CU146189 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU146189
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 13980368 .. 13983350 (+)
Sequence length	242

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CTGCTGGGTAGGACTATTTGATGAAACTGCAGGAGGCCTTTGAGGAAACTGGACTCCGGCACTCACCAAATCATAATATGCTGAATAATACTGAGGGAACTTTCCAGAAGCACCGCCAAGAGCTGTCTGTGTGGCATCTAGAAGAAGAAATATTCTCTCTCGCACTGGTAAATCAGACTTTTTCTTCACTATCTTCACAAGAATAGGGAGAACCCCTGAATCAATCACCTGCTTATGTATTG

Library


Library category	ESTs
gynoecious flower library	1

Homology

[Close]

BLAST of CU146189 vs. TrEMBL
Match: V7CSK6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G278000g PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 6.0e-21
Identity = 54/80 (67.50%), Postives = 59/80 (73.75%), Query Frame = -3


Query: 1   IHKQVIDSGXXXXXXXXXXXXSDLPVRERIFLLLDATQTALGGASGKFPQYYSAYYDLVS 60
           +H+QVID+G            SDL VRERIFLLLDATQT+LGGASGKFPQYY+AYYDLVS
Sbjct: 72  VHQQVIDTGIIPILVKIVKKKSDLSVRERIFLLLDATQTSLGGASGKFPQYYNAYYDLVS 131

Query: 61  AGVQFPQRPPAVSSNSPTQQ 120
           AGVQFPQR     SN P  Q
Sbjct: 132 AGVQFPQRDQVTQSNRPHPQ 151

Query: 121  180
           
Sbjct: 192  151

Query: 181  240
           
Sbjct: 252  151

[Close]

BLAST of CU146189 vs. TrEMBL
Match: A0A068VD20_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00009831001 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.9e-19
Identity = 50/78 (64.10%), Postives = 57/78 (73.08%), Query Frame = -3


Query: 7   IHKQVIDSGXXXXXXXXXXXXSDLPVRERIFLLLDATQTALGGASGKFPQYYSAYYDLVS 66
           +HKQVID+G            SDLP RE+IFLLLDA QT++GGASG+FPQYYSAYY+LVS
Sbjct: 73  VHKQVIDAGVLPVLVKIVKKKSDLPAREKIFLLLDAAQTSVGGASGRFPQYYSAYYELVS 132

Query: 67  AGVQFPQRPPAVSSNSPT 126
           AGVQFPQRP    S   T
Sbjct: 133 AGVQFPQRPNVQKSEPAT 150

Query: 127  186
           
Sbjct: 193  150

Query: 187  241
           
Sbjct: 253  150

[Close]

BLAST of CU146189 vs. TrEMBL
Match: V7AWY1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G157500g PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 3.3e-19
Identity = 52/80 (65.00%), Postives = 59/80 (73.75%), Query Frame = -3


Query: 1   IHKQVIDSGXXXXXXXXXXXXSDLPVRERIFLLLDATQTALGGASGKFPQYYSAYYDLVS 60
           IH+ VID+G            SDL VRERIFLLLDATQT+LGGASGKFPQYY+AYY+LVS
Sbjct: 73  IHELVIDTGIIPILVKIVKKKSDLAVRERIFLLLDATQTSLGGASGKFPQYYNAYYELVS 132

Query: 61  AGVQFPQRPPAVSSNSPTQQ 120
           AGVQF QR   V S+ P+ Q
Sbjct: 133 AGVQFSQRDQVVQSDHPSSQ 152

Query: 121  180
           
Sbjct: 193  152

Query: 181  240
           
Sbjct: 253  152

[Close]

BLAST of CU146189 vs. TrEMBL
Match: A0A118JZW6_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_021259 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 4.3e-19
Identity = 54/80 (67.50%), Postives = 58/80 (72.50%), Query Frame = -3


Query: 7   IHKQVIDSGXXXXXXXXXXXXS--DLPVRERIFLLLDATQTALGGASGKFPQYYSAYYDL 66
           IH QVID+G            S  DLPVRE+IFLLLDATQT+LGGASGKFPQYYSAYYDL
Sbjct: 107 IHTQVIDTGILPLLVKLVKKKSNSDLPVREKIFLLLDATQTSLGGASGKFPQYYSAYYDL 166

Query: 67  VSAGVQFPQRPPAVSSNSPT 126
           VSAGVQF QRP  +  N  T
Sbjct: 167 VSAGVQFSQRPEVLPKNYST 186

Query: 127  186
           
Sbjct: 227  186

Query: 187  241
           
Sbjct: 287  186

[Close]

