLVWTSEKSNIKRDTDGYIWSPTPPDGYRAVGQVV 65
           LF  +L G+D+   G+ ALKKPVD+TLVW++E S IKRD +GYIWSPTPPDGYRAVG VV
Sbjct: 101 LFGFVLAGKDNGFDGEEALKKPVDYTLVWSTESSKIKRDGNGYIWSPTPPDGYRAVGHVV 160

Query: 66  TTSSVKPSVDRVRCVRADLTEQSEKE 125
           T S  KPSVD++RCVR+DLTE+ EKE
Sbjct: 161 TASREKPSVDKIRCVRSDLTEECEKE 186

Query: 126  185
           
Sbjct: 221  186

Query: 186  245
           
Sbjct: 281  186

Query: 246  261
           
Sbjct: 341  186

[Close]

BLAST of CU166019 vs. NCBI nr
Match: gi|449467108|ref|XP_004151267.1| (PREDICTED: uncharacterized protein LOC101218097 [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 1.3e-25
Identity = 58/86 (67.44%), Postives = 70/86 (81.40%), Query Frame = -3


Query: 6   LFARILVGRDDSLAG-DALKKPVDFTLVWTSEKSNIKRDTDGYIWSPTPPDGYRAVGQVV 65
           LF  +L G+D+   G DALKKPVD+TLVW++E S IKRD +GYIWSPTPPDGYRAVG VV
Sbjct: 101 LFGSVLAGKDNGSDGEDALKKPVDYTLVWSTESSKIKRDGNGYIWSPTPPDGYRAVGHVV 160

Query: 66  TTSSVKPSVDRVRCVRADLTEQSEKE 125
           T S  KPSVD++RCVR++LTE+ E E
Sbjct: 161 TASPEKPSVDKIRCVRSELTEECENE 186

Query: 126  185
           
Sbjct: 221  186

Query: 186  245
           
Sbjct: 281  186

Query: 246  261
           
Sbjct: 341  186

[Close]

BLAST of CU166019 vs. NCBI nr
Match: gi|743759958|ref|XP_010934618.1| (PREDICTED: uncharacterized protein LOC105054732 [Elaeis guineensis])

HSP 1 Score: 115.2 bits (287), Expect = 5.8e-23
Identity = 54/85 (63.53%), Postives = 69/85 (81.18%), Query Frame = -3


Query: 6   LFARILVGRDDSLAGDALKKPVDFTLVWTSEKSNIKRDTDGYIWSPTPPDGYRAVGQVVT 65
           LF  +LV RD +  G+ L KPVD+TLVW+SE SN+KRD +GY W PTPP+GY+A+G +VT
Sbjct: 99  LFGWVLVARDTTNGGN-LAKPVDYTLVWSSESSNLKRDGNGYFWLPTPPEGYKALGLLVT 158

Query: 66  TSSVKPSVDRVRCVRADLTEQSEKE 125
           +SS KPS+DRVRCVRADLT+Q E +
Sbjct: 159 SSSKKPSLDRVRCVRADLTDQCEND 182

Query: 126  185
           
Sbjct: 219  182

Query: 186  245
           
Sbjct: 279  182

Query: 246  261
           
Sbjct: 339  182

The following BLAST results are available for this feature:

BLAST of CU166019 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9X8_CUCSA	2.1e-40	98.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G708680 PE=4 SV=1	[more]
A0A0A0LEZ5_CUCSA	6.7e-26	67.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G708170 PE=4 SV=1	[more]
A0A0B2SQC7_GLYSO	5.3e-23	57.30	Uncharacterized protein OS=Glycine soja GN=glysoja_019370 PE=4 SV=1	[more]
I1MJE2_SOYBN	5.3e-23	57.30	Uncharacterized protein OS=Glycine max GN=GLYMA_15G263600 PE=4 SV=1	[more]
B9SC61_RICCO	9.1e-23	62.35	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1408060 PE=4 SV=1	[more]

BLAST of CU166019 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778682898\|ref\|XP_004151268.2\|	4.0e-40	98.82	PREDICTED: uncharacterized protein LOC101218337 [Cucumis sativus]	[more]
gi\|659123607\|ref\|XP_008461747.1\|	2.0e-39	97.65	PREDICTED: uncharacterized protein LOC103500279 [Cucumis melo]	[more]
gi\|659123609\|ref\|XP_008461748.1\|	3.3e-26	68.60	PREDICTED: uncharacterized protein LOC103500280 [Cucumis melo]	[more]
gi\|449467108\|ref\|XP_004151267.1\|	1.3e-25	67.44	PREDICTED: uncharacterized protein LOC101218097 [Cucumis sativus]	[more]
gi\|743759958\|ref\|XP_010934618.1\|	5.8e-23	63.53	PREDICTED: uncharacterized protein LOC105054732 [Elaeis guineensis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR009291	Vps62

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa3G708680	Csa3G708680	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
H0097483	H0097483	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009291	Vacuolar protein sorting-associated protein 62	PFAM	PF06101	DUF946	coord: 2..87 score: 2.2
None	No IPR available	PANTHER	PTHR17204	PRE-MRNA PROCESSING PROTEIN PRP39-RELATED	coord: 2..84 score: 3.8
None	No IPR available	PANTHER	PTHR17204:SF28	F1C9.34 PROTEIN-RELATED	coord: 2..84 score: 3.8