BLAST of CU146189 vs. TrEMBL
Match: A5AKE4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030890 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.1e-18
Identity = 56/111 (50.45%), Postives = 64/111 (57.66%), Query Frame = -3


Query: 1   IHKQVIDSGXXXXXXXXXXXXSDLPVRERIFLLLDATQTALGGASGKFPQYYSAYYDLV- 60
           +H+QVID+G            +DLPVRE+IFLLLDATQT+LGGAS KFPQYYSAYYDLV 
Sbjct: 70  VHRQVIDNGLLPILVKIVKKKTDLPVREKIFLLLDATQTSLGGASAKFPQYYSAYYDLVW 129

Query: 61  ------------------------------SAGVQFPQRPPAVSSNSPTQQ 120
                                         SAGVQFPQRP A+SS+ PT Q
Sbjct: 130 LAVTAVLCGGFGSFVGDGGGINGVMLVAVVSAGVQFPQRPCAISSDPPTSQ 180

Query: 121  180
           
Sbjct: 190  180

Query: 181  240
           
Sbjct: 250  180

[Close]

BLAST of CU146189 vs. NCBI nr
Match: gi|449449813|ref|XP_004142659.1| (PREDICTED: target of Myb protein 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 1.1e-28
Identity = 68/80 (85.00%), Postives = 68/80 (85.00%), Query Frame = -3


Query: 1   IHKQVIDSGXXXXXXXXXXXXSDLPVRERIFLLLDATQTALGGASGKFPQYYSAYYDLVS 60
           IHKQVIDSG            SDLPVRERIFLLLDATQTALGGASGKFPQYYSAYYDLVS
Sbjct: 73  IHKQVIDSGVLPILVKIVKKKSDLPVRERIFLLLDATQTALGGASGKFPQYYSAYYDLVS 132

Query: 61  AGVQFPQRPPAVSSNSPTQQ 120
           AGVQFPQRPPAVSSNSPTQQ
Sbjct: 133 AGVQFPQRPPAVSSNSPTQQ 152

Query: 121  180
           
Sbjct: 193  152

Query: 181  240
           
Sbjct: 253  152

[Close]

BLAST of CU146189 vs. NCBI nr
Match: gi|700199333|gb|KGN54491.1| (hypothetical protein Csa_4G338950 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 1.1e-28
Identity = 68/80 (85.00%), Postives = 68/80 (85.00%), Query Frame = -3


Query: 1   IHKQVIDSGXXXXXXXXXXXXSDLPVRERIFLLLDATQTALGGASGKFPQYYSAYYDLVS 60
           IHKQVIDSG            SDLPVRERIFLLLDATQTALGGASGKFPQYYSAYYDLVS
Sbjct: 73  IHKQVIDSGVLPILVKIVKKKSDLPVRERIFLLLDATQTALGGASGKFPQYYSAYYDLVS 132

Query: 61  AGVQFPQRPPAVSSNSPTQQ 120
           AGVQFPQRPPAVSSNSPTQQ
Sbjct: 133 AGVQFPQRPPAVSSNSPTQQ 152

Query: 121  180
           
Sbjct: 193  152

Query: 181  240
           
Sbjct: 253  152

[Close]

BLAST of CU146189 vs. NCBI nr
Match: gi|659069348|ref|XP_008449359.1| (PREDICTED: LOW QUALITY PROTEIN: TOM1-like protein 1 [Cucumis melo])

HSP 1 Score: 132.1 bits (331), Expect = 4.3e-28
Identity = 67/79 (84.81%), Postives = 67/79 (84.81%), Query Frame = -3


Query: 4   IHKQVIDSGXXXXXXXXXXXXSDLPVRERIFLLLDATQTALGGASGKFPQYYSAYYDLVS 63
           IHKQVIDSG            SDLPVRERIFLLLDATQTALGGASGKFPQYYSAYYDLVS
Sbjct: 73  IHKQVIDSGVLPILVKIVKKKSDLPVRERIFLLLDATQTALGGASGKFPQYYSAYYDLVS 132

Query: 64  AGVQFPQRPPAVSSNSPTQ 123
           AGVQFPQRPPAVSSNSPTQ
Sbjct: 133 AGVQFPQRPPAVSSNSPTQ 151

Query: 124  183
           
Sbjct: 193  151

Query: 184  241
           
Sbjct: 253  151

[Close]

BLAST of CU146189 vs. NCBI nr
Match: gi|1009125549|ref|XP_015879670.1| (PREDICTED: TOM1-like protein 2 isoform X2 [Ziziphus jujuba])

HSP 1 Score: 124.8 bits (312), Expect = 6.8e-26
Identity = 62/80 (77.50%), Postives = 65/80 (81.25%), Query Frame = -3


Query: 1   IHKQVIDSGXXXXXXXXXXXXSDLPVRERIFLLLDATQTALGGASGKFPQYYSAYYDLVS 60
           IHKQVID+G            SDLPVRERIFLLLDATQT+LGGASGKFPQYY+AYYDLVS
Sbjct: 78  IHKQVIDTGILPLLVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQYYNAYYDLVS 137

Query: 61  AGVQFPQRPPAVSSNSPTQQ 120
           AGVQFPQRPPAV SN PT Q
Sbjct: 138 AGVQFPQRPPAVPSNRPTSQ 157

Query: 121  180
           
Sbjct: 198  157

Query: 181  240
           
Sbjct: 258  157

[Close]

BLAST of CU146189 vs. NCBI nr
Match: gi|1009125547|ref|XP_015879669.1| (PREDICTED: TOM1-like protein 2 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 124.8 bits (312), Expect = 6.8e-26
Identity = 62/80 (77.50%), Postives = 65/80 (81.25%), Query Frame = -3


Query: 1   IHKQVIDSGXXXXXXXXXXXXSDLPVRERIFLLLDATQTALGGASGKFPQYYSAYYDLVS 60
           IHKQVID+G            SDLPVRERIFLLLDATQT+LGGASGKFPQYY+AYYDLVS
Sbjct: 81  IHKQVIDTGILPLLVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQYYNAYYDLVS 140

Query: 61  AGVQFPQRPPAVSSNSPTQQ 120
           AGVQFPQRPPAV SN PT Q
Sbjct: 141 AGVQFPQRPPAVPSNRPTSQ 160

Query: 121  180
           
Sbjct: 201  160

Query: 181  240
           
Sbjct: 261  160

The following BLAST results are available for this feature:

BLAST of CU146189 vs. TrEMBL


Match Name	E-value	Identity	Description
V7CSK6_PHAVU	6.0e-21	67.50	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G278000g PE=4 SV=1	[more]
A0A068VD20_COFCA	1.9e-19	64.10	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00009831001 PE=4 SV=1	[more]
V7AWY1_PHAVU	3.3e-19	65.00	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G157500g PE=4 SV=1	[more]
A0A118JZW6_CYNCS	4.3e-19	67.50	Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_021259 PE=4 ...	[more]
A5AKE4_VITVI	2.1e-18	50.45	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030890 PE=4 SV=1	[more]

BLAST of CU146189 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449449813\|ref\|XP_004142659.1\|	1.1e-28	85.00	PREDICTED: target of Myb protein 1 isoform X1 [Cucumis sativus]	[more]
gi\|700199333\|gb\|KGN54491.1\|	1.1e-28	85.00	hypothetical protein Csa_4G338950 [Cucumis sativus]	[more]
gi\|659069348\|ref\|XP_008449359.1\|	4.3e-28	84.81	PREDICTED: LOW QUALITY PROTEIN: TOM1-like protein 1 [Cucumis melo]	[more]
gi\|1009125549\|ref\|XP_015879670.1\|	6.8e-26	77.50	PREDICTED: TOM1-like protein 2 isoform X2 [Ziziphus jujuba]	[more]
gi\|1009125547\|ref\|XP_015879669.1\|	6.8e-26	77.50	PREDICTED: TOM1-like protein 2 isoform X1 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR002014	VHS_dom
IPR008942	ENTH_VHS

Vocabulary: **Biological Process**
Term	Definition
GO:0006886	intracellular protein transport

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa4G338950	Csa4G338950	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0135845	G0135845	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002014	VHS domain	PROFILE	PS50179	VHS	coord: 1..67 score: 12
IPR008942	ENTH/VHS	GENE3D	G3DSA:1.25.40.90		coord: 2..68 score: 4.
IPR008942	ENTH/VHS	unknown	SSF48464	ENTH/VHS domain	coord: 2..69 score: 4.1
None	No IPR available	PANTHER	PTHR13856	VHS DOMAIN CONTAINING PROTEIN FAMILY	coord: 2..81 score: 8.6
None	No IPR available	PANTHER	PTHR13856:SF81	ENTH/VHS/GAT FAMILY PROTEIN	coord: 2..81 score: 8.6